CsaV3_3G044130 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G044130
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 36001454 .. 36002115 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCAGATGTAACACTTCAATTTATGGGTTTTAACACAACAAGGGACCTTTGGAAAGTGATTCAAGACTTATTTGGAGTTCAATCAAGAGTTGAAGAAGATTTTCTTCATCAAACCTTTTATACTACTCGAAAAGATAATTATACGATGGAAGATTACTTGAGAATTATGAAAACCAACACGGATAATCTCAGTCAGGCCGGGAGCCCTGTACCTCCTCGCTCTTCAATTTCACAGGTGTTATTACTCATGGTTAATTAGATATGCAGTCAGAACTATGATATTTGAAAAGCGCTTTGAACACCAAAATTCTCAAGAAATCCTAGAAATGTTGTCTCAAATGTCGCTATCAATATGGCGCAAAATAAAGGGAGTGATAATCGACAGAATTCTAATTCCTATCAATTTGGTGGAAATCGATTTAATCAAAATAGACAGCGCAGTAGGAACAACTTCAATGGCCGTGGGCGTGGTCGAGGAAGAGGTAATAAATCTACATGTCACGTATGTGGAAAATATGGACAGTCAGCTTTAGTTTGTTATAACAGATACACCAAGAGTTTGTTGAAAATGTGAATCAGAACAAGGGACATAATCCAAGCAACAATGGAAATCAAAGTTTAGCTACTGCCTTTATAGTTACTCAGAACCCGACTTGA

mRNA sequence

ATGGTGCCAGATGTAACACTTCAATTTATGGGTTTTAACACAACAAGGGACCTTTGGAAAGTGATTCAAGACTTATTTGGAGTTCAATCAAGAGTTGAAGAAGATTTTCTTCATCAAACCTTTTATACTACTCGAAAAGATAATTATACGATGGAAGATTACTTGAGAATTATGAAAACCAACACGGATAATCTCAGTCAGGCCGGGAGCCCTGTACCTCCTCGCTCTTCAATTTCACAGGGAGTGATAATCGACAGAATTCTAATTCCTATCAATTTGGTGGAAATCGATTTAATCAAAATAGACAGCGCAGTAGGAACAACTTCAATGGCCGTGGGCGTGGTCGAGGAAGAGAACAAGGGACATAATCCAAGCAACAATGGAAATCAAAGTTTAGCTACTGCCTTTATAGTTACTCAGAACCCGACTTGA

Coding sequence (CDS)

ATGGTGCCAGATGTAACACTTCAATTTATGGGTTTTAACACAACAAGGGACCTTTGGAAAGTGATTCAAGACTTATTTGGAGTTCAATCAAGAGTTGAAGAAGATTTTCTTCATCAAACCTTTTATACTACTCGAAAAGATAATTATACGATGGAAGATTACTTGAGAATTATGAAAACCAACACGGATAATCTCAGTCAGGCCGGGAGCCCTGTACCTCCTCGCTCTTCAATTTCACAGGGAGTGATAATCGACAGAATTCTAATTCCTATCAATTTGGTGGAAATCGATTTAATCAAAATAGACAGCGCAGTAGGAACAACTTCAATGGCCGTGGGCGTGGTCGAGGAAGAGAACAAGGGACATAATCCAAGCAACAATGGAAATCAAAGTTTAGCTACTGCCTTTATAGTTACTCAGAACCCGACTTGA

Protein sequence

MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKTNTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENKGHNPSNNGNQSLATAFIVTQNPT

Homology

[Close]

BLAST of CsaV3_3G044130 vs. NCBI nr
Match: KGN59849.1 (hypothetical protein Csa_3G850540 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 5.3e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
           MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT
Sbjct: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 61  NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK 120
           NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK
Sbjct: 61  NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK 120

Query: 121 GHNPSNNGNQSLATAFIVTQNPT 144
           GHNPSNNGNQSLATAFIVTQNPT
Sbjct: 121 GHNPSNNGNQSLATAFIVTQNPT 143

[Close]

