CsaV3_4G005130 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G005130
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 3376435 .. 3376620 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

mRNA sequence

ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

Coding sequence (CDS)

ATGAAGAACAGAGAAATTGAAGAGGCGAAACGGAGAAAGACGAACCTGGCCAGAAACAGAATGGCTCTGTTTAATGCCCAAAACTTGAGAGTGTTGACCGGTGAGAATAAAAAGGGGGAGAGAATTGGAAGTCCGATCGTATACGAAATGGACGAGAGGATCGGCGGCAAATCAGTAACCGGATAG

Protein sequence

MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVTG
BLAST of CsaV3_4G005130 vs. NCBI nr
Match: KGN53258.1 (hypothetical protein Csa_4G038750 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60
          MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT
Sbjct: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of CsaV3_4G005130 vs. TrEMBL
Match: tr|A0A0A0KUN0|A0A0A0KUN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038750 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60
          MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT
Sbjct: 1  MKNREIEEAKRRKTNLARNRMALFNAQNLRVLTGENKKGERIGSPIVYEMDERIGGKSVT 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53258.13.3e-24100.00hypothetical protein Csa_4G038750 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KUN0|A0A0A0KUN0_CUCSA2.2e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038750 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005130.1CsaV3_4G005130.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005130CSPI04G05010Wild cucumber (PI 183967)cpicucB213
CsaV3_4G005130Cucsa.201340Cucumber (Gy14) v1cgycucB323
CsaV3_4G005130CsGy4G004920Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None