CsaV3_3G040890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G040890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA-binding, CRM domain containing protein
Locationchr3 : 33502861 .. 33505587 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGGTACTATTCATTCAAGCTTCTTCCATCTTCTTTACTTGAATATCGATGTGTTTTTATTTTGAAGAGCAATTTCCAACCCCCTTTACTTCAATTTTGCACATTACTGATAAATTTCTTTGTTGTTCTGTTTCCTCTCGTTTTTTATGCGTTTATAATTTAACCTGGCCTAGCAGGTTCTAGATTGGAAGATAAAAACTTGTGTTTGATTTTGAAGGAAATAGTTTAGAATCTACAATATGGATTTATTAAATTTTGCTGAGTTTTCTGGTTGAATTCTAATTTGTTTCCATCATATATTTTTCTTGCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGTCAAGGGGAAGAAGAAACAGAAATTTCCAAATGCAGCAGAGAGAATCAAGAACAAGCTGGAAAACGTAAGCAAAAAAGAAATGTTTCAGAAATGTTACATGGGTCTATAATGTTAAGGTCTAGTTTATTCAATGTATTTGGGGAAAGTTCGCTCACTTCAAAAGAAAAGATTTTTCTTTTTTTTTTTTTGGGATTAGAGGAGATAGTTTTCAACTTCATCGATGTTGGCAATTTTTCATATGTTATTCAGTTACAGTTGCACATATTTTGTTGCAGGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGTTAGTCTTTAAATTTTCAGTTTTCCTAATGTATTCAGTGAATTTTTGTAAAGTACTTGTCTTTAAATTGGAAATCCGAGTGTTTGGACCAGTGCATCTTTATTTTAGACATTAAAGTGAAGGAGAATGTACAGTAGGATTATTTAGCTTTTTGAGTGTAAAATATGCACATGGGAGTGAGCCGTGTAATTAAGTAACAGTATTGAAGTTAGAGAAGTGTGCAGTTCACCTAAGCAAATATTTTGGGTTTTTGGATTGTTGGAGTGTCAAACACTGGGGAGGGAGAGTACAAGCCTCTTGGAGACTTGGAGAGTTTGTAATTCTTTTCTTCAGTAATGATCCAGATCCAGCGGTTTCATAGATAACAAGTCCAAAATCACAACTGTGCTTTTGTTCTATGTTCTCTGTCCTATCAGAATTTTGTGGTGTAAATGGTTCTATAGCGGCTCTTCTCTGAGCTTTCTTGGGGAAAAAAGAATCAAACAAACAGAGAGGGAAGTTTAGGATTTTGCATCTTGTGAAATTTGATAGAGAGCATTACTGTACAATGATATTGCTAACATTTAACAATAACAGGCAATTCCTATCATGCTGTCAGGTGTGTAGATACCTTGAAGAATAATGCAGTATTCCATTTTCACGTTAAGTCATTTAGTTAGCTTGATTAGAAAACAACGTACTGAAATTAGGCCGTTGTATAGGAAAGCCTTCATTTAACAGCAAATACCCAAATGTTGCGAACTTGGTCTGGTCTCCCGTTATGTTATCGTATTGTTTGCCTTTTGTTATCCTACCTTTGTAGCAATGGACATGTTTAAAACGTCGATGTGAATGTTAAGTGGATTTTTTTTCTTTTTCTTTTTTCGGAAATTGAATATGAATATATCATGTGAACGCCTTCCATCCTTGCAGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAA

mRNA sequence

ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGTCAAGGGGAAGAAGAAACAGAAATTTCCAAATGCAGCAGAGAGAATCAAGAACAAGCTGGAAAACGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAA

Coding sequence (CDS)

