CsaV3_4G000280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGlycyl-tRNA synthetase beta subunit
Locationchr4 : 182929 .. 183671 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGTTTCGATATCAAACTAGTGGAGATGTGAAAACATATGTGTCGACATCCGGAATAGTGTTTAGTTAATTTAAGTCCTTTTAAAATACATTTTCAATATATATATATATAAATAATGTTGTTGAAAAAAGTGTTCACAAAAATACAACAAAAATCCCTTTCCTGTTCACACAATTATATAATCACTATCCCTCCCTCCCTATAAAAACAAACCCTTTGAACTATAGGATCCATATACTCGAAAAGAAAAGAAAAAATATCATATATGATGGAGATGAGAAAGAAGGTTGGTTTGTTAGCAATGGCGGTCCTGATGCTCATGGTCATTTCAGCTCGAGCCACCTCCTCCGAAGTCGGTGGGGTGATTGAACTCCCGTCCGATGAGGCGAGCGAGGTTGTGCCAACGAATATGGAGATGTGGTCGAGGAAAATGATGAAAGAAGGAGGCCGAAAGGGAGACAATGGACTATGCTTGATTATAGGCACTCCATGCAACAGCGATGCAAACTGCTTATCTGGGTGCAAGTGCAGAACAACTCTAATATTAAAACTGGGATTATGTAGTCCCTTTTGATTATCAATTTATGTATGTTTTCCTTTATAACCTAAGATGGTTATTACTAATATATATGTATTTGTGGAAGTTATTAGAATAACTTTGTACCCATTTTCTATGTTCTCATGCTTTTCAAGAATAAAGTGGAGTTTTTTCTCTGATCTCAATATTAAACTTCTATCTAAA

mRNA sequence

ATGATGGAGATGAGAAAGAAGGTTGGTTTGTTAGCAATGGCGGTCCTGATGCTCATGGTCATTTCAGCTCGAGCCACCTCCTCCGAAGTCGGTGGGGTGATTGAACTCCCGTCCGATGAGGCGAGCGAGGTTGTGCCAACGAATATGGAGATGTGGTCGAGGAAAATGATGAAAGAAGGAGGCCGAAAGGGAGACAATGGACTATGCTTGATTATAGGCACTCCATGCAACAGCGATGCAAACTGCTTATCTGGGTGCAAGTGCAGAACAACTCTAATATTAAAACTGGGATTATGTAGTCCCTTTTGA

Coding sequence (CDS)

ATGATGGAGATGAGAAAGAAGGTTGGTTTGTTAGCAATGGCGGTCCTGATGCTCATGGTCATTTCAGCTCGAGCCACCTCCTCCGAAGTCGGTGGGGTGATTGAACTCCCGTCCGATGAGGCGAGCGAGGTTGTGCCAACGAATATGGAGATGTGGTCGAGGAAAATGATGAAAGAAGGAGGCCGAAAGGGAGACAATGGACTATGCTTGATTATAGGCACTCCATGCAACAGCGATGCAAACTGCTTATCTGGGTGCAAGTGCAGAACAACTCTAATATTAAAACTGGGATTATGTAGTCCCTTTTGA

Protein sequence

MMEMRKKVGLLAMAVLMLMVISARATSSEVGGVIELPSDEASEVVPTNMEMWSRKMMKEGGRKGDNGLCLIIGTPCNSDANCLSGCKCRTTLILKLGLCSPF
Homology
[Close]
BLAST of CsaV3_4G000280 vs. NCBI nr
Match: KGN52759.1 (Glycyl-tRNA synthetase beta subunit [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 9.8e-05
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 13 MAVLMLMVISARATSSEVGGVIELPSDEASEVV 46
          MAVLMLMVISARATSSEVGGVIELPSDEASE +
Sbjct: 1  MAVLMLMVISARATSSEVGGVIELPSDEASEAL 33

[Close]
BLAST of CsaV3_4G000280 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_4G000770 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 5   RKKVGLLAMAVLMLMVISARATS-SEVGGVIELPSDEASEVVPTNMEMWSRKM-MKEGGR 64
           +K + +LAM  ++L+  S RAT    +    E+ SDE ++     M    RK+ ++ GG 
Sbjct: 3   KKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNK-AGLEMIFAPRKLKLRNGGS 62

