CsaV3_3G044100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G044100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 35976174 .. 35976482 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCCAAAGTTAAACCACAAGAAACCATTTCCAAATTTCCCCAGTTCAAAAAATCAAATGGGTTGTCTGGAAATGGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGGCAGAGGGAATTATTACCTCGTTTGTTGGCTGTAATAATTGGTTGATGCGCCGAATTGTTGGGTTGTGGTAAGAAAAGTTCAAAAAGAGATATCCTTCCGGTGGCTGAAATTTAGGGGTTTGAGGAGGAAGATGAAGGGAGAGGACAAGGAGGGAAAGTTGGTGAGAAAACCTAG

mRNA sequence

ATGCCTTCCAAAGTTAAACCACAAGAAACCATTTCCAAATTTCCCCAGTTCAAAAAATCAAATGGGTTGTCTGGAAATGGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGGCAGAGGGAATTATTACCTCGTTTGTTGGCTGGGTTTGAGGAGGAAGATGAAGGGAGAGGACAAGGAGGGAAAGTTGGTGAGAAAACCTAG

Coding sequence (CDS)

ATGCCTTCCAAAGTTAAACCACAAGAAACCATTTCCAAATTTCCCCAGTTCAAAAAATCAAATGGGTTGTCTGGAAATGGAAAGTTCTCATCAACACATCACATATATCATAGCAATAAGACAAAATCAGAGCGGCAGAGGGAATTATTACCTCGTTTGTTGGCTGGGTTTGAGGAGGAAGATGAAGGGAGAGGACAAGGAGGGAAAGTTGGTGAGAAAACCTAG

Protein sequence

MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEEDEGRGQGGKVGEKT
Homology
[Close]
BLAST of CsaV3_3G044100 vs. NCBI nr
Match: KGN59846.1 (hypothetical protein Csa_3G850510 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.7e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60
          MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DEGRGQGGKVGEKT 75
          DEGRGQGGKVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

[Close]
BLAST of CsaV3_3G044100 vs. TrEMBL
Match: tr|A0A0A0LIH6|A0A0A0LIH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60
          MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE
Sbjct: 1  MPSKVKPQETISKFPQFKKSNGLSGNGKFSSTHHIYHSNKTKSERQRELLPRLLAGFEEE 60

Query: 61 DEGRGQGGKVGEKT 75
          DEGRGQGGKVGEKT
Sbjct: 61 DEGRGQGGKVGEKT 74

The following BLAST results are available for this feature:
BLAST of CsaV3_3G044100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59846.14.7e-33100.00hypothetical protein Csa_3G850510 [Cucumis sativus][more]
BLAST of CsaV3_3G044100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G044100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G044100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIH6|A0A0A0LIH6_CUCSA3.1e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G850510 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G044100.1CsaV3_3G044100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G044100CSPI03G41660Wild cucumber (PI 183967)cpicucB145
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G044100Cucumber (Chinese Long) v3cuccucB155
CsaV3_3G044100Silver-seed gourdcarcucB0134
CsaV3_3G044100Silver-seed gourdcarcucB0226
CsaV3_3G044100Silver-seed gourdcarcucB1071
CsaV3_3G044100Cucumber (Gy14) v2cgybcucB117
CsaV3_3G044100Cucumber (Gy14) v2cgybcucB327
CsaV3_3G044100Cucumber (Gy14) v1cgycucB546
CsaV3_3G044100Cucumber (Gy14) v1cgycucB523
CsaV3_3G044100Cucurbita maxima (Rimu)cmacucB0283
CsaV3_3G044100Cucurbita maxima (Rimu)cmacucB0426
CsaV3_3G044100Cucurbita maxima (Rimu)cmacucB0538
CsaV3_3G044100Cucurbita maxima (Rimu)cmacucB1056
CsaV3_3G044100Cucurbita moschata (Rifu)cmocucB0274
CsaV3_3G044100Cucurbita moschata (Rifu)cmocucB0421
CsaV3_3G044100Cucurbita moschata (Rifu)cmocucB0523
CsaV3_3G044100Cucurbita moschata (Rifu)cmocucB1038
CsaV3_3G044100Cucurbita pepo (Zucchini)cpecucB0155
CsaV3_3G044100Cucurbita pepo (Zucchini)cpecucB0380
CsaV3_3G044100Cucurbita pepo (Zucchini)cpecucB0695
CsaV3_3G044100Cucurbita pepo (Zucchini)cpecucB0751
CsaV3_3G044100Wild cucumber (PI 183967)cpicucB394
CsaV3_3G044100Bottle gourd (USVL1VR-Ls)cuclsiB190
CsaV3_3G044100Bottle gourd (USVL1VR-Ls)cuclsiB254
CsaV3_3G044100Melon (DHL92) v3.5.1cucmeB185
CsaV3_3G044100Melon (DHL92) v3.5.1cucmeB223
CsaV3_3G044100Melon (DHL92) v3.6.1cucmedB176
CsaV3_3G044100Melon (DHL92) v3.6.1cucmedB216
CsaV3_3G044100Watermelon (Charleston Gray)cucwcgB190
CsaV3_3G044100Watermelon (Charleston Gray)cucwcgB262
CsaV3_3G044100Watermelon (97103) v1cucwmB201
CsaV3_3G044100Watermelon (97103) v1cucwmB224
CsaV3_3G044100Watermelon (97103) v2cucwmbB242
CsaV3_3G044100Watermelon (97103) v2cucwmbB260
CsaV3_3G044100Wax gourdcucwgoB279
CsaV3_3G044100Wax gourdcucwgoB349