CsaV3_4G004980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G004980
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionvam6/Vps39-like protein
Locationchr4 : 3265800 .. 3267376 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGACTCCAAAACTTGGGTTAGGTCCGTCATTCAAGGTTAAAGGAGTCGTCGTGCAGCTAAGAAAATTGCTGCAATAGAAGGTGCAGAAGACATGAAAGTTAGTCTTAGTAACACTGACAGTAGCAGGAGTGATGGCGACACTGATGAACCTGGCGAAGAAGGAAGCTCTTCAATTATGCTTGATGAAGCTCTGAACCTGTTGTGAGCCAAAGGTGGGACAGAATTAATGGAGCACAGGCACTCAAACTTTTACCCAAGGAAACAAAGTTACAGGTAATCGTTCTTTCATTAGACATCTTAAAATAAAGATTGAATAGAAAACACTAGAACTCACCCCATGCTTATGCGTGCACTCCTAAATTATCTAATCTTGTCTCAAATTACTTCTGGATGTTACTGTCTCTGATTTAAATCGAACCATTTAAGCCTTCTTTAATATCTAGACTATAGACTATAGATGTAGATTGTTAATATTTTTTTCTAAACTTCATACAGATTTTGAATAATTTGAATTAATTAAATAGTAAGAATGTAATTGATTAAAACTAAAAGAAGATCTAAGAGACCAAATTCTCTCCTTAAACTTATTATATGCATATATATATCTTTTACAGATAGTTATGCTTCTAAGTCTCTTTCTAGTTTCATCATTATTAGCGTCTTCTTTAATCCTAAAATGCAGAACTTGCTACAATTTATTGGACCACTTTTAAGGAAATCCAGTGAGGCGTACAGGAATTCTTCAGTGATAAAGAGTTTGCGACAAAGTGAAAACTTACAGGTATGCACTGAACAAAAATCAAAATAAGTTTATGAGTGATTCCATTGCAAATCAAATTTTTTTTCCAGATTGGATATCTTGATGTCATCATTTTTATGTCCTTGCATTATTTGATTGACTTACTACCCTTCAAATCATATGGTAATCCATTGGATTTGATCGCAACCTTATTGTAACATGGTATATGCTTTTATTTTGAAGTTGGGAAGATATTAGCCTCAACTTCCAATTGACATTCAAATGGTGATCTATTACCATTTTGATACTTGGTCGACACCTTCCGTTTTAGAGAGAGAAAAAAGAAAAAAGAAAAATCACCTTCACTAGCGAATTTCATACTACCTGAAACATGAGCCCAATGATCATCCCCATACGTCTCGACTGCTGCACATTTACACTACATCCACAACTAAGTGACACGAAGTTATTGTCAGCATCAGCCAACCTAAATCAAGATTCTTCCTCACAACCCATAACTCGTCTGCTGAATTCCCTTCATCCTTACGCTATTTGAGCTTCATTATAACAATGTCTCATGTGAAACCACGATATCATCTCACATACTAAGATTATTTTGATGTGGAACAGGTGAGAGACGAACTCTATAGCCAAAGGAAACCTGCTATAAAAATAACCAGTGATAGCATGTGCTCTCTCTGTAAGAAGAAAATAGGGACGAGCGTTTTCGCGGTCTATCCGAATGGGAAAACACTTGTGCACTTTGTATGCTTTAGAGACTCACAGAACATGAAGGCTGTGTCTAAGGATTCACCCATAAGAAGGCGTACATAA

mRNA sequence

ATGGGGACTCCAAAACTTGGGTTAGCTAAGAAAATTGCTGCAATAGAAGGTGCAGAAGACATGAAAGTTAGTCTTAGTAACACTGACAGTAGCAGGAGTGATGGCGACACTGATGAACCTGGCGAAGAAGGAAGCTCTTCAATTATGCTTGATGAAGCTCTGAACCTGTTCGTCTTCTTTAATCCTAAAATGCAGAACTTGCTACAATTTATTGGACCACTTTTAAGGAAATCCAGTGAGGCGTACAGGAATTCTTCAGTGATAAAGAGTTTGCGACAAAGTGAAAACTTACAGGTGAGAGACGAACTCTATAGCCAAAGGAAACCTGCTATAAAAATAACCAGTGATAGCATGTGCTCTCTCTGTAAGAAGAAAATAGGGACGAGCGTTTTCGCGGTCTATCCGAATGGGAAAACACTTGTGCACTTTGTATGCTTTAGAGACTCACAGAACATGAAGGCTGTGTCTAAGGATTCACCCATAAGAAGGCGTACATAA

