CsaV3_4G005010 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G005010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 3283261 .. 3285120 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTAATCAACAATCCTGCCAAATCTGACCTATTTTGGGCGGGGTTTTTGTTTTCTGTTTGAGACGATACAGATTTCAAATCAGATTCATTTCATTTGTAGCTCGTTATCTCTTCCTCGCCCAATCAAGCTCTCTCTTTTCCTCTCTCTCTCTCTCTTTCTCTCTAGGGCTTTCAACGGTTTAAGGTCAAGTGCTCTTTCAAGGTAATTACGCATCTCTAATATCTGGGTTTCTGGATTTTCTAACATTAATTCGCTGTATATTACGGTTTAATTGCCTGCCTGTCTCTATGATTTTATTGTACTTTCATTTGGTCGCTCATGACTGTCGTATCGCTTTCGATTTCTGCCTTGAGGTGTTATTGATTTCCGTTTAGAAATTGTTTTTTTTCTCCCCTTGAAGCTTGGATGTTAGTCACGTAGATTTTATAGCTCTTAATATTGGATATTTTTATACTTTATTTCTGAATTTAATTTGCGGCATGCCTTAAGTTCCTAGATTTGTACGAAAACGGGTCTTGATCTCCTGTACTGTGCTGTAATTTTAAAAATGTTGATAACGTTCTTGTTTGGTACTGTGTTTTTTATTGTATACCTTGTGCAGGTAGGGGCTGTGCCGATGTTTACATCGTTGTCATTGATGAAGTTTTGAGATTTGTAATGTAGGAGACATTAATTTATAAATCTTAAACTTGGCAAAAATTAGCTTCCAGAGCGATGATTTTACAGGTTCACGTCTAACATATCTTATAAACGCCTGATCTGACTTAACCTAACTGGATCAAGTTTGTTGGGGCCTGGGGGTAATTTGGAGGTTTTATAACCCACCCTTACGCTAGTTTGATGAGATCATCTCATATTTGCTTTTACTTTTTTTTCTTCGGACACACTGCTGTCAAATGGCTTTTGTCTTTCTTTTACTAGGATCAACAAAAAAAATCAGACATAAAGGGATCGATAAAGATTGATCTGCTTAGGTTTCTGGGCTTTGTGACATTTCAATTTTTGGGTGCAATGCCCTACTCATACAAAGAATAATTGATTGGAGGAATGAATCCAAGGCAATGATACCATTTTACCTGTGTGAGTTTGGGGGCCCAGTAGTGGACAACGCTGCTGTCTTTTGACCTCTTTTGGATTATGATGACTGAAGTTCTAATGGCTGTTTAGGAGTTTTGACAATATATAATATCGTGTTCATCCTTGAGAATGAAGTGATACCTGAATCATTGGGTACGTGTAATGTTTGACATCAAAAGTAGTCATATAAGTTGGTTTAAGTAATACAAAGTTATGGAGGTAGCTATTGTCAGTAAGTAGAGTGCAAACTATGAGTACAAGAGAGGAGTTTGTTTTGTTAGCCTTCGGCAGGAGGTTATGTATACAAATATGGTAAGGTCATGAGTAATTTGGGAGATTTTGAGATTAGTTTATGGCAGAGAGATAGCCTACTAAATTTTTAGTACCCACGCTCTAATTCACCCCAACCATTGTGTTCTATCATAATTGATTGACTATTTATTAGAGACTATTCATTGATTTATGGCTTGAGTAATCTTGAGGAGGGGAATATTTCTCATAACTTCTGATGAAGTTCTACTGCCAATCTTAACGAGCTGTTCAGTTTCCAGTTTTAAATTGTAGTTTCTCGGTAGTCGGTTTTATTATCTTTATTTTATTTTTTCTGGTGATGTATATTATGTGTTTCATTTGAATGGAGATGTGAAAATCTTATGTTTCCTTGGAACATCTTGATTCATTGTCTGATTTGCAAGATGCTGACTATAGTTTTACTATTTTTTCAGGACAGAAGGGCAAGTCAAAGAAGTTAACAGATTTTGGTGTTTGAGGCTGTAA

mRNA sequence

ATGTGTTTAATCAACAATCCTGCCAAATCTGACCTATTTTGGGCGGGCTCGTTATCTCTTCCTCGCCCAATCAAGCTCTCTCTTTTCCTCTCTCTCTCTCTCTTTCTCTCTAGGGCTTTCAACGGTTTAAGGTCAAGTGCTCTTTCAAGGACAGAAGGGCAAGTCAAAGAAGTTAACAGATTTTGGTGTTTGAGGCTGTAA

Coding sequence (CDS)

ATGTGTTTAATCAACAATCCTGCCAAATCTGACCTATTTTGGGCGGGCTCGTTATCTCTTCCTCGCCCAATCAAGCTCTCTCTTTTCCTCTCTCTCTCTCTCTTTCTCTCTAGGGCTTTCAACGGTTTAAGGTCAAGTGCTCTTTCAAGGACAGAAGGGCAAGTCAAAGAAGTTAACAGATTTTGGTGTTTGAGGCTGTAA

Protein sequence

MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNRFWCLRL
BLAST of CsaV3_4G005010 vs. NCBI nr
Match: KGN53246.1 (hypothetical protein Csa_4G038640 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR 60
          MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR
Sbjct: 1  MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR 60

Query: 61 FWCLRL 67
          FWCLRL
Sbjct: 61 FWCLRL 66

BLAST of CsaV3_4G005010 vs. TrEMBL
Match: tr|A0A0A0KZD4|A0A0A0KZD4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038640 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.1e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0

Query: 1  MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR 60
          MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR
Sbjct: 1  MCLINNPAKSDLFWAGSLSLPRPIKLSLFLSLSLFLSRAFNGLRSSALSRTEGQVKEVNR 60

Query: 61 FWCLRL 67
          FWCLRL
Sbjct: 61 FWCLRL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53246.11.1e-28100.00hypothetical protein Csa_4G038640 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KZD4|A0A0A0KZD4_CUCSA7.1e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038640 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005010.1CsaV3_4G005010.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005010CSPI04G04910Wild cucumber (PI 183967)cpicucB213
CsaV3_4G005010CsGy4G004810Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None