CsaV3_3G035960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G035960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 30003051 .. 30003528 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGGGGAATAACATGAAGTTGAAAGAACAGATGTCTAATTCACGGAAATACAGAGGCAGTGAGTTTGGTCAAAAAGCGTCAACAGCGAGCTTGGGACGTGTTTTCATCAATGAAAACTCAATGGTCAAGACGATTGGCAAGATCAGATTCTTCCAACTACTCTTTCGTTTCAAGTTAGAAACTTGAAAAACATTTCTTGGAGGATCTATGAATTTGAATGCTAAAATGGCAAGGAAGTAGGGTTCTGTTGGTTCTGAATCAGACAAGATGATGCCAAAGAGATCAAAACCACAGTAACGAAAGAGGTAAAAAGAAGCGAAGACTTGAATACATTTCTCAGACATTCCATAAACAAACCAGAAAATCTAAACCAATCATAATCTAACAGCCCGATCTCCAACGAGTTAAATGCCCTTCTGAAGCTCACTTTCACTCATCTCTTACACATTTGATTATTCTAATCTGGCACTGA

mRNA sequence

ATGGGGAAGGGGAATAACATGAAGTTGAAAGAACAGATGTCTAATTCACGGAAATACAGAGGCAGTGAGTTTGGTCAAAAAGCGTCAACAGCGAGCTTGGGACGTGTTTTCATCAATGAAAACTCAATGGTCAAGACGATTGGCAAGATCAGATTCTTCCAACTACTCTTTCGTTTCAAACAAGATGATGCCAAAGAGATCAAAACCACAGTAACGAAAGAGCCCGATCTCCAACGAGTTAAATGCCCTTCTGAAGCTCACTTTCACTCATCTCTTACACATTTGATTATTCTAATCTGGCACTGA

Coding sequence (CDS)

ATGGGGAAGGGGAATAACATGAAGTTGAAAGAACAGATGTCTAATTCACGGAAATACAGAGGCAGTGAGTTTGGTCAAAAAGCGTCAACAGCGAGCTTGGGACGTGTTTTCATCAATGAAAACTCAATGGTCAAGACGATTGGCAAGATCAGATTCTTCCAACTACTCTTTCGTTTCAAACAAGATGATGCCAAAGAGATCAAAACCACAGTAACGAAAGAGCCCGATCTCCAACGAGTTAAATGCCCTTCTGAAGCTCACTTTCACTCATCTCTTACACATTTGATTATTCTAATCTGGCACTGA

Protein sequence

MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFKQDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH
Homology
[Close]
BLAST of CsaV3_3G035960 vs. NCBI nr
Match: KGN58977.1 (hypothetical protein Csa_3G740200 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK 60
           MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK
Sbjct: 1   MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK 60

Query: 61  QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH 102
           QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH
Sbjct: 61  QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH 101

[Close]
BLAST of CsaV3_3G035960 vs. TrEMBL
Match: tr|A0A0A0LE18|A0A0A0LE18_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740200 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.2e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK 60
           MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK
Sbjct: 1   MGKGNNMKLKEQMSNSRKYRGSEFGQKASTASLGRVFINENSMVKTIGKIRFFQLLFRFK 60

Query: 61  QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH 102
           QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH
Sbjct: 61  QDDAKEIKTTVTKEPDLQRVKCPSEAHFHSSLTHLIILIWH 101

The following BLAST results are available for this feature:
BLAST of CsaV3_3G035960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58977.11.1e-48100.00hypothetical protein Csa_3G740200 [Cucumis sativus][more]
BLAST of CsaV3_3G035960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G035960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G035960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE18|A0A0A0LE18_CUCSA7.2e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740200 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G035960.1CsaV3_3G035960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G035960CsGy3G031050Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G035960Melon (DHL92) v3.5.1cucmeB177
CsaV3_3G035960Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G035960Melon (DHL92) v3.5.1cucmeB261
CsaV3_3G035960Melon (DHL92) v3.6.1cucmedB168
CsaV3_3G035960Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G035960Melon (DHL92) v3.6.1cucmedB256
CsaV3_3G035960Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G035960Watermelon (Charleston Gray)cucwcgB224
CsaV3_3G035960Watermelon (Charleston Gray)cucwcgB215
CsaV3_3G035960Watermelon (97103) v1cucwmB208
CsaV3_3G035960Watermelon (97103) v1cucwmB275
CsaV3_3G035960Watermelon (97103) v1cucwmB276
CsaV3_3G035960Watermelon (97103) v2cucwmbB187
CsaV3_3G035960Watermelon (97103) v2cucwmbB190
CsaV3_3G035960Watermelon (97103) v2cucwmbB197
CsaV3_3G035960Watermelon (97103) v2cucwmbB205
CsaV3_3G035960Wax gourdcucwgoB326
CsaV3_3G035960Wax gourdcucwgoB240
CsaV3_3G035960Wax gourdcucwgoB336
CsaV3_3G035960Cucumber (Chinese Long) v3cuccucB136
CsaV3_3G035960Cucumber (Chinese Long) v3cuccucB133
CsaV3_3G035960Cucumber (Chinese Long) v3cuccucB140
CsaV3_3G035960Silver-seed gourdcarcucB0181
CsaV3_3G035960Silver-seed gourdcarcucB0279
CsaV3_3G035960Silver-seed gourdcarcucB0476
CsaV3_3G035960Cucumber (Gy14) v2cgybcucB273
CsaV3_3G035960Cucumber (Gy14) v2cgybcucB268
CsaV3_3G035960Cucumber (Gy14) v1cgycucB170
CsaV3_3G035960Cucumber (Gy14) v1cgycucB472
CsaV3_3G035960Cucumber (Gy14) v1cgycucB584
CsaV3_3G035960Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G035960Cucurbita maxima (Rimu)cmacucB0656
CsaV3_3G035960Cucurbita maxima (Rimu)cmacucB0789
CsaV3_3G035960Cucurbita maxima (Rimu)cmacucB0966
CsaV3_3G035960Cucurbita maxima (Rimu)cmacucB1014
CsaV3_3G035960Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G035960Cucurbita pepo (Zucchini)cpecucB1057
CsaV3_3G035960Cucurbita moschata (Rifu)cmocucB0643
CsaV3_3G035960Cucurbita moschata (Rifu)cmocucB0772
CsaV3_3G035960Cucurbita moschata (Rifu)cmocucB0954
CsaV3_3G035960Cucurbita moschata (Rifu)cmocucB0997
CsaV3_3G035960Cucurbita pepo (Zucchini)cpecucB0070
CsaV3_3G035960Cucurbita pepo (Zucchini)cpecucB0343
CsaV3_3G035960Cucurbita pepo (Zucchini)cpecucB0594
CsaV3_3G035960Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G035960Wild cucumber (PI 183967)cpicucB144
CsaV3_3G035960Wild cucumber (PI 183967)cpicucB334
CsaV3_3G035960Wild cucumber (PI 183967)cpicucB338
CsaV3_3G035960Bottle gourd (USVL1VR-Ls)cuclsiB177
CsaV3_3G035960Bottle gourd (USVL1VR-Ls)cuclsiB185
CsaV3_3G035960Bottle gourd (USVL1VR-Ls)cuclsiB203