Coding sequence (CDS)

ATGGGGACTCCAAAACTTGGGTTAGCTAAGAAAATTGCTGCAATAGAAGGTGCAGAAGACATGAAAGTTAGTCTTAGTAACACTGACAGTAGCAGGAGTGATGGCGACACTGATGAACCTGGCGAAGAAGGAAGCTCTTCAATTATGCTTGATGAAGCTCTGAACCTGTTCGTCTTCTTTAATCCTAAAATGCAGAACTTGCTACAATTTATTGGACCACTTTTAAGGAAATCCAGTGAGGCGTACAGGAATTCTTCAGTGATAAAGAGTTTGCGACAAAGTGAAAACTTACAGGTGAGAGACGAACTCTATAGCCAAAGGAAACCTGCTATAAAAATAACCAGTGATAGCATGTGCTCTCTCTGTAAGAAGAAAATAGGGACGAGCGTTTTCGCGGTCTATCCGAATGGGAAAACACTTGTGCACTTTGTATGCTTTAGAGACTCACAGAACATGAAGGCTGTGTCTAAGGATTCACCCATAAGAAGGCGTACATAA

Protein sequence

MGTPKLGLAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIMLDEALNLFVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRRT
Homology
[Close]
BLAST of CsaV3_4G004980 vs. NCBI nr
Match: XP_004149149.1 (PREDICTED: vam6/Vps39-like protein [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 3.6e-73
Identity = 158/191 (82.72%), Postives = 160/191 (83.77%), Query Frame = 0 

Query: 1   MGTPKLGL-----------AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
           MGTPKLGL           AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM
Sbjct: 806 MGTPKLGLGPSFKVKGGRAAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 865

Query: 61  LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
           LDEALNL                +    K+QNLLQFIGPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 866 LDEALNLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 925

Query: 121 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
           ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 926 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 985

[Close]
BLAST of CsaV3_4G004980 vs. NCBI nr
Match: KGN53245.1 (hypothetical protein Csa_4G038630 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 3.6e-73
Identity = 158/191 (82.72%), Postives = 160/191 (83.77%), Query Frame = 0 

Query: 1   MGTPKLGL-----------AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
           MGTPKLGL           AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM
Sbjct: 780 MGTPKLGLGPSFKVKGGRAAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 839

Query: 61  LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
           LDEALNL                +    K+QNLLQFIGPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 840 LDEALNLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 899

Query: 121 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
           ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 900 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 959

[Close]
BLAST of CsaV3_4G004980 vs. NCBI nr
Match: XP_008453745.1 (PREDICTED: vam6/Vps39-like protein [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 155/191 (81.15%), Postives = 158/191 (82.72%), Query Frame = 0 

Query: 1   MGTPKLG-----------LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
           MGTPKLG            AKKIAAIEGAED KVSLSNTDSSRSDGDTDEPGEEGSSSIM
Sbjct: 807 MGTPKLGSGPSFKVKGGRSAKKIAAIEGAEDTKVSLSNTDSSRSDGDTDEPGEEGSSSIM 866

Query: 61  LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
           LDEALNL                +    K+QNLLQFIGPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 867 LDEALNLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 926

Query: 121 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
           ENLQVRDELY+QRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 927 ENLQVRDELYNQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 986

[Close]
BLAST of CsaV3_4G004980 vs. NCBI nr
Match: XP_022929405.1 (vam6/Vps39-like protein [Cucurbita moschata])

HSP 1 Score: 259.2 bits (661), Expect = 9.4e-66
Identity = 144/191 (75.39%), Postives = 154/191 (80.63%), Query Frame = 0 

Query: 1    MGTPKLG-----------LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
            MGTPKLG            +KKIAAIEGAED K+SLSNT+S RSDGDTDE GEEGSSSIM
Sbjct: 810  MGTPKLGSGPSSKVKGSRASKKIAAIEGAEDTKISLSNTESCRSDGDTDEIGEEGSSSIM 869

Query: 61   LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
            LDEA++L                +    K+QNLLQF+GPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 870  LDEAMDLLSQRWDRINGAQALKLLPKETKLQNLLQFLGPLLRKSSEAYRNSSVIKSLRQS 929

Query: 121  ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
            ENLQVRDELY+QRK +IKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 930  ENLQVRDELYNQRKSSIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 989

[Close]
BLAST of CsaV3_4G004980 vs. NCBI nr
Match: XP_023551827.1 (vam6/Vps39-like protein isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551828.1 vam6/Vps39-like protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 9.4e-66
Identity = 144/191 (75.39%), Postives = 154/191 (80.63%), Query Frame = 0 

