CsaV3_3G049620 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G049620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 40451302 .. 40451652 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

mRNA sequence

ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

Coding sequence (CDS)

ATGAGTTATTTAAAAATGAAATTAAATCAAACCCTCCTGCAGTTCGCTTCGCACTTCGCATTCCTTCGTCTTCGGCGCCAGTCCTTCGTTTTCGTTTTCGTCTTCGGCGCCAGTCCTTCGTCTTCGTCCTTCGTTAATTCTTCATTCGTCTTCCTCCTACACGAGTTCACGTGGGTTCGTCTTCTTCATTCGTGGGTTCGTTCTCCACTCTCCGTTCTCCACTCTCCGTTCGTCGCCATTCGCCATTTTCCGTTCTCTGTGGGTTCGTTCGCTGCAAAATTTTCAGGCCAGGCCATCTTGATTCTCATCGTGGATCTTCTCTTTCTCTTCTTGGATCGAAATCGCGGGTAA

Protein sequence

MSYLKMKLNQTLLQFASHFAFLRLRRQSFVFVFVFGASPSSSSFVNSSFVFLLHEFTWVRLLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Homology
[Close]
BLAST of CsaV3_3G049620 vs. NCBI nr
Match: KGN60438.1 (hypothetical protein Csa_3G910750 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 9.0e-47
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR 60
           MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR
Sbjct: 1   MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR 60

Query: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
           LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116

[Close]
BLAST of CsaV3_3G049620 vs. NCBI nr
Match: KGN57611.1 (hypothetical protein Csa_3G229370 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 46  NSSFVFLLHEFTWVRL----LH----SWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQ 105
           + SFVF++ +F ++RL    +H    +WV SP S+L SPFVAIRH PFSVGSFAAKFS Q
Sbjct: 4   SKSFVFVVRQF-FIRLPPTRVHVGSFTWVPSPFSILRSPFVAIRHSPFSVGSFAAKFSSQ 63

Query: 106 AILILIVDLLFLFLDRNRG 117
            I ILIVDLLFLFLDRN G
Sbjct: 64  VISILIVDLLFLFLDRNSG 81

[Close]
BLAST of CsaV3_3G049620 vs. TrEMBL
Match: tr|A0A0A0LF89|A0A0A0LF89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.9e-47
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR 60
           MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR
Sbjct: 1   MSYLKMKLNQTLLQFASHFAFLRLRRXXXXXXXXXXXXXXSSSFVNSSFVFLLHEFTWVR 60

Query: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 117
           LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG
Sbjct: 61  LLHSWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQAILILIVDLLFLFLDRNRG 116

[Close]
BLAST of CsaV3_3G049620 vs. TrEMBL
Match: tr|A0A0A0LC45|A0A0A0LC45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229370 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 46  NSSFVFLLHEFTWVRL----LH----SWVRSPLSVLHSPFVAIRHFPFSVGSFAAKFSGQ 105
           + SFVF++ +F ++RL    +H    +WV SP S+L SPFVAIRH PFSVGSFAAKFS Q
Sbjct: 4   SKSFVFVVRQF-FIRLPPTRVHVGSFTWVPSPFSILRSPFVAIRHSPFSVGSFAAKFSSQ 63

Query: 106 AILILIVDLLFLFLDRNRG 117
            I ILIVDLLFLFLDRN G
Sbjct: 64  VISILIVDLLFLFLDRNSG 81

The following BLAST results are available for this feature:
BLAST of CsaV3_3G049620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60438.19.0e-47100.00hypothetical protein Csa_3G910750 [Cucumis sativus][more]
KGN57611.13.1e-1564.56hypothetical protein Csa_3G229370 [Cucumis sativus][more]
BLAST of CsaV3_3G049620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G049620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G049620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF89|A0A0A0LF89_CUCSA5.9e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910750 PE=4 SV=1[more]
tr|A0A0A0LC45|A0A0A0LC45_CUCSA2.1e-1564.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G049620.1CsaV3_3G049620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G049620Cucsa.313590Cucumber (Gy14) v1cgycucB487
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G049620Cucumber (Chinese Long) v3cuccucB109
CsaV3_3G049620Cucumber (Chinese Long) v3cuccucB111
CsaV3_3G049620Silver-seed gourdcarcucB0600
CsaV3_3G049620Silver-seed gourdcarcucB0746
CsaV3_3G049620Silver-seed gourdcarcucB0820
CsaV3_3G049620Cucumber (Gy14) v2cgybcucB117
CsaV3_3G049620Cucumber (Gy14) v2cgybcucB118
CsaV3_3G049620Cucumber (Gy14) v2cgybcucB120
CsaV3_3G049620Cucumber (Gy14) v1cgycucB388
CsaV3_3G049620Cucumber (Gy14) v1cgycucB500
CsaV3_3G049620Cucurbita maxima (Rimu)cmacucB0377
CsaV3_3G049620Cucurbita maxima (Rimu)cmacucB0616
CsaV3_3G049620Cucurbita maxima (Rimu)cmacucB0717
CsaV3_3G049620Cucurbita maxima (Rimu)cmacucB0983
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0290
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0376
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0600
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0610
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0704
CsaV3_3G049620Cucurbita moschata (Rifu)cmocucB0966
CsaV3_3G049620Cucurbita pepo (Zucchini)cpecucB0037
CsaV3_3G049620Cucurbita pepo (Zucchini)cpecucB0251
CsaV3_3G049620Cucurbita pepo (Zucchini)cpecucB0766
CsaV3_3G049620Cucurbita pepo (Zucchini)cpecucB0894
CsaV3_3G049620Wild cucumber (PI 183967)cpicucB145
CsaV3_3G049620Wild cucumber (PI 183967)cpicucB146
CsaV3_3G049620Wild cucumber (PI 183967)cpicucB150
CsaV3_3G049620Bottle gourd (USVL1VR-Ls)cuclsiB232
CsaV3_3G049620Bottle gourd (USVL1VR-Ls)cuclsiB241
CsaV3_3G049620Bottle gourd (USVL1VR-Ls)cuclsiB251
CsaV3_3G049620Melon (DHL92) v3.5.1cucmeB219
CsaV3_3G049620Melon (DHL92) v3.5.1cucmeB241
CsaV3_3G049620Melon (DHL92) v3.5.1cucmeB251
CsaV3_3G049620Melon (DHL92) v3.6.1cucmedB212
CsaV3_3G049620Melon (DHL92) v3.6.1cucmedB236
CsaV3_3G049620Melon (DHL92) v3.6.1cucmedB242
CsaV3_3G049620Watermelon (Charleston Gray)cucwcgB182
CsaV3_3G049620Watermelon (Charleston Gray)cucwcgB196
CsaV3_3G049620Watermelon (Charleston Gray)cucwcgB236
CsaV3_3G049620Watermelon (97103) v1cucwmB192
CsaV3_3G049620Watermelon (97103) v1cucwmB213
CsaV3_3G049620Watermelon (97103) v1cucwmB247
CsaV3_3G049620Watermelon (97103) v2cucwmbB184
CsaV3_3G049620Watermelon (97103) v2cucwmbB214
CsaV3_3G049620Watermelon (97103) v2cucwmbB254
CsaV3_3G049620Wax gourdcucwgoB246
CsaV3_3G049620Wax gourdcucwgoB285
CsaV3_3G049620Wax gourdcucwgoB307
CsaV3_3G049620Wax gourdcucwgoB312