CsaV3_3G043860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3 : 35738111 .. 35738487 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTGTGCTTCTTCTTATCAGCGATTCAAATCAGTTTCCTTTTGTTTTCCTCCATTATCAATCAATTTCCACTCCCAATTTTCCTCAATCACTTATGATGAAGACCTTCCCGATTTCTTCGATCATCTTCTTCGGCAATGCAACGGCATTCAGCATAGCAAACAAGTTCATTCCGCCACCGTTGTCACCGGTGCCTATTGTTCAGCGTTCGTCTCCGCCCGGCTTGTGTCCATCTATTCCCGTTATGGGCTTGTTTCTGATGCCCGAAAAGTGTTTGGTTCTGCGCCATTTGAATGTTATTCCAACTTCTTGTTATGGAATTCGATTATAAGAGCCAATGTATATCATGGGTATTGCATAGAAGCGCTTCAACT

mRNA sequence

ATGCTCTGTGCTTCTTCTTATCAGCGATTCAAATCAGTTTCCTTTTGTTTTCCTCCATTATCAATCAATTTCCACTCCCAATTTTCCTCAATCACTTATGATGAAGACCTTCCCGATTTCTTCGATCATCTTCTTCGGCAATGCAACGGCATTCAGCATAGCAAACAAGTTCATTCCGCCACCGTTGTCACCGGTGCCTATTGTTCAGCGTTCGTCTCCGCCCGGCTTGTGTCCATCTATTCCCGTTATGGGCTTGTTTCTGATGCCCGAAAAGTGTTTGGTTCTGCGCCATTTGAATGTTATTCCAACTTCTTGTTATGGAATTCGATTATAAGAGCCAATGTATATCATGGGTATTGCATAGAAGCGCTTCAACT

Coding sequence (CDS)

ATGCTCTGTGCTTCTTCTTATCAGCGATTCAAATCAGTTTCCTTTTGTTTTCCTCCATTATCAATCAATTTCCACTCCCAATTTTCCTCAATCACTTATGATGAAGACCTTCCCGATTTCTTCGATCATCTTCTTCGGCAATGCAACGGCATTCAGCATAGCAAACAAGTTCATTCCGCCACCGTTGTCACCGGTGCCTATTGTTCAGCGTTCGTCTCCGCCCGGCTTGTGTCCATCTATTCCCGTTATGGGCTTGTTTCTGATGCCCGAAAAGTGTTTGGTTCTGCGCCATTTGAATGTTATTCCAACTTCTTGTTATGGAATTCGATTATAAGAGCCAATGTATATCATGGGTATTGCATAGAAGCGCTTCAACT

Protein sequence

MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQX
Homology
[Close]
BLAST of CsaV3_3G043860 vs. NCBI nr
Match: XP_004146851.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis sativus] >KGN59819.1 hypothetical protein Csa_3G848280 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60
           MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA
Sbjct: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60

Query: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120
           TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC
Sbjct: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120

Query: 121 IEALQ 126
           IEALQ
Sbjct: 121 IEALQ 125

[Close]
BLAST of CsaV3_3G043860 vs. NCBI nr
Match: XP_008447611.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.9e-63
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60
           MLCA SYQRFKSVSFCFPPLSINFHSQFSSITYDEDLP+FFDHLLRQCNGIQHSKQVHSA
Sbjct: 1   MLCAYSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPEFFDHLLRQCNGIQHSKQVHSA 60

Query: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120
           TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFEC SNFLLWNSIIRANVYHGYC
Sbjct: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECLSNFLLWNSIIRANVYHGYC 120

Query: 121 IEAL 125
           IEAL
Sbjct: 121 IEAL 124

[Close]
BLAST of CsaV3_3G043860 vs. NCBI nr
Match: XP_022148095.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 97/133 (72.93%), Postives = 102/133 (76.69%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSIN--------FHSQFSSITYDEDLPDFFDHLLRQCNGIQ 60
           ML ASSYQRFKS SFCFP  SIN        F S   SITYDE L D FDHLLRQC+G Q
Sbjct: 1   MLYASSYQRFKSASFCFPQSSINFPFHFRFYFKSHLFSITYDE-LLDSFDHLLRQCSGTQ 60

Query: 61  HSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIR 120
           H KQVHSATVVTGA CSAFV+ARLVS+Y+R GLV DARKVF +APFE  SN LLWNSIIR
Sbjct: 61  HCKQVHSATVVTGACCSAFVAARLVSVYARSGLVFDARKVFDTAPFEGLSNLLLWNSIIR 120