Query: 1    MGTPKLG-----------LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
            MGTPKLG            +KKIAAIEGAED K+SLSNT+SSRSDGDTDE GEEGSSSIM
Sbjct: 810  MGTPKLGSGPSSRVKGSRASKKIAAIEGAEDAKISLSNTESSRSDGDTDEIGEEGSSSIM 869

Query: 61   LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
            LDEA++L                +    K+QNLLQF+GPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 870  LDEAMDLLSQRWDRINGAQALKLLPKETKLQNLLQFLGPLLRKSSEAYRNSSVIKSLRQS 929

Query: 121  ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
            ENLQVRDELY+QRK + KITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 930  ENLQVRDELYNQRKSSTKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 989

[Close]
BLAST of CsaV3_4G004980 vs. TAIR10
Match: AT4G36630.1 (Vacuolar sorting protein 39)

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-51
Identity = 112/176 (63.64%), Postives = 130/176 (73.86%), Query Frame = 0 

Query: 5    KLGLAKKIAAIEGAEDMKVSL-SNTDSSRSDGDTDEPGEEGSSSIMLDEALNL------- 64
            K G +KKI AIEGAEDM+V L S+TDS RSD DT+EP EEG S++M+ E L+L       
Sbjct: 825  KGGRSKKIVAIEGAEDMRVGLSSSTDSGRSDVDTEEPLEEGDSTVMISEVLDLLSQRWER 884

Query: 65   --------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRK 124
                     +    K+ NLL F+ PLLR SSEA+RN SVIKSLRQSENLQV++ELY  RK
Sbjct: 885  INGAQALKLLPRETKLHNLLPFLAPLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKHRK 944

Query: 125  PAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRR 165
               ++TS+SMCSLC KKIGTSVFAVYPNGKTLVHFVCFRDSQ MKAVSK +  RRR
Sbjct: 945  GVAQVTSESMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQGMKAVSKTTHGRRR 1000

[Close]
BLAST of CsaV3_4G004980 vs. Swiss-Prot
Match: sp|Q8L5Y0|VPS39_ARATH (Vacuolar sorting protein 39 OS=Arabidopsis thaliana OX=3702 GN=VPS39 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.9e-50
Identity = 112/176 (63.64%), Postives = 130/176 (73.86%), Query Frame = 0 

Query: 5    KLGLAKKIAAIEGAEDMKVSL-SNTDSSRSDGDTDEPGEEGSSSIMLDEALNL------- 64
            K G +KKI AIEGAEDM+V L S+TDS RSD DT+EP EEG S++M+ E L+L       
Sbjct: 825  KGGRSKKIVAIEGAEDMRVGLSSSTDSGRSDVDTEEPLEEGDSTVMISEVLDLLSQRWER 884

Query: 65   --------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRK 124
                     +    K+ NLL F+ PLLR SSEA+RN SVIKSLRQSENLQV++ELY  RK
Sbjct: 885  INGAQALKLLPRETKLHNLLPFLAPLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKHRK 944

Query: 125  PAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRR 165
               ++TS+SMCSLC KKIGTSVFAVYPNGKTLVHFVCFRDSQ MKAVSK +  RRR
Sbjct: 945  GVAQVTSESMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQGMKAVSKTTHGRRR 1000

[Close]
BLAST of CsaV3_4G004980 vs. Swiss-Prot
Match: sp|Q96JC1|VPS39_HUMAN (Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 46  SSIMLDEALNLFVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYS 105
           S +   +ALNL    N ++ ++  F+  +L ++++  R + V+K+L  +E L+V++E   
Sbjct: 780 SKLDTTKALNLLP-ANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERIL 839

Query: 106 QRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRD 149
            ++    IT + +C +CKKKIG S FA YPNG  +VH+ C ++
Sbjct: 840 HQQVKCIITEEKVCMVCKKKIGNSAFARYPNG-VVVHYFCSKE 880

[Close]
BLAST of CsaV3_4G004980 vs. Swiss-Prot
Match: sp|Q8R5L3|VPS39_MOUSE (Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 34/103 (33.01%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 46  SSIMLDEALNLFVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYS 105
           S +   +A+NL    N ++ ++  F+  +L ++++  R + V+K+L  +E L+V++E   
Sbjct: 780 SKLDTTKAINLLP-ANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERIL 839

Query: 106 QRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRD 149
            ++    IT + +C +CKKKIG S FA YPNG  +VH+ C ++
Sbjct: 840 HQQVKCIITEEKVCMVCKKKIGNSAFARYPNG-VVVHYFCSKE 880

