CsaV3_3G039510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 32491198 .. 32491584 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTACGACTTGCCATAAATTATTTCACCCCAAAAGATCTCATACCAGTGGATAAAGTTGCCCACACGTGTATACCCATGATCACTCTTCTCCAATCAATATGTGATTTTGTACGCACTCCTACAATCCTCTCCTCCACCAAGTACCACTTTGAGCTTACCCTCGAACAAATCTATTTCACTCCCACCACGAGAGCTTGCTCTAAATTTCAAACACCTTCCCTTCACCTTCGGTCACTTGCTCACCCGAGCACAAGCATAGACCACACGTATACTTATCACCAGACTAGAACACAAACAAGACTCACAAAGTTTCTTTGTTCAAATTTGAAGATTTCACTCACACAGTTGGACCTAGACCAAGGCTCGGCTACCAATTATTAG

mRNA sequence

ATGATACTACGACTTGCCATAAATTATTTCACCCCAAAAGATCTCATACCAGTGGATAAAGTTGCCCACACGTGTATACCCATGATCACTCTTCTCCAATCAATATGTGATTTTGTACGCACTCCTACAATCCTCTCCTCCACCAAGTACCACTTTGAGCTTACCCTCGAACAAATCTATTTCACTCCCACCACGAGAGCTTGCTCTAAATTTCAAACACCTTCCCTTCACCTTCGGTCACTTGCTCACCCGAGCACAAGCATAGACCACACGTATACTTATCACCAGACTAGAACACAAACAAGACTCACAAAGTTTCTTTGTTCAAATTTGAAGATTTCACTCACACAGTTGGACCTAGACCAAGGCTCGGCTACCAATTATTAG

Coding sequence (CDS)

ATGATACTACGACTTGCCATAAATTATTTCACCCCAAAAGATCTCATACCAGTGGATAAAGTTGCCCACACGTGTATACCCATGATCACTCTTCTCCAATCAATATGTGATTTTGTACGCACTCCTACAATCCTCTCCTCCACCAAGTACCACTTTGAGCTTACCCTCGAACAAATCTATTTCACTCCCACCACGAGAGCTTGCTCTAAATTTCAAACACCTTCCCTTCACCTTCGGTCACTTGCTCACCCGAGCACAAGCATAGACCACACGTATACTTATCACCAGACTAGAACACAAACAAGACTCACAAAGTTTCTTTGTTCAAATTTGAAGATTTCACTCACACAGTTGGACCTAGACCAAGGCTCGGCTACCAATTATTAG

Protein sequence

MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIYFTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDLDQGSATNY
Homology
[Close]
BLAST of CsaV3_3G039510 vs. NCBI nr
Match: KGN59371.1 (hypothetical protein Csa_3G814380 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 9.5e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY 60
           MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY
Sbjct: 1   MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY 60

Query: 61  FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL 120
           FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL
Sbjct: 61  FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL 120

Query: 121 DQGSATNY 129
           DQGSATNY
Sbjct: 121 DQGSATNY 128

[Close]
BLAST of CsaV3_3G039510 vs. TrEMBL
Match: tr|A0A0A0LH50|A0A0A0LH50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814380 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.3e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY 60
           MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY
Sbjct: 1   MILRLAINYFTPKDLIPVDKVAHTCIPMITLLQSICDFVRTPTILSSTKYHFELTLEQIY 60

Query: 61  FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL 120
           FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL
Sbjct: 61  FTPTTRACSKFQTPSLHLRSLAHPSTSIDHTYTYHQTRTQTRLTKFLCSNLKISLTQLDL 120

Query: 121 DQGSATNY 129
           DQGSATNY
Sbjct: 121 DQGSATNY 128

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59371.19.5e-66100.00hypothetical protein Csa_3G814380 [Cucumis sativus][more]
BLAST of CsaV3_3G039510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LH50|A0A0A0LH50_CUCSA6.3e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814380 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G039510.1CsaV3_3G039510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G039510Cucsa.337170Cucumber (Gy14) v1cgycucB523
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G039510Silver-seed gourdcarcucB0178
CsaV3_3G039510Silver-seed gourdcarcucB0279
CsaV3_3G039510Cucumber (Gy14) v2cgybcucB117
CsaV3_3G039510Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G039510Cucurbita maxima (Rimu)cmacucB0976
CsaV3_3G039510Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G039510Cucurbita moschata (Rifu)cmocucB0962
CsaV3_3G039510Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G039510Cucurbita pepo (Zucchini)cpecucB1060
CsaV3_3G039510Wild cucumber (PI 183967)cpicucB145
CsaV3_3G039510Bottle gourd (USVL1VR-Ls)cuclsiB182
CsaV3_3G039510Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G039510Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G039510Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G039510Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G039510Watermelon (97103) v1cucwmB208
CsaV3_3G039510Watermelon (97103) v2cucwmbB187
CsaV3_3G039510Wax gourdcucwgoB227