BLAST of CsaV3_3G044130 vs. NCBI nr
Match: KGN44003.1 (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 7.2e-22
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
          M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N  MEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 95
          N DNL QAGS VP  S ISQ ++ +D I  P+  V
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAV 95

[Close]

BLAST of CsaV3_3G044130 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
           + P+V +Q +GF   +D+W+   D FGV+SR EEDFL QTF TTRK N  MEDYLRIMKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 95
           N DNL QA SP+P R+ ISQ ++ +D +  P+ +V
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120

[Close]

BLAST of CsaV3_3G044130 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
           M P+V  Q MG+    DLW  IQ+LFGVQS+ EED+L Q F  TRK +  M D+LR+MK+
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 61  NTDNLSQAGSPVPPRSSISQ 81
           + DNL QAGSPVP RS ISQ
Sbjct: 113 HADNLGQAGSPVPTRSLISQ 132

[Close]

BLAST of CsaV3_3G044130 vs. NCBI nr
Match: KGN54432.1 (hypothetical protein Csa_4G329050 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 9.4e-14
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MVPDVTLQFMGFNTTRDLWKVI-QDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMK 60
          M  +V +Q M F   +DLW+ I QD  GVQSRVEE+FL QT  TTRKDN  MEDYL I K
Sbjct: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61 TNTDNLSQAGSPVPPRSSISQGVIIDRILIPINLV 95
           N DNLSQ  S VPP+       ++  +L+ +N V
Sbjct: 61 MNADNLSQTDSLVPPQ-------VLSYVLLELNEV 88

[Close]

BLAST of CsaV3_3G044130 vs. TrEMBL
Match: tr|A0A0A0LFV1|A0A0A0LFV1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850540 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.5e-73
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
           MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT
Sbjct: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 61  NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK 120
           NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK
Sbjct: 61  NTDNLSQAGSPVPPRSSISQGVIIDRILIPINLVEIDLIKIDSAVGTTSMAVGVVEEENK 120

Query: 121 GHNPSNNGNQSLATAFIVTQNPT 144
           GHNPSNNGNQSLATAFIVTQNPT
Sbjct: 121 GHNPSNNGNQSLATAFIVTQNPT 143

[Close]

BLAST of CsaV3_3G044130 vs. TrEMBL
Match: tr|A0A0A0K3F9|A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-22
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
          M P+V LQ MGFNT +DLW+ IQDLFGVQ R EEDFL  TF TT+K N  MEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 95
          N DNL QAGS VP  S ISQ ++ +D I  P+  V
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAV 95

[Close]

BLAST of CsaV3_3G044130 vs. TrEMBL
Match: tr|A0A0A0LXB7|A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-20
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60
           + P+V +Q +GF   +D+W+   D FGV+SR EEDFL QTF TTRK N  MEDYLRIMKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NTDNLSQAGSPVPPRSSISQGVI-IDRILIPINLV 95
           N DNL QA SP+P R+ ISQ ++ +D +  P+ +V
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVV 120

[Close]

BLAST of CsaV3_3G044130 vs. TrEMBL
Match: tr|A0A0A0L1H3|A0A0A0L1H3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329050 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-14
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MVPDVTLQFMGFNTTRDLWKVI-QDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMK 60
          M  +V +Q M F   +DLW+ I QD  GVQSRVEE+FL QT  TTRKDN  MEDYL I K
Sbjct: 1  MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 61 TNTDNLSQAGSPVPPRSSISQGVIIDRILIPINLV 95
           N DNLSQ  S VPP+       ++  +L+ +N V
Sbjct: 61 MNADNLSQTDSLVPPQ-------VLSYVLLELNEV 88

[Close]

BLAST of CsaV3_3G044130 vs. TrEMBL
Match: tr|A0A1S4DY80|A0A1S4DY80_CUCME (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRK 47
           M P+VT+Q MGF   +DLW+  QDLFG+QSR +EDFLHQTF TT+K
Sbjct: 198 MTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKK 243

The following BLAST results are available for this feature:

