CsaV3_4G005290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCytochrome P450 family ferulate hydroxylase
Locationchr4 : 3491229 .. 3491555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGGTCTGATCACCATCACCATGACTTTTAAGTAACAAACTTTAGTACTCTATAAATTTTAACAAGGCTGTATAGTTTTAGTTTTCATTTTTTTGAAATTTATTCTTAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

mRNA sequence

ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

Coding sequence (CDS)

ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

Protein sequence

MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQVQNWVFNRYYKTTMLMTNNDNX
Homology
[Close]
BLAST of CsaV3_4G005290 vs. NCBI nr
Match: KGN53274.1 (hypothetical protein Csa_4G043900 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQV 54
          MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQ+
Sbjct: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQI 53

[Close]
BLAST of CsaV3_4G005290 vs. NCBI nr
Match: XP_008453715.1 (PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 84A1-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-10
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          ML+R QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLLRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]
BLAST of CsaV3_4G005290 vs. NCBI nr
Match: AFO67624.1 (ferulate 5-hydroxylase, partial [Medicago sativa subsp. x varia])

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

[Close]
BLAST of CsaV3_4G005290 vs. NCBI nr
Match: AFO67625.1 (ferulate 5-hydroxylase, partial [Medicago sativa subsp. caerulea] >AFO67651.1 ferulate 5-hydroxylase, partial [Medicago sativa subsp. caerulea])

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

[Close]
BLAST of CsaV3_4G005290 vs. NCBI nr
Match: AFO67626.1 (ferulate 5-hydroxylase, partial [Medicago sativa subsp. caerulea])

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

[Close]
BLAST of CsaV3_4G005290 vs. TAIR10
Match: AT4G36220.1 (ferulic acid 5-hydroxylase 1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGG+ H     LHM  +S  + AR VLQ+
Sbjct: 53 MLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQV 99

[Close]
BLAST of CsaV3_4G005290 vs. TAIR10
Match: AT5G04330.1 (Cytochrome P450 superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.9e-06
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          +LM +Q  HRGLA L++ YGG+ HL     H+ V+S  D AR VLQ+
Sbjct: 45 ILMMNQFNHRGLAKLSRIYGGLLHLRLGFSHIFVVSSPDIARQVLQV 91

[Close]
BLAST of CsaV3_4G005290 vs. Swiss-Prot
Match: sp|Q42600|C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana OX=3702 GN=CYP84A1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGG+ H     LHM  +S  + AR VLQ+
Sbjct: 53 MLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQV 99

[Close]
BLAST of CsaV3_4G005290 vs. Swiss-Prot
Match: sp|F4JW83|C84A4_ARATH (Cytochrome P450 84A4 OS=Arabidopsis thaliana OX=3702 GN=CYP84A4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          +LM +Q  HRGLA L++ YGG+ HL     H+ V+S  D AR VLQ+
Sbjct: 45 ILMMNQFNHRGLAKLSRIYGGLLHLRLGFSHIFVVSSPDIARQVLQV 91

[Close]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match: tr|A0A0A0KWL6|A0A0A0KWL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043900 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQV 54
          MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQ+
Sbjct: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQI 53

[Close]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match: tr|A0A1S3BWX6|A0A1S3BWX6_CUCME (LOW QUALITY PROTEIN: cytochrome P450 84A1-like OS=Cucumis melo OX=3656 GN=LOC103494362 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          ML+R QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLLRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match: tr|I7D3I3|I7D3I3_MEDSF (Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F5H PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

[Close]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match: tr|I7DCV7|I7DCV7_MEDSF (Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F5H PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

[Close]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match: tr|I7DG76|I7DG76_MEDSF (Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F5H PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGGIFH     LHMV ISD DAAR VLQ+
Sbjct: 21 MLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQV 67

