CsaV3_4G006360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G006360
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 4250971 .. 4251165 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

mRNA sequence

ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

Coding sequence (CDS)

ATGGGTCACGTGGTGAGAGAGGTGAAGAGTAGGAATATTGCGTACTCGAAAGGCGTGAAGGGACACTCCGTAGTCCATCCACCCCCTCCGCTTGGCTCATTAAAGCAAACCCTGTGTTCAAAGGAACCCAAGTGGCCTGCACCTGGACCCACCCTGATTCTACCCCTTGTAACTCCTCCTAATTTTTCTTTTTAA

Protein sequence

MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPPNFSF
Homology
[Close]
BLAST of CsaV3_4G006360 vs. NCBI nr
Match: KGN53383.1 (hypothetical protein Csa_4G050860 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60
          MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP
Sbjct: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60

Query: 61 NFSF 65
          NFSF
Sbjct: 61 NFSF 64

[Close]
BLAST of CsaV3_4G006360 vs. TrEMBL
Match: tr|A0A0A0KV00|A0A0A0KV00_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G050860 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.2e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60
          MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP
Sbjct: 1  MGHVVREVKSRNIAYSKGVKGHSVVHPPPPLGSLKQTLCSKEPKWPAPGPTLILPLVTPP 60

Query: 61 NFSF 65
          NFSF
Sbjct: 61 NFSF 64

The following BLAST results are available for this feature:
BLAST of CsaV3_4G006360 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53383.11.2e-29100.00hypothetical protein Csa_4G050860 [Cucumis sativus][more]
BLAST of CsaV3_4G006360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G006360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G006360 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KV00|A0A0A0KV00_CUCSA8.2e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G050860 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G006360.1CsaV3_4G006360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G006360Silver-seed gourdcarcucB0049
CsaV3_4G006360Silver-seed gourdcarcucB0624
CsaV3_4G006360Cucumber (Gy14) v2cgybcucB129
CsaV3_4G006360Cucumber (Gy14) v2cgybcucB171
CsaV3_4G006360Cucumber (Gy14) v2cgybcucB229
CsaV3_4G006360Cucumber (Gy14) v2cgybcucB230
CsaV3_4G006360Cucumber (Gy14) v1cgycucB134
CsaV3_4G006360Cucumber (Gy14) v1cgycucB391
CsaV3_4G006360Cucumber (Gy14) v1cgycucB469
CsaV3_4G006360Cucurbita maxima (Rimu)cmacucB0337
CsaV3_4G006360Cucurbita maxima (Rimu)cmacucB0398
CsaV3_4G006360Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G006360Cucurbita maxima (Rimu)cmacucB0727
CsaV3_4G006360Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G006360Cucurbita moschata (Rifu)cmocucB0332
CsaV3_4G006360Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G006360Cucurbita moschata (Rifu)cmocucB0394
CsaV3_4G006360Cucurbita moschata (Rifu)cmocucB0715
CsaV3_4G006360Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G006360Cucurbita pepo (Zucchini)cpecucB0207
CsaV3_4G006360Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G006360Cucurbita pepo (Zucchini)cpecucB0503
CsaV3_4G006360Wild cucumber (PI 183967)cpicucB161
CsaV3_4G006360Wild cucumber (PI 183967)cpicucB213
CsaV3_4G006360Wild cucumber (PI 183967)cpicucB281
CsaV3_4G006360Wild cucumber (PI 183967)cpicucB282
CsaV3_4G006360Bottle gourd (USVL1VR-Ls)cuclsiB267
CsaV3_4G006360Bottle gourd (USVL1VR-Ls)cuclsiB268
CsaV3_4G006360Bottle gourd (USVL1VR-Ls)cuclsiB318
CsaV3_4G006360Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G006360Melon (DHL92) v3.5.1cucmeB267
CsaV3_4G006360Melon (DHL92) v3.5.1cucmeB268
CsaV3_4G006360Melon (DHL92) v3.5.1cucmeB297
CsaV3_4G006360Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G006360Melon (DHL92) v3.6.1cucmedB262
CsaV3_4G006360Melon (DHL92) v3.6.1cucmedB263
CsaV3_4G006360Melon (DHL92) v3.6.1cucmedB289
CsaV3_4G006360Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G006360Watermelon (Charleston Gray)cucwcgB299
CsaV3_4G006360Watermelon (Charleston Gray)cucwcgB301
CsaV3_4G006360Watermelon (Charleston Gray)cucwcgB331
CsaV3_4G006360Watermelon (Charleston Gray)cucwcgB338
CsaV3_4G006360Watermelon (97103) v1cucwmB327
CsaV3_4G006360Watermelon (97103) v1cucwmB335
CsaV3_4G006360Watermelon (97103) v1cucwmB338
CsaV3_4G006360Watermelon (97103) v1cucwmB343
CsaV3_4G006360Watermelon (97103) v1cucwmB345
CsaV3_4G006360Watermelon (97103) v2cucwmbB270
CsaV3_4G006360Watermelon (97103) v2cucwmbB319
CsaV3_4G006360Watermelon (97103) v2cucwmbB326
CsaV3_4G006360Wax gourdcucwgoB367
CsaV3_4G006360Wax gourdcucwgoB370
CsaV3_4G006360Cucumber (Chinese Long) v3cuccucB117
CsaV3_4G006360Cucumber (Chinese Long) v3cuccucB174
CsaV3_4G006360Cucumber (Chinese Long) v3cuccucB175