[Close]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match: tr|A0A0A0KUC3|A0A0A0KUC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038630 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.4e-73
Identity = 158/191 (82.72%), Postives = 160/191 (83.77%), Query Frame = 0 

Query: 1   MGTPKLGL-----------AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
           MGTPKLGL           AKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM
Sbjct: 780 MGTPKLGLGPSFKVKGGRAAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 839

Query: 61  LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
           LDEALNL                +    K+QNLLQFIGPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 840 LDEALNLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 899

Query: 121 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
           ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 900 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 959

[Close]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match: tr|A0A1S3BX35|A0A1S3BX35_CUCME (vam6/Vps39-like protein OS=Cucumis melo OX=3656 GN=LOC103494389 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-71
Identity = 155/191 (81.15%), Postives = 158/191 (82.72%), Query Frame = 0 

Query: 1   MGTPKLG-----------LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIM 60
           MGTPKLG            AKKIAAIEGAED KVSLSNTDSSRSDGDTDEPGEEGSSSIM
Sbjct: 807 MGTPKLGSGPSFKVKGGRSAKKIAAIEGAEDTKVSLSNTDSSRSDGDTDEPGEEGSSSIM 866

Query: 61  LDEALNL---------------FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 120
           LDEALNL                +    K+QNLLQFIGPLLRKSSEAYRNSSVIKSLRQS
Sbjct: 867 LDEALNLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQS 926

Query: 121 ENLQVRDELYSQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 166
           ENLQVRDELY+QRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA
Sbjct: 927 ENLQVRDELYNQRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKA 986

[Close]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match: tr|F6GWW4|F6GWW4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01750 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 123/172 (71.51%), Postives = 138/172 (80.23%), Query Frame = 0 

Query: 8    LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIMLDEALNL----------- 67
            L KKIA IEGAEDM+VSLS+TDS RSDGD DEP EEG SSIMLDE L+L           
Sbjct: 835  LGKKIAEIEGAEDMRVSLSSTDSGRSDGDADEPSEEGGSSIMLDEVLDLLSRRWDRIHGA 894

Query: 68   ----FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRKPAIK 127
                 +    K+QNLL F+GPLLRKSSEAYRN SVIKSLRQSENLQV+DEL++QRK  ++
Sbjct: 895  QALKLLPRETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELHNQRKTVVR 954

Query: 128  ITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRR 165
            I+SDSMCSLC KKIGTSVFAVYPNGKTLVHFVCFRDSQ+MKAV K SP+R+R
Sbjct: 955  ISSDSMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVVKSSPLRKR 1006

[Close]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match: tr|A0A059AXY4|A0A059AXY4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01269 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.9e-57
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 0 

Query: 8    LAKKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIMLDEALNL----------- 67
            ++KKIAAIEGAEDM+VS SNTDS RSDGD DE  EEG+S+IMLDE L+L           
Sbjct: 846  ISKKIAAIEGAEDMRVSPSNTDSGRSDGDADESSEEGASTIMLDEVLDLLSKRWDRINGG 905

Query: 68   ----FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRKPAIK 127
                 +    K+QNLL F+GPL+RKSSEA RN SVIKSLRQSENLQV+DELY+QRK  +K
Sbjct: 906  QALRLLPRETKLQNLLPFLGPLIRKSSEASRNYSVIKSLRQSENLQVKDELYTQRKAVVK 965

Query: 128  ITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRR 165
            IT DSMCSLC KKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAV+K SP+R+R
Sbjct: 966  ITGDSMCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVTKGSPLRKR 1017

[Close]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match: tr|A0A2P4II46|A0A2P4II46_QUESU (Vam6/vps39-like protein OS=Quercus suber OX=58331 GN=CFP56_29015 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.0e-56
Identity = 122/170 (71.76%), Postives = 137/170 (80.59%), Query Frame = 0 

Query: 10   KKIAAIEGAEDMKVSLSNTDSSRSDGDTDEPGEEGSSSIMLDEALNL------------- 69
            KKIA+IEGAEDM+VS S+TDSSRSDGD DE  EEG S+IMLDE L+L             
Sbjct: 839  KKIASIEGAEDMRVSQSSTDSSRSDGDVDESTEEGGSAIMLDEILDLLSRRWDRLNGAQA 898

Query: 70   --FVFFNPKMQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYSQRKPAIKIT 129
               +    K+QNLL F+GPLLRKSSEAYRN SVIKSLRQSENLQV+DELY+QRK  +KIT
Sbjct: 899  LKLLPRETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYNQRKTVVKIT 958