ATGGCCAAATCTTTGTTTCATAATCTTCGCAGAGCTCCTCTGCTTTTCAGATCATCATCTCTGAACCAACTGTCTTTCAGACCTATTCTTGAGATCCCTGACACTGTTTTCTCCCAAATCAAAAAATTTCCTGAAGCCAACATCTCAAAACCTTTGTTGGGATTTAGAAATCTGAGCCATGGTTCTGTGAATCTTGTCGTATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTAGATCCTCCAAAAAAAGAGAAGTGGAAAACTAAAAAAAAGTTGAAGATGCAGCGAATGAGATTAAAGCAGAAAAGAAAAGCAGCAAATAAGAGAGACCCTCGTCAACTGCGTGTCAAGGGGAAGAAGAAACAGAAATTTCCAAATGCAGCAGAGAGAATCAAGAACAAGCTGGAAAACGCCAGGATTAAGGAAGCATTGCTGATTGAGAGGTTAAGGCGGTATGAAGTTCCTAAAGTTCAGGGTCCTATGGTGAAACCACACGATCTGACTGGTGAGGAACGATTTTATATAAAGAAAATGGGTCAAAAGAGATCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTCTAAACATGCACATGCATTGGAAGAAACACGAAACTGTTAAAGTTTATTGCAAGCCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATCGGTGATGATACTATTATCTTCTATCGAGGGAAGGACTATGTGCAACCAGAAGTTATGTCACCAATTGATACATTATCTAAAAAACGGGCACTGGAAAAGTCCAAATACGAGCAATCCCTCGAGTCTGTACGCCGCTTCATTGCCATTGCTGAGAAGGAACTGGAGCTATATTACAGGCATATTGCACTTTACGGTGATCCAAATGATAGGAACCCATTGTCCATCTTAAACGTTCCATCTGACAACTTGAACTCAGACAAATATCAAATTACTAATATGGAAGACTCTCATTCTGCTGCTCTTTGCCTAGCATCTGATGTTATGAATCAAAGAAATCCCGATTTCTCGGATGACGAATCATTAGATATTGGAGATGGATTTGCAGATGCTTGCTTTTCTACAAGTGAATCAGATTTTGAAAGTGACAAATTAGATGAGTCTGGTGAAGGGAGAATGGAAGTTAGTGTTTCCCAGACGGAAGAGATTTCCTCAACCACAATGAACACATGTTCAGCTTTCCCGAACAAGTGTGAATTTCATAAGCAAGAACTACCGATACACTCATAA

Protein sequence

MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSHGSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIHS
Homology
[Close]
BLAST of CsaV3_3G040890 vs. NCBI nr
Match: XP_004136676.1 (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucumis sativus])

HSP 1 Score: 779.6 bits (2012), Expect = 5.4e-222
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
           XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG
Sbjct: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360

Query: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 420
           DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC
Sbjct: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 420

Query: 421 EFHKQELPIHS 432
           EFHKQELPIHS
Sbjct: 421 EFHKQELPIHS 431

[Close]
BLAST of CsaV3_3G040890 vs. NCBI nr
Match: KGN59514.1 (hypothetical protein Csa_3G823620 [Cucumis sativus])

HSP 1 Score: 740.3 bits (1910), Expect = 3.6e-210
Identity = 402/431 (93.27%), Postives = 403/431 (93.50%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLVVSQGKPKFETHEVDPPKK XXXXXXXXXXXXXXXXXXXXX NKRD         
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKXXXXXXXXXXXXXXXXXXXXXXANKRDP-------- 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
                         +   ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG
Sbjct: 121 --------------RQLRARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360

Query: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 420
           DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC
Sbjct: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 409

Query: 421 EFHKQELPIHS 432
           EFHKQELPIHS
Sbjct: 421 EFHKQELPIHS 409

[Close]
BLAST of CsaV3_3G040890 vs. NCBI nr
Match: XP_008443348.1 (PREDICTED: CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 715.3 bits (1845), Expect = 1.2e-202
Identity = 401/432 (92.82%), Postives = 411/432 (95.14%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRA LLFRSSSLNQLSFRPIL IPDTVFSQIK FPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLVV+QGKPKFETH VDPPKKE  XXXXXXXXXXXXXXXXXXXX    XXXXXXXXX
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
           XXXX PNAAERIKNKLE ARIKEALLIERL+RYEVP+VQGP+VKPH+LT EERFYIKKMG
Sbjct: 121 XXXXXPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGK+YVQPEVMSPI TLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YRHIALYGDPNDRNPLSILNVPSDNL NSDK+QITNMEDSHSAALCL SDVMNQRNPDFS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFS 360

