CsaV3_3G041220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G041220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 33655841 .. 33656173 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTGAACAGTATAACTACAGATTGCTTTGTGTGCATAATATGGATAGCAAGTCTCTACACATTTCACATTTTCACAGGGGCTGGTGTGTGTGCACGTATCACTAAATATGGTACTAAGGCCATTTTGAAGTCATACAACCTCAATGGAAGCGAATTGAGGCAAAATGAAGCAAAAACTGAAGGTTTGGTAATTGAAGCCTCGACCGCGCTGAAAGGCATAGAGCTCCAATTTTGCATAAATGGCCAAGCGCAATGGCGCTTAGACATTTTTATAAAGCATCTTTTGGTTCGTAATGAAAAGATTCTTCATCATCGGGCACGTGGATGA

mRNA sequence

ATGTGTGTGAACAGTATAACTACAGATTGCTTTGTGTGCATAATATGGATAGCAAGTCTCTACACATTTCACATTTTCACAGGGGCTGGTGTGTGTGCACGTATCACTAAATATGGTACTAAGGCCATTTTGAAGTCATACAACCTCAATGGAAGCGAATTGAGGCAAAATGAAGCAAAAACTGAAGGTTTGGTAATTGAAGCCTCGACCGCGCTGAAAGGCATAGAGCTCCAATTTTGCATAAATGGCCAAGCGCAATGGCGCTTAGACATTTTTATAAAGCATCTTTTGGTTCGTAATGAAAAGATTCTTCATCATCGGGCACGTGGATGA

Coding sequence (CDS)

ATGTGTGTGAACAGTATAACTACAGATTGCTTTGTGTGCATAATATGGATAGCAAGTCTCTACACATTTCACATTTTCACAGGGGCTGGTGTGTGTGCACGTATCACTAAATATGGTACTAAGGCCATTTTGAAGTCATACAACCTCAATGGAAGCGAATTGAGGCAAAATGAAGCAAAAACTGAAGGTTTGGTAATTGAAGCCTCGACCGCGCTGAAAGGCATAGAGCTCCAATTTTGCATAAATGGCCAAGCGCAATGGCGCTTAGACATTTTTATAAAGCATCTTTTGGTTCGTAATGAAAAGATTCTTCATCATCGGGCACGTGGATGA

Protein sequence

MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAKTEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG
Homology
[Close]
BLAST of CsaV3_3G041220 vs. NCBI nr
Match: KGN59548.1 (hypothetical protein Csa_3G824930 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 7.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK 60
           MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK
Sbjct: 1   MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK 60

Query: 61  TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG 111
           TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG
Sbjct: 61  TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG 110

[Close]
BLAST of CsaV3_3G041220 vs. TrEMBL
Match: tr|A0A0A0LCR4|A0A0A0LCR4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824930 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.1e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK 60
           MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK
Sbjct: 1   MCVNSITTDCFVCIIWIASLYTFHIFTGAGVCARITKYGTKAILKSYNLNGSELRQNEAK 60

Query: 61  TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG 111
           TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG
Sbjct: 61  TEGLVIEASTALKGIELQFCINGQAQWRLDIFIKHLLVRNEKILHHRARG 110

The following BLAST results are available for this feature:
BLAST of CsaV3_3G041220 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59548.17.7e-56100.00hypothetical protein Csa_3G824930 [Cucumis sativus][more]
BLAST of CsaV3_3G041220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G041220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G041220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCR4|A0A0A0LCR4_CUCSA5.1e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G041220.1CsaV3_3G041220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G041220CsGy3G036350Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G041220Cucumber (Chinese Long) v3cuccucB126
CsaV3_3G041220Silver-seed gourdcarcucB0291
CsaV3_3G041220Silver-seed gourdcarcucB0468
CsaV3_3G041220Cucumber (Gy14) v2cgybcucB218
CsaV3_3G041220Cucumber (Gy14) v1cgycucB242
CsaV3_3G041220Cucumber (Gy14) v1cgycucB523
CsaV3_3G041220Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G041220Cucurbita maxima (Rimu)cmacucB0333
CsaV3_3G041220Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G041220Cucurbita moschata (Rifu)cmocucB0826
CsaV3_3G041220Cucurbita pepo (Zucchini)cpecucB0202
CsaV3_3G041220Cucurbita pepo (Zucchini)cpecucB0495
CsaV3_3G041220Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G041220Wild cucumber (PI 183967)cpicucB145
CsaV3_3G041220Wild cucumber (PI 183967)cpicucB270
CsaV3_3G041220Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G041220Melon (DHL92) v3.5.1cucmeB167
CsaV3_3G041220Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G041220Melon (DHL92) v3.6.1cucmedB157
CsaV3_3G041220Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G041220Watermelon (Charleston Gray)cucwcgB183
CsaV3_3G041220Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G041220Watermelon (97103) v1cucwmB208
CsaV3_3G041220Watermelon (97103) v2cucwmbB187
CsaV3_3G041220Watermelon (97103) v2cucwmbB256
CsaV3_3G041220Wax gourdcucwgoB225
CsaV3_3G041220Wax gourdcucwgoB270