CsaV3_4G000410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000410
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 246741 .. 247035 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAGTAAGAGAGAAAGAAGAGGAAATGGGGAGAGGGGTTAATGAAATTTTTAAAGAAGGGAGAAAAGAAAAGAGATTGGTCTTAAATGGGAAGAGGGTTTAAGAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

mRNA sequence

ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

Coding sequence (CDS)

ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

Protein sequence

MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKSAVET
Homology
[Close]
BLAST of CsaV3_4G000410 vs. NCBI nr
Match: KGN52772.1 (hypothetical protein Csa_4G000920 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60
          MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS
Sbjct: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60

Query: 61 AVET 65
          AVET
Sbjct: 61 AVET 64

[Close]
BLAST of CsaV3_4G000410 vs. TrEMBL
Match: tr|A0A0A0KWF5|A0A0A0KWF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000920 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60
          MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS
Sbjct: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60

Query: 61 AVET 65
          AVET
Sbjct: 61 AVET 64

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52772.12.4e-25100.00hypothetical protein Csa_4G000920 [Cucumis sativus][more]
BLAST of CsaV3_4G000410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWF5|A0A0A0KWF5_CUCSA1.6e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000920 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000410.1CsaV3_4G000410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G000410CSPI04G00460Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G000410Cucumber (Chinese Long) v3cuccucB165
CsaV3_4G000410Silver-seed gourdcarcucB0328
CsaV3_4G000410Silver-seed gourdcarcucB0406
CsaV3_4G000410Cucumber (Gy14) v2cgybcucB171
CsaV3_4G000410Cucumber (Gy14) v2cgybcucB178
CsaV3_4G000410Cucumber (Gy14) v2cgybcucB338
CsaV3_4G000410Cucumber (Gy14) v1cgycucB102
CsaV3_4G000410Cucumber (Gy14) v1cgycucB339
CsaV3_4G000410Cucumber (Gy14) v1cgycucB537
CsaV3_4G000410Cucurbita maxima (Rimu)cmacucB0388
CsaV3_4G000410Cucurbita maxima (Rimu)cmacucB0843
CsaV3_4G000410Cucurbita moschata (Rifu)cmocucB0385
CsaV3_4G000410Cucurbita moschata (Rifu)cmocucB0829
CsaV3_4G000410Cucurbita pepo (Zucchini)cpecucB0263
CsaV3_4G000410Cucurbita pepo (Zucchini)cpecucB0499
CsaV3_4G000410Wild cucumber (PI 183967)cpicucB227
CsaV3_4G000410Wild cucumber (PI 183967)cpicucB404
CsaV3_4G000410Bottle gourd (USVL1VR-Ls)cuclsiB296
CsaV3_4G000410Melon (DHL92) v3.5.1cucmeB282
CsaV3_4G000410Melon (DHL92) v3.5.1cucmeB314
CsaV3_4G000410Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G000410Melon (DHL92) v3.5.1cucmeB345
CsaV3_4G000410Melon (DHL92) v3.6.1cucmedB275
CsaV3_4G000410Melon (DHL92) v3.6.1cucmedB306
CsaV3_4G000410Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G000410Watermelon (Charleston Gray)cucwcgB279
CsaV3_4G000410Watermelon (Charleston Gray)cucwcgB308
CsaV3_4G000410Watermelon (97103) v1cucwmB300
CsaV3_4G000410Watermelon (97103) v2cucwmbB273
CsaV3_4G000410Watermelon (97103) v2cucwmbB295
CsaV3_4G000410Wax gourdcucwgoB360