Query: 361 DDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNK 420
           DDESLDIGD F DACFSTSESDFESDKLDES +GR+EVSVSQTEE+ STTMNTCSAF NK
Sbjct: 361 DDESLDIGDEFGDACFSTSESDFESDKLDESDDGRIEVSVSQTEEMFSTTMNTCSAFQNK 420

Query: 421 CEFHKQELPIHS 432
           CEFHKQELPIHS
Sbjct: 421 CEFHKQELPIHS 432

[Close]
BLAST of CsaV3_3G040890 vs. NCBI nr
Match: XP_022935659.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata])

HSP 1 Score: 643.7 bits (1659), Expect = 4.6e-181
Identity = 363/431 (84.22%), Postives = 393/431 (91.18%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRA LLFRSSSLNQ  FRP+L +PD+ FS+IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLV+SQGKPKFETHEVDPPKK+  XXXXXXXXXXXXXXXXXXXX    XXXXXXXXX
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
           XXXX      RIK+KLE ARIKEALLIERL+RYEVP+VQGP+V+PH+LT EERFY+KKMG
Sbjct: 121 XXXXXXXXXXRIKHKLEKARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV+CKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGK+YVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YRH+ALYGDPNDRNPLSIL++PSDNL NS K+Q+  MEDSHSAALCLASDVMN+RNP+FS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFS 360

Query: 361 DDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNK 420
           DDESL+IG+ FAD+CFSTSES+FESD LD+   GR+E S SQT E+SSTTMNTCSA  NK
Sbjct: 361 DDESLEIGEEFADSCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNK 420

Query: 421 CEFHKQELPIH 431
            EFH QELPIH
Sbjct: 421 FEFHNQELPIH 431

[Close]
BLAST of CsaV3_3G040890 vs. NCBI nr
Match: XP_023526219.1 (CRM-domain containing factor CFM2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 633.3 bits (1632), Expect = 6.2e-178
Identity = 357/431 (82.83%), Postives = 387/431 (89.79%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRA LLFRSSSLNQ  FRP+  +PD+ FS IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVFGVPDSTFSHIKIFPLLNISKPLLGFRNLSY 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLV+SQGKPKFETHEVDPPKK+   XXXXXXXXXXXXXXXXXXX    XXXXXXXXX
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
           XXXX       IK+KLE ARIKEALLIERL+RYEVPKVQGP+V+PH+LT EERFY+KKMG
Sbjct: 121 XXXXXXXXXXXIKHKLEKARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKV+CKPCKPGQV EYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVREYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGK+YVQPEVMSPIDTLSKKRALEKSKYEQSLE VRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLECVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YRH+ALYGDPNDRNPLSIL++PSDNL NS K+Q+  MEDSHSAALCLASDVMN++NP+FS
Sbjct: 301 YRHVALYGDPNDRNPLSILDLPSDNLKNSQKHQVDEMEDSHSAALCLASDVMNKQNPEFS 360

Query: 361 DDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNK 420
           DDESL+IG+ FAD+CFSTSES+FESD LD+   GR+E S SQT E+SSTTMNTCSA  NK
Sbjct: 361 DDESLEIGEEFADSCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNK 420

Query: 421 CEFHKQELPIH 431
            E+H QELPIH
Sbjct: 421 FEYHNQELPIH 431

[Close]
BLAST of CsaV3_3G040890 vs. TAIR10
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 374.8 bits (961), Expect = 7.2e-104
Identity = 202/322 (62.73%), Postives = 233/322 (72.36%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +    LR+A    RSS    +S R +L I    +     F     ++P+   RN SH
Sbjct: 1   MAIAFARGLRKASSFLRSSYPLLISSR-LLPISQEFYDSTLTF--VLPTRPIC--RNFSH 60

