CsaV3_4G001310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G001310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 745380 .. 745640 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAATCGAAGCGTAGTAGAAACCCTCAATCTGAGATTTGGGAAGAATTTGCCTGAAGCTAGGGTTTTGGGAATCGGAACGAGGACTCGACGGGAAGGAAGAGGATTTTAATGTTTCGACTGGCTCAGTGTATAGTCCGAAGAGAGAATCGACGGCGAACGAGGTCGGGTTATTTTTGGGGGAATTTCAGAATCTGTGATATCGGTCGGATTATTTGACCCGGAAACTCTACGGGACAACCCGAATCATTTGAAGTGA

mRNA sequence

ATGAGAAATCGAAGCGTAGTAGAAACCCTCAATCTGAGATTTGGGAAGAATTTGCCTGAAGCTAGGTCCGAAGAGAGAATCGACGGCGAACGAGGTCGGGTTATTTTTGGGGGAATTTCAGAATCTGTGATATCGGTCGGATTATTTGACCCGGAAACTCTACGGGACAACCCGAATCATTTGAAGTGA

Coding sequence (CDS)

ATGAGAAATCGAAGCGTAGTAGAAACCCTCAATCTGAGATTTGGGAAGAATTTGCCTGAAGCTAGGTCCGAAGAGAGAATCGACGGCGAACGAGGTCGGGTTATTTTTGGGGGAATTTCAGAATCTGTGATATCGGTCGGATTATTTGACCCGGAAACTCTACGGGACAACCCGAATCATTTGAAGTGA

Protein sequence

MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNHLK
Homology
[Close]
BLAST of CsaV3_4G001310 vs. NCBI nr
Match: KGN52864.1 (hypothetical protein Csa_4G004260 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 9.5e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH 60
          MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH
Sbjct: 1  MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH 60

Query: 61 LK 63
          LK
Sbjct: 61 LK 62

[Close]
BLAST of CsaV3_4G001310 vs. TrEMBL
Match: tr|A0A0A0KVC4|A0A0A0KVC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004260 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH 60
          MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH
Sbjct: 1  MRNRSVVETLNLRFGKNLPEARSEERIDGERGRVIFGGISESVISVGLFDPETLRDNPNH 60

Query: 61 LK 63
          LK
Sbjct: 61 LK 62

The following BLAST results are available for this feature:
BLAST of CsaV3_4G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52864.19.5e-27100.00hypothetical protein Csa_4G004260 [Cucumis sativus][more]
BLAST of CsaV3_4G001310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G001310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G001310 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVC4|A0A0A0KVC4_CUCSA6.3e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004260 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G001310.1CsaV3_4G001310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G001310Silver-seed gourdcarcucB0803
CsaV3_4G001310Cucumber (Gy14) v2cgybcucB171
CsaV3_4G001310Cucumber (Gy14) v1cgycucB102
CsaV3_4G001310Cucurbita maxima (Rimu)cmacucB0567
CsaV3_4G001310Cucurbita moschata (Rifu)cmocucB0554
CsaV3_4G001310Cucurbita pepo (Zucchini)cpecucB0703
CsaV3_4G001310Wild cucumber (PI 183967)cpicucB213
CsaV3_4G001310Bottle gourd (USVL1VR-Ls)cuclsiB296
CsaV3_4G001310Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G001310Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G001310Watermelon (Charleston Gray)cucwcgB279
CsaV3_4G001310Watermelon (97103) v1cucwmB300
CsaV3_4G001310Watermelon (97103) v2cucwmbB273
CsaV3_4G001310Wax gourdcucwgoB360