CsaV3_3G032120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G032120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Disease resistance protein N-like protein
Location	chr3 : 27740774 .. 27741138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAAAAACGTCCACCAAATTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACATTAGAGGAACATTTATAGGTCAAGCACCAAATGCTATCACTTGTTTAAGGAGTCTTGAAACTTTGAATTGTGAAAGGATTTCAAGAAATATTTGGTGGTCATTGATGGATTTGGTTGGGAGTAATGGTGTTTTGCCTATTACAGATTTGAATCAAAGTGATTGCAATCTCGTGGACGAAGATATTCCTGATGATATCAAATGTCTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTAAAAAAATTGATTTGGTTTTTGTGGTTTTTAAGTTTTTTCTAG

mRNA sequence

GGCTGCAAAAACGTCCACCAAATTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACATTAGAGGAACATTTATAGGTCAAGCACCAAATGCTATCACTTGTTTAAGGAGTCTTGAAACTTTGAATTGTGAAAGGATTTCAAGAAATATTTGGTGGTCATTGATGGATTTGGTTGGGAGTAATGGTGTTTTGCCTATTACAGATTTGAATCAAAGTGATTGCAATCTCGTGGACGAAGATATTCCTGATGATATCAAATGTCTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTAAAAAAATTGATTTGGTTTTTGTGGTTTTTAAGTTTTTTCTAG

Coding sequence (CDS)

GGCTGCAAAAACGTCCACCAAATTCCTTTCACTTTGGGGACAATACAATCTCTTACCATGCTTGACATTAGAGGAACATTTATAGGTCAAGCACCAAATGCTATCACTTGTTTAAGGAGTCTTGAAACTTTGAATTGTGAAAGGATTTCAAGAAATATTTGGTGGTCATTGATGGATTTGGTTGGGAGTAATGGTGTTTTGCCTATTACAGATTTGAATCAAAGTGATTGCAATCTCGTGGACGAAGATATTCCTGATGATATCAAATGTCTTTCCTTATTGGAAATTCTTGACCTTAGCAAGAATTCTTTTGTAAGGCTAAAAAAATTGATTTGGTTTTTGTGGTTTTTAAGTTTTTTCTAG

Protein sequence

GCKNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF

Homology

[Close]

BLAST of CsaV3_3G032120 vs. NCBI nr
Match: KGN58588.1 (hypothetical protein Csa_3G695840 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 4.4e-57
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 3   KNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 62
           K   + PFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG
Sbjct: 4   KTSTKFPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 63

Query: 63  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF 121
           SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF
Sbjct: 64  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF 121

[Close]

BLAST of CsaV3_3G032120 vs. NCBI nr
Match: KGN51226.1 (hypothetical protein Csa_5G495930 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 3   KNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 62
           K   + PFTLGTIQSLTMLD  GTFI QAPNAI  L+SLETLNCER+S+NIWWSL DLVG
Sbjct: 4   KTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVG 63

Query: 63  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKK 110
           SN VLPI DLN SDCN+VDEDI DDIKCL LLEILDLSKNSFVRLK+
Sbjct: 64  SNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQ 110

[Close]

BLAST of CsaV3_3G032120 vs. NCBI nr
Match: KGN53797.1 (hypothetical protein Csa_4G130620 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 4.3e-20
Identity = 60/89 (67.42%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 20  MLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSNGVLPITDLNQSDCNL 79
           MLDI GTFI QAPNA                       MDLVGSNGVLPI DLN SDCNL
Sbjct: 1   MLDIGGTFIDQAPNA-----------------------MDLVGSNGVLPIRDLNLSDCNL 60

Query: 80  VDEDIPDDIKCLSLLEILDLSKNSFVRLK 109
           VDEDIPDDIKC SLLEILDLSKN FVRLK
Sbjct: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 66

[Close]

BLAST of CsaV3_3G032120 vs. NCBI nr
Match: KGN52633.1 (hypothetical protein Csa_5G647550 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   GCKNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDL 60
           GCKN+ +IP  L  ++ L  LDI GT I   P     L +L  LNCER+  NIW SL  L
Sbjct: 583 GCKNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL 642

Query: 61  VGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLI 112
             +  +  + DLN SDCNLVDEDIP+D++  S LEILDLS N F RL + I
Sbjct: 643 -AAQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESI 688

[Close]

BLAST of CsaV3_3G032120 vs. NCBI nr
Match: XP_011656285.1 (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-17
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   GCKNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDL 60
           GCKN+ +IP  L  ++ L  LDI GT I   P     L +L  LNCER+  NIW SL  L
Sbjct: 809 GCKNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL 868

Query: 61  VGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLI 112
             +  +  + DLN SDCNLVDEDIP+D++  S LEILDLS N F RL + I
Sbjct: 869 -AAQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESI 914

[Close]

