CsaV3_4G006890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G006890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 4687840 .. 4688221 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGACTACGATGAATGTCATAAAGGGCTTAAAGATTGTAATCATAATTGATGAAAAAGCCTAATGGATTGAATGATGATGCAGAAGGGAAATTTTGAAGAAACAAGAAATGGGGATTTTCGGATTCCAAGTAGACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

mRNA sequence

ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGACTACGATGAATGTCATAAAGGGCTTAAAGATTACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

Coding sequence (CDS)

ATGAGCCACGCAGTAGGGTGCAAAGGGATTCAATCCAGGACCAAAAACACGAAGATTGTGAACGACTACGATGAATGTCATAAAGGGCTTAAAGATTACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

Protein sequence

MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE
Homology
[Close]
BLAST of CsaV3_4G006890 vs. NCBI nr
Match: KGN53439.1 (hypothetical protein Csa_4G055340 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 8.6e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60
          MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT
Sbjct: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60

Query: 61 EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE 95
          EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE
Sbjct: 61 EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE 94

[Close]
BLAST of CsaV3_4G006890 vs. TrEMBL
Match: tr|A0A0A0KX61|A0A0A0KX61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.7e-48
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60
          MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT
Sbjct: 1  MSHAVGCKGIQSRTKNTKIVNDYDECHKGLKDYKWLKGKIGGGGYRNPDLNRTELKGNMT 60

Query: 61 EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE 95
          EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE
Sbjct: 61 EKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE 94

The following BLAST results are available for this feature:
BLAST of CsaV3_4G006890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53439.18.6e-48100.00hypothetical protein Csa_4G055340 [Cucumis sativus][more]
BLAST of CsaV3_4G006890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G006890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G006890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KX61|A0A0A0KX61_CUCSA5.7e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G006890.1CsaV3_4G006890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..80

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G006890CSPI04G06670Wild cucumber (PI 183967)cpicucB213
CsaV3_4G006890CsGy4G006610Cucumber (Gy14) v2cgybcucB171
CsaV3_4G006890Lsi07G007520Bottle gourd (USVL1VR-Ls)cuclsiB323
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G006890Silver-seed gourdcarcucB0052
CsaV3_4G006890Silver-seed gourdcarcucB0689
CsaV3_4G006890Cucumber (Gy14) v1cgycucB152
CsaV3_4G006890Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G006890Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G006890Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G006890Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G006890Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G006890Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G006890Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G006890Melon (DHL92) v3.6.1cucmedB311
CsaV3_4G006890Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G006890Watermelon (97103) v1cucwmB317
CsaV3_4G006890Watermelon (97103) v2cucwmbB329
CsaV3_4G006890Wax gourdcucwgoB370
CsaV3_4G006890Wax gourdcucwgoB387