Query: 130  SDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRR 165
             DS+CSLC KKIGTSVFAVYPNGKTLVHFVCFRDSQ+MKAV+K SP+RRR
Sbjct: 959  GDSLCSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKGSPLRRR 1008

The following BLAST results are available for this feature:
BLAST of CsaV3_4G004980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149149.13.6e-7382.72PREDICTED: vam6/Vps39-like protein [Cucumis sativus][more]
KGN53245.13.6e-7382.72hypothetical protein Csa_4G038630 [Cucumis sativus][more]
XP_008453745.12.0e-7181.15PREDICTED: vam6/Vps39-like protein [Cucumis melo][more]
XP_022929405.19.4e-6675.39vam6/Vps39-like protein [Cucurbita moschata][more]
XP_023551827.19.4e-6675.39vam6/Vps39-like protein isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551828.1 ... [more]
BLAST of CsaV3_4G004980 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36630.11.6e-5163.64Vacuolar sorting protein 39[more]
BLAST of CsaV3_4G004980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8L5Y0|VPS39_ARATH2.9e-5063.64Vacuolar sorting protein 39 OS=Arabidopsis thaliana OX=3702 GN=VPS39 PE=1 SV=1[more]
sp|Q96JC1|VPS39_HUMAN4.2e-0933.98Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2[more]
sp|Q8R5L3|VPS39_MOUSE7.2e-0933.01Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1[more]
BLAST of CsaV3_4G004980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUC3|A0A0A0KUC3_CUCSA2.4e-7382.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038630 PE=4 SV=1[more]
tr|A0A1S3BX35|A0A1S3BX35_CUCME1.3e-7181.15vam6/Vps39-like protein OS=Cucumis melo OX=3656 GN=LOC103494389 PE=4 SV=1[more]
tr|F6GWW4|F6GWW4_VITVI2.4e-5771.51Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01750 PE=4 SV=... [more]
tr|A0A059AXY4|A0A059AXY4_EUCGR6.9e-5770.93Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01269 PE=4 SV... [more]
tr|A0A2P4II46|A0A2P4II46_QUESU2.0e-5671.76Vam6/vps39-like protein OS=Quercus suber OX=58331 GN=CFP56_29015 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: INTERPRO
TermDefinition
IPR032914Vam6/VPS39/TRAP1
IPR019453VPS39/TGF_beta_rcpt-assoc_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0042732 D-xylose metabolic process
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0097576 vacuole fusion
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006486 protein glycosylation
biological_process GO:0044723 single-organism carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0030897 HOPS complex
cellular_component GO:0005622 intracellular
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G004980.1CsaV3_4G004980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019453Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2PFAMPF10367Vps39_2coord: 62..147
e-value: 3.8E-24
score: 85.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..45
NoneNo IPR availablePANTHERPTHR12894:SF18SUBFAMILY NOT NAMEDcoord: 61..164
IPR032914Vam6/VPS39/TRAP1 familyPANTHERPTHR12894CNH DOMAIN CONTAININGcoord: 61..164

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G004980CSPI04G04900Wild cucumber (PI 183967)cpicucB213
CsaV3_4G004980Cucsa.201440Cucumber (Gy14) v1cgycucB323
CsaV3_4G004980CmaCh16G006630Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G004980CmaCh04G007880Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G004980CmoCh16G007210Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G004980CmoCh04G008440Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G004980Cp4.1LG14g01530Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G004980Cp4.1LG01g09560Cucurbita pepo (Zucchini)cpecucB0504
CsaV3_4G004980CsGy4G004800Cucumber (Gy14) v2cgybcucB171
CsaV3_4G004980Carg14184Silver-seed gourdcarcucB0982
CsaV3_4G004980Carg05780Silver-seed gourdcarcucB1063
CsaV3_4G004980Cla014511Watermelon (97103) v1cucwmB322
CsaV3_4G004980MELO3C017565Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G004980ClCG07G009230Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G004980Lsi07G001950Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G004980MELO3C017565.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G004980Cla97C07G136110Watermelon (97103) v2cucwmbB330
CsaV3_4G004980Bhi01G001907Wax gourdcucwgoB381
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_4G004980CsaV3_UNG172360Cucumber (Chinese Long) v3cuccucB176
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G004980Cucurbita pepo (Zucchini)cpecucB0610
CsaV3_4G004980Melon (DHL92) v3.5.1cucmeB273
CsaV3_4G004980Watermelon (97103) v1cucwmB341
CsaV3_4G004980Watermelon (97103) v2cucwmbB268