CsaV3_3G047210 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G047210
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA topoisomerase 1 isoform X2
Locationchr3 : 38498445 .. 38498601 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCCAGAAGTTCATGCAGTCAAACATAAAGACCATGAAGAAAGCGGACGGGATGAACTGTTCAGAATTCTGAATGCATTGAAGGTATCAAGGTTTCACCGTATTATTGCTTCATGGTCTTTATGTTTGATTGCATCAACTTCTGAATGCATTGAAG

mRNA sequence

GATCCAGAAGTTCATGCAGTCAAACATAAAGACCATGAAGAAAGCGGACGGGATGAACTGTTCAGAATTCTGAATGCATTGAAGGTATCAAGGTTTCACCGTATTATTGCTTCATGGTCTTTATGTTTGATTGCATCAACTTCTGAATGCATTGAAG

Coding sequence (CDS)

GATCCAGAAGTTCATGCAGTCAAACATAAAGACCATGAAGAAAGCGGACGGGATGAACTGTTCAGAATTCTGAATGCATTGAAGGTATCAAGGTTTCACCGTATTATTGCTTCATGGTCTTTATGTTTGATTGCATCAACTTCTGAATGCATTGAAG

Protein sequence

DPEVHAVKHKDHEESGRDELFRILNALKVSRFHRIIASWSLCLIASTSECIEX
Homology
[Close]
BLAST of CsaV3_3G047210 vs. NCBI nr
Match: XP_016903545.1 (PREDICTED: DNA topoisomerase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPEVHAVKHKDHEESGRDELFRILN LK
Sbjct: 851 DPEVHAVKHKDHEESGRDELFRILNPLK 878

[Close]
BLAST of CsaV3_3G047210 vs. NCBI nr
Match: XP_016903546.1 (PREDICTED: DNA topoisomerase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPEVHAVKHKDHEESGRDELFRILN LK
Sbjct: 851 DPEVHAVKHKDHEESGRDELFRILNPLK 878

[Close]
BLAST of CsaV3_3G047210 vs. NCBI nr
Match: XP_011652538.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101210823 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-05
Identity = 25/28 (89.29%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPEVHAVKH++HEESG+DELFRILNALK
Sbjct: 787 DPEVHAVKHENHEESGQDELFRILNALK 814

[Close]
BLAST of CsaV3_3G047210 vs. NCBI nr
Match: XP_011652536.1 (PREDICTED: uncharacterized protein LOC101210581 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPE  AVKHKDHE++GRDELFRILNALK
Sbjct: 770 DPEADAVKHKDHEDNGRDELFRILNALK 797

[Close]
BLAST of CsaV3_3G047210 vs. TrEMBL
Match: tr|A0A1S4E5M8|A0A1S4E5M8_CUCME (DNA topoisomerase 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503742 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPEVHAVKHKDHEESGRDELFRILN LK
Sbjct: 851 DPEVHAVKHKDHEESGRDELFRILNPLK 878

[Close]
BLAST of CsaV3_3G047210 vs. TrEMBL
Match: tr|A0A1S4E6F1|A0A1S4E6F1_CUCME (DNA topoisomerase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503742 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   DPEVHAVKHKDHEESGRDELFRILNALK 29
           DPEVHAVKHKDHEESGRDELFRILN LK
Sbjct: 851 DPEVHAVKHKDHEESGRDELFRILNPLK 878

The following BLAST results are available for this feature:
BLAST of CsaV3_3G047210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903545.17.8e-0696.43PREDICTED: DNA topoisomerase 1 isoform X1 [Cucumis melo][more]
XP_016903546.17.8e-0696.43PREDICTED: DNA topoisomerase 1 isoform X2 [Cucumis melo][more]
XP_011652538.16.6e-0589.29PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101210823 [Cucumis sa... [more]
XP_011652536.13.3e-0485.71PREDICTED: uncharacterized protein LOC101210581 [Cucumis sativus][more]
BLAST of CsaV3_3G047210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G047210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G047210 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5M8|A0A1S4E5M8_CUCME5.1e-0696.43DNA topoisomerase 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503742 PE=3 SV=1[more]
tr|A0A1S4E6F1|A0A1S4E6F1_CUCME5.1e-0696.43DNA topoisomerase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503742 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006265 DNA topological change
cellular_component GO:0005575 cellular_component
cellular_component GO:0005694 chromosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003917 DNA topoisomerase type I activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G047210.1CsaV3_3G047210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G047210CsGy3G042240Cucumber (Gy14) v2cgybcucB117
CsaV3_3G047210MELO3C003609Melon (DHL92) v3.5.1cucmeB219
CsaV3_3G047210Lsi04G022060Bottle gourd (USVL1VR-Ls)cuclsiB208
CsaV3_3G047210MELO3C003609.2Melon (DHL92) v3.6.1cucmedB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G047210Wax gourdcucwgoB319
CsaV3_3G047210Wax gourdcucwgoB346
CsaV3_3G047210Cucumber (Chinese Long) v3cuccucB075
CsaV3_3G047210Silver-seed gourdcarcucB0068
CsaV3_3G047210Silver-seed gourdcarcucB0589
CsaV3_3G047210Silver-seed gourdcarcucB0666
CsaV3_3G047210Silver-seed gourdcarcucB1022
CsaV3_3G047210Cucumber (Gy14) v2cgybcucB074
CsaV3_3G047210Cucumber (Gy14) v1cgycucB252
CsaV3_3G047210Cucumber (Gy14) v1cgycucB487
CsaV3_3G047210Cucurbita maxima (Rimu)cmacucB0021
CsaV3_3G047210Cucurbita maxima (Rimu)cmacucB0214
CsaV3_3G047210Cucurbita maxima (Rimu)cmacucB0537
CsaV3_3G047210Cucurbita maxima (Rimu)cmacucB0942
CsaV3_3G047210Cucurbita moschata (Rifu)cmocucB0009
CsaV3_3G047210Cucurbita moschata (Rifu)cmocucB0199
CsaV3_3G047210Cucurbita moschata (Rifu)cmocucB0522
CsaV3_3G047210Cucurbita moschata (Rifu)cmocucB0931
CsaV3_3G047210Cucurbita pepo (Zucchini)cpecucB0125
CsaV3_3G047210Cucurbita pepo (Zucchini)cpecucB0694
CsaV3_3G047210Cucurbita pepo (Zucchini)cpecucB0964
CsaV3_3G047210Cucurbita pepo (Zucchini)cpecucB1022
CsaV3_3G047210Wild cucumber (PI 183967)cpicucB095
CsaV3_3G047210Wild cucumber (PI 183967)cpicucB145
CsaV3_3G047210Bottle gourd (USVL1VR-Ls)cuclsiB261
CsaV3_3G047210Melon (DHL92) v3.5.1cucmeB199
CsaV3_3G047210Melon (DHL92) v3.6.1cucmedB190
CsaV3_3G047210Watermelon (Charleston Gray)cucwcgB244
CsaV3_3G047210Watermelon (Charleston Gray)cucwcgB272
CsaV3_3G047210Watermelon (97103) v1cucwmB219
CsaV3_3G047210Watermelon (97103) v1cucwmB259
CsaV3_3G047210Watermelon (97103) v2cucwmbB223
CsaV3_3G047210Watermelon (97103) v2cucwmbB251