CsaV3_3G038580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G038580
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 31783483 .. 31783854 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGTACCTTAAAATTCACAAAGTGCCACAGTATCCACTCGTAAATTAAGCCATATCTTGTCTTGTATCCCTGGGCAGACAGTTTCCCACTTCACTTTTGGTACATTTTATTTGAGCTAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

mRNA sequence

ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

Coding sequence (CDS)

ATGATGTTATCTGTCTCTCTTCTAGAATTAAATTCCATTGAGAATCTGCGGTTCAGGATTCAAAGCCTAATCTCCTCTTTCCATATTTGCTGTGAAGGAAGGAAGGGCCTGGCTGGTTGGTTGTCTCCTTTCCAGCAATCGAGGGGGGGTCACCAATGGGCACAGCAAGAAAAAGGGGAGGGCTATCTATGCTTTCGAGTACAGCCAGTAAGTGGTGGTGGCAGTGACTCAGATTGGTTTCAATTAGTTTCTTGA

Protein sequence

MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGEGYLCFRVQPVSGGGSDSDWFQLVS
Homology
[Close]
BLAST of CsaV3_3G038580 vs. NCBI nr
Match: KGN59275.1 (hypothetical protein Csa_3G798620 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 2.4e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60
          MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE
Sbjct: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60

Query: 61 GYLCFRVQPVSGGGSDSDWFQLVS 85
          GYLCFRVQPVSGGGSDSDWFQLVS
Sbjct: 61 GYLCFRVQPVSGGGSDSDWFQLVS 84

[Close]
BLAST of CsaV3_3G038580 vs. TrEMBL
Match: tr|A0A0A0LB82|A0A0A0LB82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G798620 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60
          MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE
Sbjct: 1  MMLSVSLLELNSIENLRFRIQSLISSFHICCEGRKGLAGWLSPFQQSRGGHQWAQQEKGE 60

Query: 61 GYLCFRVQPVSGGGSDSDWFQLVS 85
          GYLCFRVQPVSGGGSDSDWFQLVS
Sbjct: 61 GYLCFRVQPVSGGGSDSDWFQLVS 84

The following BLAST results are available for this feature:
BLAST of CsaV3_3G038580 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59275.12.4e-41100.00hypothetical protein Csa_3G798620 [Cucumis sativus][more]
BLAST of CsaV3_3G038580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G038580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G038580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB82|A0A0A0LB82_CUCSA1.6e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G798620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G038580.1CsaV3_3G038580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G038580CsGy3G033700Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G038580Silver-seed gourdcarcucB0279
CsaV3_3G038580Cucumber (Gy14) v1cgycucB363
CsaV3_3G038580Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G038580Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G038580Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G038580Wild cucumber (PI 183967)cpicucB145
CsaV3_3G038580Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G038580Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G038580Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G038580Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G038580Watermelon (97103) v1cucwmB208
CsaV3_3G038580Watermelon (97103) v2cucwmbB187
CsaV3_3G038580Wax gourdcucwgoB228