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53274.15.9e-2098.11hypothetical protein Csa_4G043900 [Cucumis sativus][more]
XP_008453715.14.3e-1080.85PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 84A1-like [Cucumis melo][more]
AFO67624.11.8e-0874.47ferulate 5-hydroxylase, partial [Medicago sativa subsp. x varia][more]
AFO67625.11.8e-0874.47ferulate 5-hydroxylase, partial [Medicago sativa subsp. caerulea] >AFO67651.1 fe... [more]
AFO67626.11.8e-0874.47ferulate 5-hydroxylase, partial [Medicago sativa subsp. caerulea][more]
BLAST of CsaV3_4G005290 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36220.11.3e-0859.57ferulic acid 5-hydroxylase 1[more]
AT5G04330.15.9e-0648.94Cytochrome P450 superfamily protein[more]
BLAST of CsaV3_4G005290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q42600|C84A1_ARATH2.3e-0759.57Cytochrome P450 84A1 OS=Arabidopsis thaliana OX=3702 GN=CYP84A1 PE=1 SV=1[more]
sp|F4JW83|C84A4_ARATH1.1e-0448.94Cytochrome P450 84A4 OS=Arabidopsis thaliana OX=3702 GN=CYP84A4 PE=1 SV=1[more]
BLAST of CsaV3_4G005290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWL6|A0A0A0KWL6_CUCSA3.9e-2098.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043900 PE=4 SV=1[more]
tr|A0A1S3BWX6|A0A1S3BWX6_CUCME2.8e-1080.85LOW QUALITY PROTEIN: cytochrome P450 84A1-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|I7D3I3|I7D3I3_MEDSF1.2e-0874.47Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F... [more]
tr|I7DCV7|I7DCV7_MEDSF1.2e-0874.47Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F... [more]
tr|I7DG76|I7DG76_MEDSF1.2e-0874.47Ferulate 5-hydroxylase (Fragment) OS=Medicago sativa subsp. falcata OX=3878 GN=F... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005290.1CsaV3_4G005290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005290CsGy4G005070Cucumber (Gy14) v2cgybcucB171
CsaV3_4G005290Cla97C01G019500Watermelon (97103) v2cucwmbB271
CsaV3_4G005290Cla97C07G135930Watermelon (97103) v2cucwmbB330
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G005290CsaV3_6G046880Cucumber (Chinese Long) v3cuccucB181
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G005290Cucumber (Chinese Long) v3cuccucB083
CsaV3_4G005290Silver-seed gourdcarcucB0440
CsaV3_4G005290Silver-seed gourdcarcucB0982
CsaV3_4G005290Silver-seed gourdcarcucB1063
CsaV3_4G005290Cucumber (Gy14) v2cgybcucB287
CsaV3_4G005290Cucumber (Gy14) v1cgycucB323
CsaV3_4G005290Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G005290Cucurbita maxima (Rimu)cmacucB0796
CsaV3_4G005290Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G005290Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G005290Cucurbita moschata (Rifu)cmocucB0779
CsaV3_4G005290Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G005290Cucurbita pepo (Zucchini)cpecucB0089
CsaV3_4G005290Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G005290Cucurbita pepo (Zucchini)cpecucB0497
CsaV3_4G005290Wild cucumber (PI 183967)cpicucB213
CsaV3_4G005290Wild cucumber (PI 183967)cpicucB352
CsaV3_4G005290Bottle gourd (USVL1VR-Ls)cuclsiB276
CsaV3_4G005290Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G005290Melon (DHL92) v3.5.1cucmeB273
CsaV3_4G005290Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G005290Melon (DHL92) v3.5.1cucmeB342
CsaV3_4G005290Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G005290Melon (DHL92) v3.6.1cucmedB336
CsaV3_4G005290Watermelon (Charleston Gray)cucwcgB300
CsaV3_4G005290Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G005290Watermelon (97103) v1cucwmB322
CsaV3_4G005290Watermelon (97103) v1cucwmB344
CsaV3_4G005290Wax gourdcucwgoB381