Query: 61  --GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXX 120
             G+VNLV+S+GKPKFET E+DPPKK                       N++D       
Sbjct: 61  GYGTVNLVISEGKPKFETRELDPPKKYKWLTKKRLKLKRKKEREERNAANRKD-PRRLTV 120

Query: 121 XXXXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKK 180
                 F NA ERIK KLE A+IKEALLIERL+RYEV KVQGP V+PH++TGEERFY+KK
Sbjct: 121 KGKKKKFVNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKK 180

Query: 181 MGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGI 240
           MGQKRSNYVPIGRRGVFGGVILNMH+HWKKHETVKV C   KPGQV +YA+E+A+LSGG+
Sbjct: 181 MGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGV 240

Query: 241 PIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELE 300
           P+ IIGDDTIIFYRGK YVQP+VMSPIDTLSKKRA EKSKYEQSLESVR FIAIAEKELE
Sbjct: 241 PVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELE 300

Query: 301 LYYRHIALYGDPNDRNPLSILN 321
           LYYRH+ALY DPN+RNPLSIL+
Sbjct: 301 LYYRHVALYDDPNNRNPLSILD 316

[Close]
BLAST of CsaV3_3G040890 vs. TAIR10
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-61
Identity = 112/181 (61.88%), Postives = 141/181 (77.90%), Query Frame = 0 

Query: 126 PNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSN 185
           PN   RI+ KLE A+ KE  LIE+LR+Y+VPK       P  LT EE+ Y+K+ G+KR N
Sbjct: 140 PNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKN 199

Query: 186 YVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPC-KPGQVHEYAQEIARLSGGIPIQIIG 245
           +V +GRRGVFGGV+LN+H+HWKKHETVKV CKPC KPGQVHEYA+E+ARLS GI I +  
Sbjct: 200 FVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKP 259

Query: 246 DDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHI 305
           ++TI+ YRGK+YV+PEVMSP+DTLSK +ALEK +YEQSLE    FI   EKELE Y++++
Sbjct: 260 NNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYV 319

[Close]
BLAST of CsaV3_3G040890 vs. TAIR10
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 169.1 bits (427), Expect = 6.0e-42
Identity = 88/172 (51.16%), Postives = 118/172 (68.60%), Query Frame = 0 

Query: 130 ERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPI 189
           E+I NKL  AR KE  L+E +++ E  +       P  LT EE FY  KMG K  NYVP+
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPV 198

Query: 190 GRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTII 249
           GRRG++ GVILNMH+HWKKH+T++V  K   P +V E A E+ARL+GGI + +   +TII
Sbjct: 199 GRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTII 258

Query: 250 FYRGKDYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 300
            YRGK+YVQP  E+MSP  TL +K+AL+KSK   +L +VR++I   E+EL+L
Sbjct: 259 MYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQL 310

[Close]
BLAST of CsaV3_3G040890 vs. TAIR10
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-38
Identity = 78/168 (46.43%), Postives = 116/168 (69.05%), Query Frame = 0 

Query: 130 ERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPI 189
           ER+   L+ A+ K ALL+++L++Y++P++  P+  P   T E+    KK+G K  NYVP+
Sbjct: 54  ERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPV 113

Query: 190 GRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTII 249
           G RGVFGGV+ NMHMHWK HETV+V C      ++ E A  IARLSGG+ I I    TII
Sbjct: 114 GVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTII 173

Query: 250 FYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKEL 298
            +RG++Y QP+ + P++TL+K++AL K+++EQ+LES +  I   E++L
Sbjct: 174 MFRGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221

[Close]
BLAST of CsaV3_3G040890 vs. TAIR10
Match: AT3G18390.1 (CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-20
Identity = 61/173 (35.26%), Postives = 97/173 (56.07%), Query Frame = 0 

Query: 130 ERIKNKLENARIKEALLIERLRRYEVPKV-QGPMVKPHDLTGEERFYIKKMGQKRSNYVP 189
           +RI++KL  A+ K     + L + E   +  GP      ++ EER   +K+G K   Y+P
Sbjct: 614 KRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLP 673

