CsaV3_4G005620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 3732626 .. 3733392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTGATATTTTTTCCCCTTAAAAAGTGGGGCAAATTTGCTAAAAAAATATTTTAAAGTATGACGAAACTCTACTACACCATCAAACTTCCAATTGAAGTGTAAAATACACAATAAAATGATGATGAATGTAAACCTGATAAAATTTAGAAGTAATGTTAGATGGTGGCTAATGGAGAGTTTTCACAGAAATTGTTGTTTATAGTCATGGATTTAGTAATAGGCATACTGTTCAAGCTTATGTTTACATTGTGTTTCTCACAATTTGTCTAAAAGGAAAAATGAAAATTATAGTCTTTCCTTATCTGGTAGTTAATGTGAAAAAAGTTTGCCCTTTTTGAAATTGCATTAGATCAACTGGCGGAACCCCACGTTGGTATCGCCCACCACCTGTTTGTTGTATTAATGTCTCAACCAACTTCCTTTTTTCTTTTTCTTTTTCCTCCTTTATTCAATTCATTCAATCTCCACGTATGCCCACCATCGTTGCCTTCCACCTTCCCAATGCCTTCTACCGAGTCGTCGGAGCTAGTGATGGTGGAATGTGGCTGATGATAGCCGTCGGCAGTGATGATCAATTAGGCCGAGAAGCACTACATAGCATTCTTGTTCACCATGTTGGCCATATCAAGTCTACTCAAATGCTATTTCCCTGCACATCATGTGCTAATTCAGTGCTTTTGTAATGTCATATAATTATGCTTCTAGAGATCTCATCTTTTAAATGGTCATTAATTTCTTATTCATTCTGACTGCTTCAAAAAC

mRNA sequence

ATGCCCACCATCGTTGCCTTCCACCTTCCCAATGCCTTCTACCGAGTCGTCGGAGCTAGTGATGGTGGAATGTGGCTGATGATAGCCGTCGGCAGTGATGATCAATTAGGCCGAGAAGCACTACATAGCATTCTTGTTCACCATGTTGGCCATATCAAGTCTACTCAAATGCTATTTCCCTGCACATCATGTGCTAATTCAGTGCTTTTGTAA

Coding sequence (CDS)

ATGCCCACCATCGTTGCCTTCCACCTTCCCAATGCCTTCTACCGAGTCGTCGGAGCTAGTGATGGTGGAATGTGGCTGATGATAGCCGTCGGCAGTGATGATCAATTAGGCCGAGAAGCACTACATAGCATTCTTGTTCACCATGTTGGCCATATCAAGTCTACTCAAATGCTATTTCCCTGCACATCATGTGCTAATTCAGTGCTTTTGTAA

Protein sequence

MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFPCTSCANSVLL
Homology
[Close]
BLAST of CsaV3_4G005620 vs. NCBI nr
Match: KGN53306.1 (hypothetical protein Csa_4G046690 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP 60
          MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP
Sbjct: 1  MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP 60

Query: 61 CTSCANSVLL 71
          CTSCANSVLL
Sbjct: 61 CTSCANSVLL 70

[Close]
BLAST of CsaV3_4G005620 vs. TrEMBL
Match: tr|A0A0A0KZJ4|A0A0A0KZJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046690 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP 60
          MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP
Sbjct: 1  MPTIVAFHLPNAFYRVVGASDGGMWLMIAVGSDDQLGREALHSILVHHVGHIKSTQMLFP 60

Query: 61 CTSCANSVLL 71
          CTSCANSVLL
Sbjct: 61 CTSCANSVLL 70

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53306.15.9e-33100.00hypothetical protein Csa_4G046690 [Cucumis sativus][more]
BLAST of CsaV3_4G005620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZJ4|A0A0A0KZJ4_CUCSA3.9e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046690 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005620.1CsaV3_4G005620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005620CSPI04G05470Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G005620Cucumber (Chinese Long) v3cuccucB118
CsaV3_4G005620Cucumber (Chinese Long) v3cuccucB181
CsaV3_4G005620Silver-seed gourdcarcucB0440
CsaV3_4G005620Silver-seed gourdcarcucB0982
CsaV3_4G005620Silver-seed gourdcarcucB1063
CsaV3_4G005620Cucumber (Gy14) v2cgybcucB171
CsaV3_4G005620Cucumber (Gy14) v2cgybcucB287
CsaV3_4G005620Cucumber (Gy14) v1cgycucB134
CsaV3_4G005620Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G005620Cucurbita maxima (Rimu)cmacucB0796
CsaV3_4G005620Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G005620Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G005620Cucurbita moschata (Rifu)cmocucB0779
CsaV3_4G005620Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G005620Cucurbita pepo (Zucchini)cpecucB0089
CsaV3_4G005620Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G005620Cucurbita pepo (Zucchini)cpecucB0497
CsaV3_4G005620Wild cucumber (PI 183967)cpicucB352
CsaV3_4G005620Bottle gourd (USVL1VR-Ls)cuclsiB276
CsaV3_4G005620Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G005620Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G005620Melon (DHL92) v3.5.1cucmeB342
CsaV3_4G005620Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G005620Melon (DHL92) v3.6.1cucmedB336
CsaV3_4G005620Watermelon (Charleston Gray)cucwcgB300
CsaV3_4G005620Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G005620Watermelon (97103) v1cucwmB322
CsaV3_4G005620Watermelon (97103) v1cucwmB344
CsaV3_4G005620Watermelon (97103) v2cucwmbB271
CsaV3_4G005620Watermelon (97103) v2cucwmbB316
CsaV3_4G005620Watermelon (97103) v2cucwmbB330
CsaV3_4G005620Wax gourdcucwgoB372
CsaV3_4G005620Wax gourdcucwgoB381
CsaV3_4G005620Wax gourdcucwgoB433