Query: 121 ANVYHGYCIEALQ 126
           ANV HGYC E LQ
Sbjct: 121 ANVSHGYCGEVLQ 132

[Close]
BLAST of CsaV3_3G043860 vs. NCBI nr
Match: XP_023523771.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 92/133 (69.17%), Postives = 101/133 (75.94%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSIN--------FHSQFSSITYDEDLPDFFDHLLRQCNGIQ 60
           ML ASSYQRF S SFCFP  +IN        F+S FSSITYD++L D FD LLRQCNGI+
Sbjct: 1   MLYASSYQRFNSASFCFPRFTINFPSHFRYYFNSLFSSITYDDELLDSFDRLLRQCNGIR 60

Query: 61  HSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIR 120
           H KQVHSATVVTGA  SAFV+ARLVS+Y+R G V DARKVF + PFE  SN LLWNSIIR
Sbjct: 61  HCKQVHSATVVTGACSSAFVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIR 120

Query: 121 ANVYHGYCIEALQ 126
           ANV  GY  EALQ
Sbjct: 121 ANV-DGYSREALQ 132

[Close]
BLAST of CsaV3_3G043860 vs. NCBI nr
Match: XP_022997825.1 (putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 87/133 (65.41%), Postives = 95/133 (71.43%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSINF--------HSQFSSITYDEDLPDFFDHLLRQCNGIQ 60
           ML ASSYQRF S SFCFP  +INF              ITYD++L D FD LLRQCNGI+
Sbjct: 1   MLYASSYQRFNSASFCFPRFTINFPXXXXXXXXXXXXXITYDDELLDSFDRLLRQCNGIR 60

Query: 61  HSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIR 120
           H KQVHS TVV GA  SAFV+ARLVS+Y+R G V DARKVF + PFE  SN LLWNSIIR
Sbjct: 61  HCKQVHSTTVVIGACSSAFVAARLVSVYARSGFVFDARKVFDTVPFEGLSNLLLWNSIIR 120

Query: 121 ANVYHGYCIEALQ 126
           ANV  GYC EALQ
Sbjct: 121 ANV-DGYCREALQ 132

[Close]
BLAST of CsaV3_3G043860 vs. TAIR10
Match: AT1G17630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 14  SFCF-----PPLSINFHSQFSSITY-------DEDLPDFFDHLLRQCNGIQHSKQVHSAT 73
           +FCF     P  SI+     S  +Y       D+ L  +FDHLL  C   Q  +QVH+  
Sbjct: 20  NFCFLTSQCPYTSISSPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQV 79

Query: 74  VVTG-AYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 126
           +++   + S  ++A L+S+Y+R GL+ DAR VF +      S+  LWNSI++ANV HG  
Sbjct: 80  LLSDFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLY 139

[Close]
BLAST of CsaV3_3G043860 vs. TAIR10
Match: AT1G31790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.1e-07
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 41  FDHLLRQC----NGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSA 100
           F ++L+ C    +G +  +QVH+  +  G      +  RL+ +Y +YG V DA KVF S+
Sbjct: 299 FSNVLKACSWVSDGGRSGQQVHANAIKLGFESDCLIRCRLIEMYGKYGKVKDAEKVFKSS 358

Query: 101 PFECYSNFLLWNSIIRANVYHGYCIEALQ 126
             E  ++   WN+++ + + +G  IEA++
Sbjct: 359 KDE--TSVSCWNAMVASYMQNGIYIEAIK 385

[Close]
BLAST of CsaV3_3G043860 vs. TAIR10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.9e-06
Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 51  IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSI 110
           + H KQ+H + V +G   S  VS  L+++Y++ G ++ A + F      C  + + W S+
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDL--IRCERDTVSWTSM 488

Query: 111 IRANVYHGYCIEALQ 126
           I A   HG+  EAL+
Sbjct: 489 IIALAQHGHAEEALE 501

[Close]
BLAST of CsaV3_3G043860 vs. TAIR10
Match: AT5G50390.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 33/97 (34.02%), Postives = 45/97 (46.39%), Query Frame = 0 

Query: 35  EDLPDFFDH----LLRQCNG---IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVS 94
           E+L D   H    +LR   G   I   KQ+H   +  G   + FVS  L+ +YS+ G + 
Sbjct: 217 EELSDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIE 276