Query: 190 IGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI---QIIGD 249
           IG RGVF GVI NMH+HWK  E VK+  K      V E A+ +   SGG+ +   ++   
Sbjct: 674 IGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKG 733

Query: 250 DTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELE 299
             +I+YRGK+Y +P  + P + L+K +AL++S   Q  E++ + I+  E+ +E
Sbjct: 734 FALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIE 786

[Close]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match: sp|Q67XL4|Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-40
Identity = 88/172 (51.16%), Postives = 118/172 (68.60%), Query Frame = 0 

Query: 130 ERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPI 189
           E+I NKL  AR KE  L+E +++ E  +       P  LT EE FY  KMG K  NYVP+
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPV 198

Query: 190 GRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTII 249
           GRRG++ GVILNMH+HWKKH+T++V  K   P +V E A E+ARL+GGI + +   +TII
Sbjct: 199 GRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTII 258

Query: 250 FYRGKDYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELEL 300
            YRGK+YVQP  E+MSP  TL +K+AL+KSK   +L +VR++I   E+EL+L
Sbjct: 259 MYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQL 310

[Close]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match: sp|Q8L7C2|CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-18
Identity = 85/316 (26.90%), Postives = 143/316 (45.25%), Query Frame = 0 

Query: 130 ERIKNKLENARIKEA---LLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNY 189
           E+   KL  A  K+A    ++  L   E P++    +    +T +E++ ++K+G K   +
Sbjct: 540 EKTSMKLSMALEKKANAEKVLADLENRESPQLSD--IDKEGITNDEKYMLRKIGLKMKPF 599

Query: 190 VPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI---QII 249
           + +GRRGVF G I NMH+HWK  E VK+ C        H+ A+ +   SGGI +    + 
Sbjct: 600 LLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVS 659

Query: 250 GDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRH 309
               II YRGK+Y +P+ + P   LSK+ AL++S   Q  +S++  +      +E   R 
Sbjct: 660 KGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQ 719

Query: 310 IALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHS--------AALCLASDVMNQRN 369
           +      N+          SD  +S+       E+ H+          L  +SD+     
Sbjct: 720 LVEDSATNE--------TWSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDL---SV 779

Query: 370 PDFSDDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSA 429
           P   ++   D  +G  D   +TS  +++ D+ + +   R E +   +    S    T SA
Sbjct: 780 PSSGEENWEDDSEGEVDP-LTTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSA 839

Query: 430 FPNKCEFHKQELPIHS 432
             N   FH + LP +S
Sbjct: 840 --NASSFHDRSLPHNS 839

[Close]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match: sp|Q2R1U8|CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=CFM3 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-18
Identity = 64/211 (30.33%), Postives = 104/211 (49.29%), Query Frame = 0 

Query: 165 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 224
           P  +T EERF  +K+G +   ++ +GRRGVF G I NMH+HWK  E VK+  K    G V
Sbjct: 589 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDV 648

Query: 225 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 284
            + A  +   SGGI +   ++     I+ +RGKDY +P  + P + LSK++AL +S   Q
Sbjct: 649 KKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQ 708

Query: 285 SLESVRRFIAIAEKELELYYRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHS 344
             E++   IA   + ++     +       +   + +        +SD+  + + +D   
Sbjct: 709 RREALSHHIATLNRRVKKLKAELLQMEGVKEEGDVELYAKLDSAYSSDEEDVEDEDD--E 768

Query: 345 AALCLASDVMNQRNPDFSDDESLDIGDGFAD 373
           A L    + +  +N D  D  SLD  D  +D
Sbjct: 769 AYLRSFDNSVAVQNGD--DRTSLDGSDANSD 795

[Close]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match: sp|F4J2U9|CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM3A PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-17
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 0 

Query: 165 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 224
           P  +T EERF  +K+G K   ++ +GRRGVF G + NMH+HWK  E VK+  K      V
Sbjct: 635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694

Query: 225 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 284
            + A  +   SGGI +   ++     II YRG+DY +P ++ P + L+K++AL +S   Q
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQ 754