BLAST of CsaV3_3G032120 vs. TAIR10
Match: AT5G36930.2 (Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 40.4 bits (93), Expect = 9.1e-04
Identity = 34/103 (33.01%), Postives = 50/103 (48.54%), Query Frame = 0


Query: 5   VHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSN 64
           + +IP T+  ++ L  L + G   G   + I  L S ++ +          SL+  V  +
Sbjct: 731 LREIPSTINQLKKLKRLSLNGC-KGLLSDDIDNLYSEKSHSV---------SLLRPVSLS 790

Query: 65  GVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRL 108
           G+  +  L+   CNL DE IP+DI  LS L  LDL  NSF  L
Sbjct: 791 GLTYMRILSLGYCNLSDELIPEDIGSLSFLRDLDLRGNSFCNL 823

[Close]

BLAST of CsaV3_3G032120 vs. Swiss-Prot
Match: sp|Q40392|TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 34/111 (30.63%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 1   GCKNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDL 60
           GC  +  +P  +G + +L + D   T I + P++I  L  L  L        + +    +
Sbjct: 769 GCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPV 828

Query: 61  VGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLI 112
             + G+  +  LN S CNL+D  +P++I  LS L+ LDLS+N+F  L   I
Sbjct: 829 --AEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSI 877

[Close]

BLAST of CsaV3_3G032120 vs. TrEMBL
Match: tr|A0A0A0L9U0|A0A0A0L9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695840 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-57
Identity = 113/118 (95.76%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 3   KNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 62
           K   + PFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG
Sbjct: 4   KTSTKFPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 63

Query: 63  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF 121
           SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF
Sbjct: 64  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLIWFLWFLSFF 121

[Close]

BLAST of CsaV3_3G032120 vs. TrEMBL
Match: tr|A0A0A0KU16|A0A0A0KU16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G495930 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.5e-40
Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 3   KNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG 62
           K   + PFTLGTIQSLTMLD  GTFI QAPNAI  L+SLETLNCER+S+NIWWSL DLVG
Sbjct: 4   KTSTKFPFTLGTIQSLTMLDNGGTFIDQAPNAIARLKSLETLNCERLSKNIWWSLNDLVG 63

Query: 63  SNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKK 110
           SN VLPI DLN SDCN+VDEDI DDIKCL LLEILDLSKNSFVRLK+
Sbjct: 64  SNDVLPIRDLNLSDCNIVDEDIRDDIKCLFLLEILDLSKNSFVRLKQ 110

[Close]

BLAST of CsaV3_3G032120 vs. TrEMBL
Match: tr|A0A0A0KZJ1|A0A0A0KZJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130620 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.9e-20
Identity = 60/89 (67.42%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 20  MLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVGSNGVLPITDLNQSDCNL 79
           MLDI GTFI QAPNA                       MDLVGSNGVLPI DLN SDCNL
Sbjct: 1   MLDIGGTFIDQAPNA-----------------------MDLVGSNGVLPIRDLNLSDCNL 60

Query: 80  VDEDIPDDIKCLSLLEILDLSKNSFVRLK 109
           VDEDIPDDIKC SLLEILDLSKN FVRLK
Sbjct: 61  VDEDIPDDIKCFSLLEILDLSKNCFVRLK 66

[Close]

BLAST of CsaV3_3G032120 vs. TrEMBL
Match: tr|A0A0A0KST1|A0A0A0KST1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647550 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   GCKNVHQIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDL 60
           GCKN+ +IP  L  ++ L  LDI GT I   P     L +L  LNCER+  NIW SL  L
Sbjct: 583 GCKNLDKIPPCLRYVKHLEELDIGGTSISTIP----FLENLRILNCERLKSNIWHSLAGL 642

Query: 61  VGSNGVLPITDLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRLKKLI 112
             +  +  + DLN SDCNLVDEDIP+D++  S LEILDLS N F RL + I
Sbjct: 643 -AAQYLRSLNDLNLSDCNLVDEDIPNDLELFSSLEILDLSSNHFERLSESI 688

[Close]

BLAST of CsaV3_3G032120 vs. TrEMBL
Match: tr|A0A0A0KUQ5|A0A0A0KUQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647510 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 7   QIPFTLGTIQSLTMLDIRGTFIGQAPNAITCLRSLETLNCERISRNIWWSLMDLVG---- 66
           +IP +LG I  L  LD+ GT I   P  +  L++LE LNCE +SR + +SL  L      
Sbjct: 799 KIPDSLGNISCLKKLDVSGTSISHIPFTLRLLKNLEVLNCEGLSRKLCYSLFLLWSTPRN 858

Query: 67  ----SNGVLPIT---------DLNQSDCNLVDEDIPDDIKCLSLLEILDLSKNSFVRL 108
               S G+  IT          LN SDC LVD DIPDD+ CLS L  LDLS+N F  L
Sbjct: 859 NNSHSFGLWLITCLTNFSSVKVLNFSDCKLVDGDIPDDLSCLSSLHFLDLSRNLFTNL 916