Query: 95  DARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEAL 125
           DAR  F   P       + WN++I     HGY  EAL
Sbjct: 277 DARCAFECMP---EKTTVAWNNVIAGYALHGYSEEAL 310

[Close]
BLAST of CsaV3_3G043860 vs. TAIR10
Match: AT2G03380.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 34/117 (29.06%), Postives = 49/117 (41.88%), Query Frame = 0 

Query: 15  FCFPPLSINF----------HSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSATVVT 74
           F FPP  ++F           +  SS+ Y    P F   LL +C  I   +Q H      
Sbjct: 13  FGFPPRCVSFTTIKELILTEENDGSSLHYAASSPCFL--LLSKCTNIDSLRQSHGVLTGN 72

Query: 75  GAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCI 122
           G      ++ +LVS+Y  +G   DAR VF   P     +F LW  ++R      YC+
Sbjct: 73  GLMGDISIATKLVSLYGFFGYTKDARLVFDQIP---EPDFYLWKVMLRC-----YCL 119

[Close]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match: sp|Q9LNP2|PPR47_ARATH (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E72 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-12
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 0 

Query: 14  SFCF-----PPLSINFHSQFSSITY-------DEDLPDFFDHLLRQCNGIQHSKQVHSAT 73
           +FCF     P  SI+     S  +Y       D+ L  +FDHLL  C   Q  +QVH+  
Sbjct: 20  NFCFLTSQCPYTSISSPDTVSVSSYYSLTSNNDQSLFHYFDHLLGLCLTAQQCRQVHAQV 79

Query: 74  VVTG-AYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 126
           +++   + S  ++A L+S+Y+R GL+ DAR VF +      S+  LWNSI++ANV HG  
Sbjct: 80  LLSDFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLY 139

[Close]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match: sp|Q9C6R9|PPR66_ARATH (Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-06
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 41  FDHLLRQC----NGIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSA 100
           F ++L+ C    +G +  +QVH+  +  G      +  RL+ +Y +YG V DA KVF S+
Sbjct: 299 FSNVLKACSWVSDGGRSGQQVHANAIKLGFESDCLIRCRLIEMYGKYGKVKDAEKVFKSS 358

Query: 101 PFECYSNFLLWNSIIRANVYHGYCIEALQ 126
             E  ++   WN+++ + + +G  IEA++
Sbjct: 359 KDE--TSVSCWNAMVASYMQNGIYIEAIK 385

[Close]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match: sp|Q9SHZ8|PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 24/75 (32.00%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 51  IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSI 110
           + H KQ+H + V +G   S  VS  L+++Y++ G ++ A + F      C  + + W S+
Sbjct: 429 LSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDL--IRCERDTVSWTSM 488

Query: 111 IRANVYHGYCIEALQ 126
           I A   HG+  EAL+
Sbjct: 489 IIALAQHGHAEEALE 501

[Close]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match: sp|Q9FK33|PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 33/97 (34.02%), Postives = 45/97 (46.39%), Query Frame = 0 

Query: 35  EDLPDFFDH----LLRQCNG---IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVS 94
           E+L D   H    +LR   G   I   KQ+H   +  G   + FVS  L+ +YS+ G + 
Sbjct: 217 EELSDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIE 276

Query: 95  DARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEAL 125
           DAR  F   P       + WN++I     HGY  EAL
Sbjct: 277 DARCAFECMP---EKTTVAWNNVIAGYALHGYSEEAL 310

[Close]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match: sp|Q9ZQ74|PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E47 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 34/117 (29.06%), Postives = 49/117 (41.88%), Query Frame = 0 

Query: 15  FCFPPLSINF----------HSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSATVVT 74
           F FPP  ++F           +  SS+ Y    P F   LL +C  I   +Q H      
Sbjct: 13  FGFPPRCVSFTTIKELILTEENDGSSLHYAASSPCFL--LLSKCTNIDSLRQSHGVLTGN 72

Query: 75  GAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCI 122
           G      ++ +LVS+Y  +G   DAR VF   P     +F LW  ++R      YC+
Sbjct: 73  GLMGDISIATKLVSLYGFFGYTKDARLVFDQIP---EPDFYLWKVMLRC-----YCL 119

[Close]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match: tr|A0A0A0LFT1|A0A0A0LFT1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60
           MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA
Sbjct: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60

Query: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120
           TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC
Sbjct: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120