Query: 285 SLESVRRFIA 292
             E + + I+
Sbjct: 755 RREGLLKHIS 764

[Close]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match: sp|A7XN92|CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays OX=4577 GN=CFM3 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-17
Identity = 49/137 (35.77%), Postives = 77/137 (56.20%), Query Frame = 0 

Query: 165 PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQV 224
           P  +T EERF  +K+G +   ++ +GRRGVF G I NMH+HWK  E VK+  K      V
Sbjct: 581 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 640

Query: 225 HEYAQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQ 284
              A  +   SGGI +   ++     I+ +RGK+Y +P  + P + LSK++AL +S   Q
Sbjct: 641 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQ 700

Query: 285 SLESVRRFIAIAEKELE 299
             +++ R  A   +++E
Sbjct: 701 RHQALSRHFAKLNRKVE 717

[Close]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match: tr|A0A0A0LF61|A0A0A0LF61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV=1)

HSP 1 Score: 740.3 bits (1910), Expect = 2.4e-210
Identity = 402/431 (93.27%), Postives = 403/431 (93.50%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLVVSQGKPKFETHEVDPPKK XXXXXXXXXXXXXXXXXXXXX NKRD         
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKXXXXXXXXXXXXXXXXXXXXXXANKRDP-------- 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
                         +   ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG
Sbjct: 121 --------------RQLRARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360

Query: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 420
           DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC
Sbjct: 361 DESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKC 409

Query: 421 EFHKQELPIHS 432
           EFHKQELPIHS
Sbjct: 421 EFHKQELPIHS 409

[Close]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match: tr|A0A1S3B7C2|A0A1S3B7C2_CUCME (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486957 PE=4 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 8.2e-203
Identity = 401/432 (92.82%), Postives = 411/432 (95.14%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAKSLFHNLRRA LLFRSSSLNQLSFRPIL IPDTVFSQIK FPEANISKPLLGFRNLSH
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLVV+QGKPKFETH VDPPKKE  XXXXXXXXXXXXXXXXXXXX    XXXXXXXXX
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
           XXXX PNAAERIKNKLE ARIKEALLIERL+RYEVP+VQGP+VKPH+LT EERFYIKKMG
Sbjct: 121 XXXXXPNAAERIKNKLERARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMG 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTIIFYRGK+YVQPEVMSPI TLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIIFYRGKEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFS 360
           YRHIALYGDPNDRNPLSILNVPSDNL NSDK+QITNMEDSHSAALCL SDVMNQRNPDFS
Sbjct: 301 YRHIALYGDPNDRNPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFS 360

Query: 361 DDESLDIGDGFADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNK 420
           DDESLDIGD F DACFSTSESDFESDKLDES +GR+EVSVSQTEE+ STTMNTCSAF NK
Sbjct: 361 DDESLDIGDEFGDACFSTSESDFESDKLDESDDGRIEVSVSQTEEMFSTTMNTCSAFQNK 420

Query: 421 CEFHKQELPIHS 432
           CEFHKQELPIHS
Sbjct: 421 CEFHKQELPIHS 432

[Close]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match: tr|A0A2P4KZG9|A0A2P4KZG9_QUESU (Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_14835 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.8e-118
Identity = 244/350 (69.71%), Postives = 268/350 (76.57%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MAK +F NLRRA  L R S    L  R   E  +++F   K F   N + P   +RNLSH
Sbjct: 1   MAKVMFRNLRRASSLLRVS----LPLRSNFEAQESIFIITKHFLPLNQTSPSWAYRNLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           GSVNLV+SQGKPKFETHEVDPPKK        XXXXXXXXXXXXXXX  RD         
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKHKWQTKKRXXXXXXXXXXXXXXXXXRDPRYLGVKGK 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
               F NA ERIK KLE A+IKEA+LIERL+RYEVP+ QGP+VKPH+LTGEERFY+KKM 
Sbjct: 121 KKQKFANAEERIKYKLEKAKIKEAMLIERLKRYEVPQAQGPVVKPHELTGEERFYMKKMA 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRG+FGGVILNMHMHWKKHETVKV C  CKPGQ  EYAQEIARLSGGIPI
Sbjct: 181 QKRSNYVPIGRRGIFGGVILNMHMHWKKHETVKVICNSCKPGQAQEYAQEIARLSGGIPI 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDD IIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIA+KELELY
Sbjct: 241 QIIGDDVIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIADKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVP-SDNLNSDKYQITNMEDSHSAALCLASD 350
           YRHIALYGDPNDRNP+SIL+ P   +  S KY+  +++ +        SD
Sbjct: 301 YRHIALYGDPNDRNPISILDEPRKAHKKSGKYEKKSLDSTSDCFHTALSD 346

