CsaV3_3G039360 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G039360
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr3 : 32350270 .. 32351116 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGGTAACGTTCGATGATGTGTAAGTTTGTTGTAGGTTAATAAATTTTAAAAAGCATCACTTACGTTTATGAACTAATTTTTTGTCTAATAAGAGTTAACACTGATACAGCATCTTAATTAGATTAGTAAGTGATGGGTTTACATGAACAAGAGAATAGGCCTACTGAAGAAAATGAAGGAAGACAGTAAAAAAAAAATTAGTGACCAAGTAGGCTAAATCCATTCTAAATAATGTAAATCAACTTTGCAACCATAAGAGAACTCTAATTACACGTTTCTTCTTTTACAAGTTCATCTTCTCAGCGTCAGTTCTGGTTCTTGTTTGGTACAAGTTCTGGGTTTTGACAGTTATGCACATATTAAGATAAATCTTATTTTCTTGCTTTTGTCAATTATTTTCAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

mRNA sequence

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

Coding sequence (CDS)

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

Protein sequence

MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAGPCDFPRCSISMCSRWTCLSRSKILVTHA

Homology

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BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_004136598.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-like [Cucumis sativus] >KGN59357.1 hypothetical protein Csa_3G812780 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTALVDM
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDM 237

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_008443148.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like, partial [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 199 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 258

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 259 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 310

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_023528910.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG++PDA+TLVSVVSACA+AGALDIG W+HAYIEK  VLTDLEL TALVDM
Sbjct: 229 MGLFREMQKAGVEPDAVTLVSVVSACALAGALDIGSWVHAYIEKRSVLTDLELGTALVDM 288

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPV+DT AWSSMIMGFAYHGL++DAI AFQQMLE E
Sbjct: 289 YAKCGCIERAKQVFVHMPVRDTRAWSSMIMGFAYHGLSEDAIGAFQQMLEAE 340

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BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_022934601.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 8.8e-47
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG++PDA+TLVSVVSACA AGALDIG W+HAYIEK+ VLTDLEL TALVDM
Sbjct: 227 MGLFREMQKAGVEPDAVTLVSVVSACAAAGALDIGSWVHAYIEKHSVLTDLELGTALVDM 286

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPV+DT AWSSMIMGFAYHGL++DAI  F+QMLE E
Sbjct: 287 YAKCGCIERAKQVFVHMPVRDTRAWSSMIMGFAYHGLSEDAIGVFRQMLEAE 338

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_022154217.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like, partial [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 2.5e-46
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+ PDA+TLVSVVSACAVAGALDIG WLHAYIEKYFV TDLEL TAL+DM
Sbjct: 217 MGLFREMQKAGVGPDAVTLVSVVSACAVAGALDIGCWLHAYIEKYFVSTDLELETALLDM 276

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVF  MPVKDT AWSSMIMGFA HGL++DAIDAFQQMLE +
Sbjct: 277 YAKCGCIERAKQVFDSMPVKDTRAWSSMIMGFACHGLSEDAIDAFQQMLEAK 328

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BLAST of CsaV3_3G039360 vs. TAIR10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-24
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 7   MQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGC 66
           MQ AGI+PD   LVS+++ CA  GAL+ G W+H YI +  V  D  + TALVDMYAKCGC
Sbjct: 270 MQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGC 329

Query: 67  IERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           IE A +VF  +  +DT +W+S+I G A +G++  A+D + +M
Sbjct: 330 IETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEM 371

[Close]

BLAST of CsaV3_3G039360 vs. TAIR10
Match: AT2G20540.1 (mitochondrial editing factor 21)

HSP 1 Score: 107.5 bits (267), Expect = 7.4e-24
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 6   EMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCG 65
           EMQ AGI+PD ++L+SV+ +CA  G+L++G W+H Y E+   L    +  AL++MY+KCG
Sbjct: 231 EMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCG 290

Query: 66  CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
            I +A Q+F  M  KD  +WS+MI G+AYHG A  AI+ F +M
Sbjct: 291 VISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333

[Close]

BLAST of CsaV3_3G039360 vs. TAIR10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-22
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 3   LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYF--VLTDLELSTALVDM 62
           LF+EM ++G  P+ +T++S++ ACA  GA+DIG W+H YI+K    V     L T+L+DM
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413

Query: 63  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           YAKCG IE A QVF  +  K  ++W++MI GFA HG A  + D F +M
Sbjct: 414 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461