Query: 121 IEALQ 126
           IEALQ
Sbjct: 121 IEALQ 125

[Close]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match: tr|A0A1S3BIG8|A0A1S3BIG8_CUCME (putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucumis melo OX=3656 GN=LOC103490025 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPDFFDHLLRQCNGIQHSKQVHSA 60
           MLCA SYQRFKSVSFCFPPLSINFHSQFSSITYDEDLP+FFDHLLRQCNGIQHSKQVHSA
Sbjct: 1   MLCAYSYQRFKSVSFCFPPLSINFHSQFSSITYDEDLPEFFDHLLRQCNGIQHSKQVHSA 60

Query: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYC 120
           TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFEC SNFLLWNSIIRANVYHGYC
Sbjct: 61  TVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECLSNFLLWNSIIRANVYHGYC 120

Query: 121 IEAL 125
           IEAL
Sbjct: 121 IEAL 124

[Close]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match: tr|A0A2P4K945|A0A2P4K945_QUESU (Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_02263 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0 

Query: 5   SSYQRFKSVSFCFPPLSINF---------------HSQFSSITYDEDLPDFFDHLLRQCN 64
           +S QRF S+S  F    ++F               H+Q S +T+ ++L  FFDHLLRQC 
Sbjct: 4   ASCQRFISISSRFYKTHLSFPHDLSRSILTHTHNTHTQ-SFVTHHDELLKFFDHLLRQCT 63

Query: 65  GIQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNS 124
            +QH K+VH+  VVTG   SAF++ARLVS+Y R+GLV DARKVF   P E  SN LLWNS
Sbjct: 64  TVQHCKRVHTQVVVTGTNRSAFLAARLVSVYGRFGLVIDARKVFDEIPVEGLSNLLLWNS 123

Query: 125 IIRANVYHGYCIEALQ 126
           I+RA+V +GY +E L+
Sbjct: 124 ILRASVSNGYYVEGLK 138

[Close]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match: tr|K4C6Z2|K4C6Z2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-24
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 3   CASSYQRF-------KSVSFCFPPLSINFHSQFS---SITYDEDLPDFFDHLLRQCN-GI 62
           C SS +RF        S   CFP +  +FH   S   S     +L DF DHLL+QC   +
Sbjct: 5   CRSSSRRFISQTPFSISTRLCFPSIFTHFHCHSSANHSHKTQSELLDFLDHLLQQCGLNL 64

Query: 63  QHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSII 122
           Q  KQ+H   ++TG+  S+F++ARL+S+YS++GLV++A+KVF + P +C+SN LLWNSI+
Sbjct: 65  QQLKQIHENIIITGSSNSSFIAARLISVYSKFGLVNEAQKVFETCPTDCFSNLLLWNSIL 124

Query: 123 RANVYHGYCIEALQ 126
           RANV HG C EA++
Sbjct: 125 RANVSHGKCEEAVK 138

[Close]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match: tr|A0A2C9W3T3|A0A2C9W3T3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G140000 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 62/135 (45.93%), Postives = 89/135 (65.93%), Query Frame = 0 

Query: 1   MLCASSYQRFKSVS---FCFPP-----LSINFHSQFSSITY--DEDLPDFFDHLLRQCNG 60
           M  A+++QR  S+      FPP     +S+  H Q  S  Y    +L DF DHLL+QC G
Sbjct: 1   MFHAAAFQRLASIPSRIHNFPPNPSSTISLLLHHQTQSKEYQPSNELLDFVDHLLQQCTG 60

Query: 61  IQHSKQVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSI 120
           +   KQ+H+  ++TG+ CSAF++AR++ +Y+R+GL+ +A+KVF SAPFE  SN LLWNSI
Sbjct: 61  VDRCKQIHTHVIITGSCCSAFLAARIIFVYARFGLLFEAQKVFNSAPFEGVSNLLLWNSI 120