[Close]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match: tr|A0A0D2S106|A0A0D2S106_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G229000 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 1.0e-115
Identity = 251/395 (63.54%), Postives = 290/395 (73.42%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +LF +LRRA  L  S S+ + SF   L    T+FS  K     N +      R+LSH
Sbjct: 1   MATALFRSLRRASRL--SDSILRHSFS--LSSQATIFSPSKLLVLPNPTTLPWVSRHLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           G+VNLV+SQGKPKFETH+ DPPKKE      XXXXXXXXXXXXXXXXN+RD         
Sbjct: 61  GTVNLVISQGKPKFETHQFDPPKKEKWKTKKXXXXXXXXXXXXXXXXNRRDPRRLGLTRK 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
               F NA ERIK KL+ A++KE LL+ERL+RYEV KVQGP+VKPH+LTGEERFY+KKM 
Sbjct: 121 PKKKFANAEERIKYKLDKAKVKEGLLLERLKRYEVSKVQGPVVKPHELTGEERFYMKKMA 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRG+FGGVILNMHMHWKKHETVKV CKPCKPGQVH+YA EIARLSGGIP+
Sbjct: 181 QKRSNYVPIGRRGIFGGVILNMHMHWKKHETVKVICKPCKPGQVHDYADEIARLSGGIPV 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTI+FYRGK+YVQPEVMSP+DTLSKKRALEKSKYEQSL+SVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIVFYRGKNYVQPEVMSPVDTLSKKRALEKSKYEQSLDSVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRH+ALYGDPN+RNP+SIL+ P+     DK   T  +DSH       S  ++ +  D  D
Sbjct: 301 YRHVALYGDPNNRNPISILDSPT---REDKETETLEKDSHDLTPTRFSSGISAKKVDPID 360

Query: 361 DESLDIGDGF--ADACFSTSESDFESDKLDESGEG 394
           +E  +  D     D     S+S+ E    DE  EG
Sbjct: 361 EELSETEDDLKGEDLPMRGSDSEKEVSCFDEESEG 388

[Close]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match: tr|A0A0B0NTS9|A0A0B0NTS9_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_03323 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.8e-115
Identity = 255/415 (61.45%), Postives = 296/415 (71.33%), Query Frame = 0 

Query: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60
           MA +LF +L RA  L  S S+ + SF   L    T+FS  K     N +      R LSH
Sbjct: 1   MATALFRSLCRASRL--SDSILRHSFS--LSSQATIFSPSKLLVPPNPTTLPWVSRYLSH 60

Query: 61  GSVNLVVSQGKPKFETHEVDPPKKEXXXXXXXXXXXXXXXXXXXXXXNKRDXXXXXXXXX 120
           G+VNLV+SQGKPKFETH+ DPPKKE      XXXXXXXXXXXXXXXXN+RD         
Sbjct: 61  GTVNLVISQGKPKFETHQFDPPKKEKWKTKKXXXXXXXXXXXXXXXXNRRDPRRLGLTRK 120

Query: 121 XXXXFPNAAERIKNKLENARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMG 180
               F NA ERIK KL+ A+IKE LL+ERL+RYEVPKVQGP+VKPH+LTGEERFY+KKM 
Sbjct: 121 PKKKFANAEERIKYKLDKAKIKEGLLLERLKRYEVPKVQGPVVKPHELTGEERFYMKKMA 180