Query: 65  KGDNGLCLIIGTPCNSDANCLSGCKCRTTLILKLGLC 100
           +   G+CL++G PC SDA+C SGC C+   +L +G C
Sbjct: 63  R--LGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYC 96

[Close]
BLAST of CsaV3_4G000280 vs. TrEMBL
Match: tr|A0A0A0KV17|A0A0A0KV17_CUCSA (Glycyl-tRNA synthetase beta subunit OS=Cucumis sativus OX=3659 GN=Csa_4G000800 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-05
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 13 MAVLMLMVISARATSSEVGGVIELPSDEASEVV 46
          MAVLMLMVISARATSSEVGGVIELPSDEASE +
Sbjct: 1  MAVLMLMVISARATSSEVGGVIELPSDEASEAL 33

[Close]
BLAST of CsaV3_4G000280 vs. TrEMBL
Match: tr|A0A0A0KY29|A0A0A0KY29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 5   RKKVGLLAMAVLMLMVISARATS-SEVGGVIELPSDEASEVVPTNMEMWSRKM-MKEGGR 64
           +K + +LAM  ++L+  S RAT    +    E+ SDE ++     M    RK+ ++ GG 
Sbjct: 3   KKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNK-AGLEMIFAPRKLKLRNGGS 62

Query: 65  KGDNGLCLIIGTPCNSDANCLSGCKCRTTLILKLGLC 100
           +   G+CL++G PC SDA+C SGC C+   +L +G C
Sbjct: 63  R--LGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYC 96

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52759.19.8e-0593.94Glycyl-tRNA synthetase beta subunit [Cucumis sativus][more]
KGN52756.16.3e-0436.08hypothetical protein Csa_4G000770 [Cucumis sativus][more]
BLAST of CsaV3_4G000280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KV17|A0A0A0KV17_CUCSA6.5e-0593.94Glycyl-tRNA synthetase beta subunit OS=Cucumis sativus OX=3659 GN=Csa_4G000800 P... [more]
tr|A0A0A0KY29|A0A0A0KY29_CUCSA4.2e-0436.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000280.1CsaV3_4G000280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G000280CsGy4G000270Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G000280Cucumber (Chinese Long) v3cuccucB165
CsaV3_4G000280Silver-seed gourdcarcucB0328
CsaV3_4G000280Silver-seed gourdcarcucB0406
CsaV3_4G000280Cucumber (Gy14) v2cgybcucB178
CsaV3_4G000280Cucumber (Gy14) v2cgybcucB338
CsaV3_4G000280Cucumber (Gy14) v1cgycucB339
CsaV3_4G000280Cucumber (Gy14) v1cgycucB537
CsaV3_4G000280Cucurbita maxima (Rimu)cmacucB0388
CsaV3_4G000280Cucurbita maxima (Rimu)cmacucB0843
CsaV3_4G000280Cucurbita moschata (Rifu)cmocucB0385
CsaV3_4G000280Cucurbita moschata (Rifu)cmocucB0829
CsaV3_4G000280Cucurbita pepo (Zucchini)cpecucB0263
CsaV3_4G000280Cucurbita pepo (Zucchini)cpecucB0499
CsaV3_4G000280Wild cucumber (PI 183967)cpicucB213
CsaV3_4G000280Wild cucumber (PI 183967)cpicucB227
CsaV3_4G000280Wild cucumber (PI 183967)cpicucB404
CsaV3_4G000280Bottle gourd (USVL1VR-Ls)cuclsiB296
CsaV3_4G000280Melon (DHL92) v3.5.1cucmeB282
CsaV3_4G000280Melon (DHL92) v3.5.1cucmeB314
CsaV3_4G000280Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G000280Melon (DHL92) v3.5.1cucmeB345
CsaV3_4G000280Melon (DHL92) v3.6.1cucmedB275
CsaV3_4G000280Melon (DHL92) v3.6.1cucmedB306
CsaV3_4G000280Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G000280Watermelon (Charleston Gray)cucwcgB279
CsaV3_4G000280Watermelon (Charleston Gray)cucwcgB308
CsaV3_4G000280Watermelon (97103) v1cucwmB300
CsaV3_4G000280Watermelon (97103) v2cucwmbB273
CsaV3_4G000280Watermelon (97103) v2cucwmbB295
CsaV3_4G000280Wax gourdcucwgoB360