[Close]

BLAST of CsaV3_3G039360 vs. TAIR10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-22
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 8   QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCI 67
           Q AG+ PD  T+VSV++ACA  G+L+IG W+  YI+K  +  D+ +  AL+DMY KCGC 
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCS 419

Query: 68  ERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           E+A++VF  M  +D   W++M++G A +G  Q+AI  F QM
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

[Close]

BLAST of CsaV3_3G039360 vs. TAIR10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 9.1e-22
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +EL+  M+  G +PDA+++ SV+ AC    AL +G  +H YIE+  ++ +L L  AL+DM
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLET 112
           YAKCGC+E+A+ VF +M  +D  +W++MI  + + G   DA+  F ++ ++
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404

[Close]

BLAST of CsaV3_3G039360 vs. Swiss-Prot
Match: sp|Q9C866|PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-22
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 7   MQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGC 66
           MQ AGI+PD   LVS+++ CA  GAL+ G W+H YI +  V  D  + TALVDMYAKCGC
Sbjct: 270 MQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGC 329

Query: 67  IERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           IE A +VF  +  +DT +W+S+I G A +G++  A+D + +M
Sbjct: 330 IETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEM 371

[Close]

BLAST of CsaV3_3G039360 vs. Swiss-Prot
Match: sp|Q9SIL5|PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 6   EMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCG 65
           EMQ AGI+PD ++L+SV+ +CA  G+L++G W+H Y E+   L    +  AL++MY+KCG
Sbjct: 231 EMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCG 290

Query: 66  CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
            I +A Q+F  M  KD  +WS+MI G+AYHG A  AI+ F +M
Sbjct: 291 VISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333

[Close]

BLAST of CsaV3_3G039360 vs. Swiss-Prot
Match: sp|Q9LN01|PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-21
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 3   LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYF--VLTDLELSTALVDM 62
           LF+EM ++G  P+ +T++S++ ACA  GA+DIG W+H YI+K    V     L T+L+DM
Sbjct: 354 LFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDM 413

Query: 63  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           YAKCG IE A QVF  +  K  ++W++MI GFA HG A  + D F +M
Sbjct: 414 YAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461

[Close]

BLAST of CsaV3_3G039360 vs. Swiss-Prot
Match: sp|Q9LSB8|PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-21
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 8   QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCI 67
           Q AG+ PD  T+VSV++ACA  G+L+IG W+  YI+K  +  D+ +  AL+DMY KCGC 
Sbjct: 360 QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCS 419

Query: 68  ERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           E+A++VF  M  +D   W++M++G A +G  Q+AI  F QM
Sbjct: 420 EKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

[Close]

BLAST of CsaV3_3G039360 vs. Swiss-Prot
Match: sp|P0C899|PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +EL+  M+  G +PDA+++ SV+ AC    AL +G  +H YIE+  ++ +L L  AL+DM
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLET 112
           YAKCGC+E+A+ VF +M  +D  +W++MI  + + G   DA+  F ++ ++
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDS 404

[Close]

BLAST of CsaV3_3G039360 vs. TrEMBL
Match: tr|A0A0A0LF80|A0A0A0LF80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812780 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTALVDM
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDM 237

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

[Close]

BLAST of CsaV3_3G039360 vs. TrEMBL
Match: tr|A0A1S3B831|A0A1S3B831_CUCME (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486823 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 199 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 258

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 259 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 310

[Close]

BLAST of CsaV3_3G039360 vs. TrEMBL
Match: tr|A0A2N9IYY1|A0A2N9IYY1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57251 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 74/108 (68.52%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           ++LFREMQK G++PD +TLVSV+SACA+ G+LDIG W+HAY+EK  + TDLELSTALV+M
Sbjct: 118 LDLFREMQKMGVEPDKVTLVSVISACAILGSLDIGRWVHAYMEKQMIDTDLELSTALVNM 177

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           YAKCGCIERA +VF  MPVKDT AWS+MI+GFA +GL+ DA++AF +M
Sbjct: 178 YAKCGCIERANKVFHEMPVKDTKAWSTMIVGFAINGLSDDALEAFARM 225

[Close]

BLAST of CsaV3_3G039360 vs. TrEMBL
Match: tr|B9SUE8|B9SUE8_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0750390 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-35
Identity = 71/112 (63.39%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           + +FREMQ+ GI+PD ++LV V+SACA+AGALDIG W+HAYI+K  +  DLEL+TALV+M
Sbjct: 318 LSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNM 377