BLAST of CsaV3_3G044130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59849.1	5.3e-73	100.00	hypothetical protein Csa_3G850540 [Cucumis sativus]	[more]
KGN44003.1	7.2e-22	62.11	hypothetical protein Csa_7G091720 [Cucumis sativus]	[more]
KGN65684.1	4.0e-20	54.74	hypothetical protein Csa_1G496800 [Cucumis sativus]	[more]
XP_022148963.1	1.4e-17	58.75	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
KGN54432.1	9.4e-14	51.58	hypothetical protein Csa_4G329050 [Cucumis sativus]	[more]

BLAST of CsaV3_3G044130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G044130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G044130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFV1\|A0A0A0LFV1_CUCSA	3.5e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850540 PE=4 SV=1	[more]
tr\|A0A0A0K3F9\|A0A0A0K3F9_CUCSA	4.8e-22	62.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1	[more]
tr\|A0A0A0LXB7\|A0A0A0LXB7_CUCSA	2.6e-20	54.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
tr\|A0A0A0L1H3\|A0A0A0L1H3_CUCSA	6.2e-14	51.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329050 PE=4 SV=1	[more]
tr\|A0A1S4DY80\|A0A1S4DY80_CUCME	9.3e-10	65.22	uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G044130.1	CsaV3_3G044130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G044130	CSPI03G41700	Wild cucumber (PI 183967)	cpicucB145

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G044130	Cucumber (Chinese Long) v3	cuccucB155
CsaV3_3G044130	Silver-seed gourd	carcucB0134
CsaV3_3G044130	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G044130	Cucumber (Gy14) v2	cgybcucB327
CsaV3_3G044130	Cucumber (Gy14) v1	cgycucB546
CsaV3_3G044130	Cucumber (Gy14) v1	cgycucB523
CsaV3_3G044130	Cucurbita maxima (Rimu)	cmacucB0283
CsaV3_3G044130	Cucurbita maxima (Rimu)	cmacucB0426
CsaV3_3G044130	Cucurbita maxima (Rimu)	cmacucB0538
CsaV3_3G044130	Cucurbita maxima (Rimu)	cmacucB1056
CsaV3_3G044130	Cucurbita moschata (Rifu)	cmocucB0274
CsaV3_3G044130	Cucurbita moschata (Rifu)	cmocucB0421
CsaV3_3G044130	Cucurbita moschata (Rifu)	cmocucB0523
CsaV3_3G044130	Cucurbita moschata (Rifu)	cmocucB1038
CsaV3_3G044130	Cucurbita pepo (Zucchini)	cpecucB0155
CsaV3_3G044130	Cucurbita pepo (Zucchini)	cpecucB0380
CsaV3_3G044130	Cucurbita pepo (Zucchini)	cpecucB0695
CsaV3_3G044130	Cucurbita pepo (Zucchini)	cpecucB0751
CsaV3_3G044130	Wild cucumber (PI 183967)	cpicucB394
CsaV3_3G044130	Bottle gourd (USVL1VR-Ls)	cuclsiB190
CsaV3_3G044130	Bottle gourd (USVL1VR-Ls)	cuclsiB254
CsaV3_3G044130	Melon (DHL92) v3.5.1	cucmeB185
CsaV3_3G044130	Melon (DHL92) v3.5.1	cucmeB223
CsaV3_3G044130	Melon (DHL92) v3.6.1	cucmedB176
CsaV3_3G044130	Melon (DHL92) v3.6.1	cucmedB216
CsaV3_3G044130	Watermelon (Charleston Gray)	cucwcgB190
CsaV3_3G044130	Watermelon (Charleston Gray)	cucwcgB262
CsaV3_3G044130	Watermelon (97103) v1	cucwmB201
CsaV3_3G044130	Watermelon (97103) v1	cucwmB224
CsaV3_3G044130	Watermelon (97103) v2	cucwmbB242
CsaV3_3G044130	Watermelon (97103) v2	cucwmbB260
CsaV3_3G044130	Wax gourd	cucwgoB279
CsaV3_3G044130	Wax gourd	cucwgoB349