CsaV3_3G048160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G048160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 39334118 .. 39334428 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAGTATGAATATAAGTTGAGAAGCACGAAGATGGAGGTCGATGAAGATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

mRNA sequence

ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

Coding sequence (CDS)

ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

Protein sequence

MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEEENGLYVMPHARRPKTVVPGYEEAEQFDV
Homology
[Close]
BLAST of CsaV3_3G048160 vs. NCBI nr
Match: KGN60280.1 (hypothetical protein Csa_3G893300 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.1e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60
          MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE
Sbjct: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60

Query: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 89
          ENGLYVMPHARRPKTVVPGYEEAEQFDV
Sbjct: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 88

[Close]
BLAST of CsaV3_3G048160 vs. TrEMBL
Match: tr|A0A0A0LE35|A0A0A0LE35_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60
          MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE
Sbjct: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60

Query: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 89
          ENGLYVMPHARRPKTVVPGYEEAEQFDV
Sbjct: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 88

The following BLAST results are available for this feature:
BLAST of CsaV3_3G048160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60280.13.1e-39100.00hypothetical protein Csa_3G893300 [Cucumis sativus][more]
BLAST of CsaV3_3G048160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G048160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G048160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE35|A0A0A0LE35_CUCSA2.0e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G048160.1CsaV3_3G048160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..37

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G048160CSPI03G45710Wild cucumber (PI 183967)cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G048160Watermelon (97103) v2cucwmbB181
CsaV3_3G048160Watermelon (97103) v2cucwmbB192
CsaV3_3G048160Wax gourdcucwgoB346
CsaV3_3G048160Cucumber (Chinese Long) v3cuccucB149
CsaV3_3G048160Silver-seed gourdcarcucB0067
CsaV3_3G048160Silver-seed gourdcarcucB0666
CsaV3_3G048160Silver-seed gourdcarcucB0699
CsaV3_3G048160Silver-seed gourdcarcucB0862
CsaV3_3G048160Cucumber (Gy14) v2cgybcucB117
CsaV3_3G048160Cucumber (Gy14) v2cgybcucB278
CsaV3_3G048160Cucumber (Gy14) v1cgycucB122
CsaV3_3G048160Cucumber (Gy14) v1cgycucB487
CsaV3_3G048160Cucurbita maxima (Rimu)cmacucB0021
CsaV3_3G048160Cucurbita maxima (Rimu)cmacucB0210
CsaV3_3G048160Cucurbita maxima (Rimu)cmacucB0546
CsaV3_3G048160Cucurbita maxima (Rimu)cmacucB0787
CsaV3_3G048160Cucurbita maxima (Rimu)cmacucB0939
CsaV3_3G048160Cucurbita moschata (Rifu)cmocucB0009
CsaV3_3G048160Cucurbita moschata (Rifu)cmocucB0195
CsaV3_3G048160Cucurbita moschata (Rifu)cmocucB0531
CsaV3_3G048160Cucurbita moschata (Rifu)cmocucB0770
CsaV3_3G048160Cucurbita moschata (Rifu)cmocucB0929
CsaV3_3G048160Cucurbita pepo (Zucchini)cpecucB0122
CsaV3_3G048160Cucurbita pepo (Zucchini)cpecucB0685
CsaV3_3G048160Cucurbita pepo (Zucchini)cpecucB0964
CsaV3_3G048160Cucurbita pepo (Zucchini)cpecucB1020
CsaV3_3G048160Bottle gourd (USVL1VR-Ls)cuclsiB183
CsaV3_3G048160Bottle gourd (USVL1VR-Ls)cuclsiB208
CsaV3_3G048160Melon (DHL92) v3.5.1cucmeB219
CsaV3_3G048160Melon (DHL92) v3.5.1cucmeB264
CsaV3_3G048160Melon (DHL92) v3.6.1cucmedB212
CsaV3_3G048160Melon (DHL92) v3.6.1cucmedB259
CsaV3_3G048160Watermelon (Charleston Gray)cucwcgB202
CsaV3_3G048160Watermelon (Charleston Gray)cucwcgB270
CsaV3_3G048160Watermelon (97103) v1cucwmB217
CsaV3_3G048160Watermelon (97103) v1cucwmB274
CsaV3_3G048160Watermelon (97103) v1cucwmB280