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIE+AK++F +MPVKD+ AWSSMI+G A HGLA+DA++ F +M E +
Sbjct: 378 YAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHGLAEDALEMFSRMEEAK 429

[Close]

BLAST of CsaV3_3G039360 vs. TrEMBL
Match: tr|F6HL02|F6HL02_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g08320 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.7e-35
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 3   LFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYA 62
           LFR+MQKAG+ PD +T+VSV+SACA +GALD G W+HAYI K  + TDLELSTALV+MYA
Sbjct: 180 LFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYA 239

Query: 63  KCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           KCGCIERAK+VF  MPVKDT AWSSMI+G A +GLA+DA++ F +M E +
Sbjct: 240 KCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAK 289

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136598.2	2.3e-55	99.11	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-...	[more]
XP_008443148.2	1.8e-52	92.86	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/...	[more]
XP_023528910.1	2.3e-47	85.71	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
XP_022934601.1	8.8e-47	83.93	pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata]	[more]
XP_022154217.1	2.5e-46	85.71	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

BLAST of CsaV3_3G039360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31430.1	5.7e-24	49.02	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G20540.1	7.4e-24	47.57	mitochondrial editing factor 21	[more]
AT1G08070.1	2.4e-22	47.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15930.1	3.1e-22	46.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49142.1	9.1e-22	38.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_3G039360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C866\|PPR65_ARATH	1.0e-22	49.02	Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SIL5\|PP165_ARATH	1.3e-22	47.57	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LN01\|PPR21_ARATH	4.3e-21	47.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
sp\|Q9LSB8\|PP235_ARATH	5.6e-21	46.53	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
sp\|P0C899\|PP271_ARATH	1.6e-20	38.74	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]

BLAST of CsaV3_3G039360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF80\|A0A0A0LF80_CUCSA	1.5e-55	99.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812780 PE=4 SV=1	[more]
tr\|A0A1S3B831\|A0A1S3B831_CUCME	1.2e-52	92.86	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
tr\|A0A2N9IYY1\|A0A2N9IYY1_FAGSY	1.6e-36	68.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57251 PE=4 SV=1	[more]
tr\|B9SUE8\|B9SUE8_RICCO	1.3e-35	63.39	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]
tr\|F6HL02\|F6HL02_VITVI	1.7e-35	68.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g08320 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039360.1	CsaV3_3G039360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 55..78 e-value: 0.0065 score: 16.5 coord: 84..110 e-value: 2.6E-4 score: 20.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 1..143 e-value: 1.8E-22 score: 82.1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..111
None	No IPR available	PANTHER	PTHR24015:SF838	SUBFAMILY NOT NAMED	coord: 2..111
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G039360	Carg03532	Silver-seed gourd	carcucB0279
CsaV3_3G039360	Cla97C10G199880	Watermelon (97103) v2	cucwmbB187
CsaV3_3G039360	Bhi11G002253	Wax gourd	cucwgoB227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G039360	Silver-seed gourd	carcucB0178
CsaV3_3G039360	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G039360	Cucumber (Gy14) v2	cgybcucB335
CsaV3_3G039360	Cucumber (Gy14) v1	cgycucB523
CsaV3_3G039360	Cucurbita maxima (Rimu)	cmacucB0279
CsaV3_3G039360	Cucurbita maxima (Rimu)	cmacucB0428
CsaV3_3G039360	Cucurbita maxima (Rimu)	cmacucB0976
CsaV3_3G039360	Cucurbita moschata (Rifu)	cmocucB0270
CsaV3_3G039360	Cucurbita moschata (Rifu)	cmocucB0962
CsaV3_3G039360	Cucurbita pepo (Zucchini)	cpecucB0747
CsaV3_3G039360	Cucurbita pepo (Zucchini)	cpecucB1060
CsaV3_3G039360	Wild cucumber (PI 183967)	cpicucB145
CsaV3_3G039360	Bottle gourd (USVL1VR-Ls)	cuclsiB203
CsaV3_3G039360	Melon (DHL92) v3.5.1	cucmeB218
CsaV3_3G039360	Melon (DHL92) v3.6.1	cucmedB211
CsaV3_3G039360	Watermelon (Charleston Gray)	cucwcgB199
CsaV3_3G039360	Watermelon (97103) v1	cucwmB208