The following BLAST results are available for this feature:

BLAST of CsaV3_3G032120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58588.1	4.4e-57	95.76	hypothetical protein Csa_3G695840 [Cucumis sativus]	[more]
KGN51226.1	1.4e-39	80.37	hypothetical protein Csa_5G495930 [Cucumis sativus]	[more]
KGN53797.1	4.3e-20	67.42	hypothetical protein Csa_4G130620 [Cucumis sativus]	[more]
KGN52633.1	2.0e-17	50.45	hypothetical protein Csa_5G647550 [Cucumis sativus]	[more]
XP_011656285.1	2.0e-17	50.45	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]

BLAST of CsaV3_3G032120 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36930.2	9.1e-04	33.01	Disease resistance protein (TIR-NBS-LRR class) family	[more]

BLAST of CsaV3_3G032120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q40392\|TMVRN_NICGU	2.9e-07	30.63	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]

BLAST of CsaV3_3G032120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9U0\|A0A0A0L9U0_CUCSA	2.9e-57	95.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695840 PE=4 SV=1	[more]
tr\|A0A0A0KU16\|A0A0A0KU16_CUCSA	9.5e-40	80.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G495930 PE=4 SV=1	[more]
tr\|A0A0A0KZJ1\|A0A0A0KZJ1_CUCSA	2.9e-20	67.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130620 PE=4 SV=1	[more]
tr\|A0A0A0KST1\|A0A0A0KST1_CUCSA	1.3e-17	50.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647550 PE=3 SV=1	[more]
tr\|A0A0A0KUQ5\|A0A0A0KUQ5_CUCSA	9.9e-13	44.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647510 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G032120.1	CsaV3_3G032120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 1..120 e-value: 6.5E-13 score: 49.8
None	No IPR available	PANTHER	PTHR45470	FAMILY NOT NAMED	coord: 1..118
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 6..114

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G032120	Cucumber (Chinese Long) v3	cuccucB154
CsaV3_3G032120	Silver-seed gourd	carcucB0389
CsaV3_3G032120	Silver-seed gourd	carcucB0485
CsaV3_3G032120	Silver-seed gourd	carcucB0800
CsaV3_3G032120	Silver-seed gourd	carcucB0853
CsaV3_3G032120	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G032120	Cucumber (Gy14) v2	cgybcucB328
CsaV3_3G032120	Cucumber (Gy14) v1	cgycucB180
CsaV3_3G032120	Cucumber (Gy14) v1	cgycucB378
CsaV3_3G032120	Cucurbita maxima (Rimu)	cmacucB0280
CsaV3_3G032120	Cucurbita maxima (Rimu)	cmacucB0432
CsaV3_3G032120	Cucurbita maxima (Rimu)	cmacucB0545
CsaV3_3G032120	Cucurbita maxima (Rimu)	cmacucB1052
CsaV3_3G032120	Cucurbita moschata (Rifu)	cmocucB0271
CsaV3_3G032120	Cucurbita moschata (Rifu)	cmocucB0427
CsaV3_3G032120	Cucurbita moschata (Rifu)	cmocucB0530
CsaV3_3G032120	Cucurbita moschata (Rifu)	cmocucB1034
CsaV3_3G032120	Cucurbita pepo (Zucchini)	cpecucB0158
CsaV3_3G032120	Cucurbita pepo (Zucchini)	cpecucB0387
CsaV3_3G032120	Cucurbita pepo (Zucchini)	cpecucB0684
CsaV3_3G032120	Cucurbita pepo (Zucchini)	cpecucB0748
CsaV3_3G032120	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G032120	Wild cucumber (PI 183967)	cpicucB395
CsaV3_3G032120	Bottle gourd (USVL1VR-Ls)	cuclsiB188
CsaV3_3G032120	Bottle gourd (USVL1VR-Ls)	cuclsiB200
CsaV3_3G032120	Melon (DHL92) v3.5.1	cucmeB186
CsaV3_3G032120	Melon (DHL92) v3.5.1	cucmeB205
CsaV3_3G032120	Melon (DHL92) v3.6.1	cucmedB177
CsaV3_3G032120	Melon (DHL92) v3.6.1	cucmedB198
CsaV3_3G032120	Watermelon (Charleston Gray)	cucwcgB187
CsaV3_3G032120	Watermelon (Charleston Gray)	cucwcgB195
CsaV3_3G032120	Watermelon (97103) v1	cucwmB197
CsaV3_3G032120	Watermelon (97103) v1	cucwmB203
CsaV3_3G032120	Watermelon (97103) v2	cucwmbB183
CsaV3_3G032120	Watermelon (97103) v2	cucwmbB259
CsaV3_3G032120	Watermelon (97103) v2	cucwmbB264
CsaV3_3G032120	Wax gourd	cucwgoB226
CsaV3_3G032120	Wax gourd	cucwgoB355