Query: 121 IRANVYHGYCIEALQ 126
           +RANV + Y   AL+
Sbjct: 121 LRANVSNEYYENALK 135

The following BLAST results are available for this feature:
BLAST of CsaV3_3G043860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146851.13.2e-66100.00PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucum... [more]
XP_008447611.11.9e-6397.58PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Cucum... [more]
XP_022148095.11.6e-4172.93putative pentatricopeptide repeat-containing protein At1g17630 [Momordica charan... [more]
XP_023523771.12.8e-3869.17putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita pepo s... [more]
XP_022997825.11.3e-3565.41putative pentatricopeptide repeat-containing protein At1g17630 [Cucurbita maxima... [more]
BLAST of CsaV3_3G043860 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G17630.11.7e-1336.80Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G31790.14.1e-0730.34Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G22070.15.9e-0632.00pentatricopeptide (PPR) repeat-containing protein[more]
AT5G50390.11.0e-0534.02Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G03380.11.7e-0529.06Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CsaV3_3G043860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LNP2|PPR47_ARATH3.1e-1236.80Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis th... [more]
sp|Q9C6R9|PPR66_ARATH7.4e-0630.34Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana OX... [more]
sp|Q9SHZ8|PP168_ARATH1.1e-0432.00Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
sp|Q9FK33|PP427_ARATH1.8e-0434.02Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidop... [more]
sp|Q9ZQ74|PP146_ARATH3.1e-0429.06Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_3G043860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFT1|A0A0A0LFT1_CUCSA2.1e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848280 PE=4 SV=1[more]
tr|A0A1S3BIG8|A0A1S3BIG8_CUCME1.3e-6397.58putative pentatricopeptide repeat-containing protein At1g17630 OS=Cucumis melo O... [more]
tr|A0A2P4K945|A0A2P4K945_QUESU2.0e-2449.26Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 G... [more]
tr|K4C6Z2|K4C6Z2_SOLLC2.6e-2446.27Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
tr|A0A2C9W3T3|A0A2C9W3T3_MANES1.7e-2345.93Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G140000 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0031930 mitochondria-nucleus signaling pathway
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G043860.1CsaV3_3G043860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015:SF1596SUBFAMILY NOT NAMEDcoord: 32..118
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 32..118

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G043860Cp4.1LG02g14250Cucurbita pepo (Zucchini)cpecucB0695
CsaV3_3G043860CsGy3G038860Cucumber (Gy14) v2cgybcucB117
CsaV3_3G043860Carg04309Silver-seed gourdcarcucB0226
CsaV3_3G043860Cla97C07G140570Watermelon (97103) v2cucwmbB242
CsaV3_3G043860Bhi01G002122Wax gourdcucwgoB293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G043860Cucumber (Chinese Long) v3cuccucB155
CsaV3_3G043860Silver-seed gourdcarcucB0134
CsaV3_3G043860Silver-seed gourdcarcucB1071
CsaV3_3G043860Cucumber (Gy14) v2cgybcucB327
CsaV3_3G043860Cucumber (Gy14) v1cgycucB546
CsaV3_3G043860Cucumber (Gy14) v1cgycucB523
CsaV3_3G043860Cucurbita maxima (Rimu)cmacucB0283
CsaV3_3G043860Cucurbita maxima (Rimu)cmacucB0426
CsaV3_3G043860Cucurbita maxima (Rimu)cmacucB0538
CsaV3_3G043860Cucurbita maxima (Rimu)cmacucB1056
CsaV3_3G043860Cucurbita moschata (Rifu)cmocucB0274
CsaV3_3G043860Cucurbita moschata (Rifu)cmocucB0421
CsaV3_3G043860Cucurbita moschata (Rifu)cmocucB0523
CsaV3_3G043860Cucurbita moschata (Rifu)cmocucB1038
CsaV3_3G043860Cucurbita pepo (Zucchini)cpecucB0155
CsaV3_3G043860Cucurbita pepo (Zucchini)cpecucB0380
CsaV3_3G043860Cucurbita pepo (Zucchini)cpecucB0751
CsaV3_3G043860Wild cucumber (PI 183967)cpicucB145
CsaV3_3G043860Wild cucumber (PI 183967)cpicucB394
CsaV3_3G043860Bottle gourd (USVL1VR-Ls)cuclsiB190
CsaV3_3G043860Bottle gourd (USVL1VR-Ls)cuclsiB254
CsaV3_3G043860Melon (DHL92) v3.5.1cucmeB185
CsaV3_3G043860Melon (DHL92) v3.5.1cucmeB223
CsaV3_3G043860Melon (DHL92) v3.6.1cucmedB176
CsaV3_3G043860Melon (DHL92) v3.6.1cucmedB216
CsaV3_3G043860Watermelon (Charleston Gray)cucwcgB190
CsaV3_3G043860Watermelon (Charleston Gray)cucwcgB262
CsaV3_3G043860Watermelon (97103) v1cucwmB201
CsaV3_3G043860Watermelon (97103) v1cucwmB224
CsaV3_3G043860Watermelon (97103) v2cucwmbB260
CsaV3_3G043860Wax gourdcucwgoB349