Query: 181 QKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPI 240
           QKRSNYVPIGRRG+FGGVILNMHMHWKKHETVKV CKPCKPGQVH+YA EIARLSGGIP+
Sbjct: 181 QKRSNYVPIGRRGIFGGVILNMHMHWKKHETVKVICKPCKPGQVHDYADEIARLSGGIPV 240

Query: 241 QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300
           QIIGDDTI+FYRGK+YVQPEVMSP+DTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY
Sbjct: 241 QIIGDDTIVFYRGKNYVQPEVMSPVDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELY 300

Query: 301 YRHIALYGDPNDRNPLSILNVPSDNLNSDKYQITNMEDSHSAALCLASDVMNQRNPDFSD 360
           YRH+ALYGDPN+R+P+SIL+ P+     +K   T  +DSH       S  ++ +  D  D
Sbjct: 301 YRHVALYGDPNNRDPISILDSPT---RENKETQTLEKDSHDLTPTRFSSGISAKKVDPID 360

Query: 361 DESLDIGDGF--ADACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTC 414
           +E  +  D     D+    S+S+ E    DE  EG         EE  S + + C
Sbjct: 361 EELSETEDDLKGEDSPMRVSDSEKEVSCFDEESEGITSGLHESDEEDWSLSDSCC 408

The following BLAST results are available for this feature:
BLAST of CsaV3_3G040890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136676.15.4e-222100.00PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplasti... [more]
KGN59514.13.6e-21093.27hypothetical protein Csa_3G823620 [Cucumis sativus][more]
XP_008443348.11.2e-20292.82PREDICTED: CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucum... [more]
XP_022935659.14.6e-18184.22uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
XP_023526219.16.2e-17882.83CRM-domain containing factor CFM2, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_3G040890 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28480.17.2e-10462.73RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT4G13070.14.4e-6161.88RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G25440.16.0e-4251.16RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G27550.13.1e-3846.43RNA-binding CRS1 / YhbY (CRM) domain protein[more]
AT3G18390.12.9e-2035.26CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of CsaV3_3G040890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q67XL4|Y3544_ARATH1.1e-4051.16Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid... [more]
sp|Q8L7C2|CFM2_ARATH3.4e-1826.90CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|Q2R1U8|CFM3_ORYSJ3.4e-1830.33CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
sp|F4J2U9|CFM3A_ARATH2.2e-1737.69CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
sp|A7XN92|CFM3_MAIZE3.8e-1735.77CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays OX=45... [more]
BLAST of CsaV3_3G040890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF61|A0A0A0LF61_CUCSA2.4e-21093.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV=1[more]
tr|A0A1S3B7C2|A0A1S3B7C2_CUCME8.2e-20392.82CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo O... [more]
tr|A0A2P4KZG9|A0A2P4KZG9_QUESU2.8e-11869.71Putative crm domain-containing protein, chloroplastic OS=Quercus suber OX=58331 ... [more]
tr|A0A0D2S106|A0A0D2S106_GOSRA1.0e-11563.54Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G229000 PE=4 ... [more]
tr|A0A0B0NTS9|A0A0B0NTS9_GOSAR3.8e-11561.45Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_03323 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035920YhbY_like_sf
IPR001890RNA-binding_CRM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G040890.1CsaV3_3G040890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 129..149
NoneNo IPR availableCOILSCoilCoilcoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 381..403
NoneNo IPR availablePANTHERPTHR31426FAMILY NOT NAMEDcoord: 1..399
NoneNo IPR availablePANTHERPTHR31426:SF2SUBFAMILY NOT NAMEDcoord: 1..399
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 168..252
e-value: 5.9E-25
score: 98.9
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 168..252
e-value: 4.3E-19
score: 68.4
IPR001890RNA-binding, CRM domainPROSITEPS51295CRMcoord: 166..263
score: 18.523
IPR035920YhbY-like superfamilyGENE3DG3DSA:3.30.110.60coord: 166..281
e-value: 7.2E-10
score: 40.5
IPR035920YhbY-like superfamilySUPERFAMILYSSF75471YhbY-likecoord: 168..262