CsaV3_4G005130 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G005130
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 3376435 .. 3376620 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

mRNA sequence

ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

Coding sequence (CDS)

ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

Protein sequence

MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVTG

Homology

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BLAST of CsaV3_4G005130 vs. NCBI nr
Match: KGN53258.1 (hypothetical protein Csa_4G038750 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60
          MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT
Sbjct: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60

Query: 61 G 62
          G
Sbjct: 61 G 61

[Close]

BLAST of CsaV3_4G005130 vs. TrEMBL
Match: tr|A0A0A0KUN0|A0A0A0KUN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038750 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60
          MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT
Sbjct: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:

BLAST of CsaV3_4G005130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53258.1	3.3e-24	100.00	hypothetical protein Csa_4G038750 [Cucumis sativus]	[more]

BLAST of CsaV3_4G005130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G005130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G005130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KUN0\|A0A0A0KUN0_CUCSA	2.2e-24	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G005130.1	CsaV3_4G005130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G005130	CSPI04G05010	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G005130	Cucsa.201340	Cucumber (Gy14) v1	cgycucB323
CsaV3_4G005130	CsGy4G004920	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G005130	Silver-seed gourd	carcucB0982
CsaV3_4G005130	Silver-seed gourd	carcucB1063
CsaV3_4G005130	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G005130	Cucurbita maxima (Rimu)	cmacucB0847
CsaV3_4G005130	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G005130	Cucurbita moschata (Rifu)	cmocucB0833
CsaV3_4G005130	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G005130	Cucurbita pepo (Zucchini)	cpecucB0497
CsaV3_4G005130	Bottle gourd (USVL1VR-Ls)	cuclsiB322
CsaV3_4G005130	Melon (DHL92) v3.5.1	cucmeB273
CsaV3_4G005130	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G005130	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G005130	Watermelon (Charleston Gray)	cucwcgB344
CsaV3_4G005130	Watermelon (97103) v1	cucwmB322
CsaV3_4G005130	Watermelon (97103) v2	cucwmbB330
CsaV3_4G005130	Wax gourd	cucwgoB381