CsaV3_3G029880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G029880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 25643513 .. 25645261 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTCTCTGGGCACTCTCTCCCACCATTCACCCTTCCACCTTGCTTGCCTCGCCTTGCCATGAATACTCGACATTGGAGTTGCGATCACATTTGACTTTTCTCATATCAGCGCTCGTTGGTGACCGACGTTCGTGTTTTTCGCGCAACTACAGCAGGTCCGGAGCTCTTCACATGCAGTCGCAGCAGATCTGGTCATCTTTTTCACCAACTGTTTGTTTCGTCGTCGAAGGTACAAGTCTGTCGGAGCCTAGCAAAATCTTAGATCTGGCATTGCAGATCTTCGTTGTCCCAGCTCAAATCTCTACTTTTCCAACTCCAATCTCACCTCAGATCCTATCCGTTCAAAATTCCAGTCCAAATATGAGAGATTTGTCCATGTAGGTGTGAGTTCTAACTTCAGATTGCTTTAAAGAATCAACCACTCGTCCATGGGTGTAGGCAGAAAGTGAAGAAATTCCTCTTGAGGTTAGGAGTCTCAAATTTGGATGAGATCAGTTCATCATTCCAATTATTTTTCAGTCTACCGTTTGTTAGAATTCGAAGATAGAAATGGAAAACGAAAGCTACAAAATAGACAACCTGTTGTTTCCAGGTGGAAAACGTCAATGTCAACGAAAGCCTACCAATTTCGAACTCACAGCTTATTTGGCTCCTTCAAGCCATTTTGGATCTGATTCGAAGACTAGAGAATTCTTATTTTTTATAAGAAAGGAAAGTTGAAAATGGAAGGGTTGAAGTTTCTAAATACAGAACTGAAAAAGACTGAATTTTGAGATGCTTAAAAAGGCTCAAATATCTACTTTGGGTGGTTTCAAAGCTCTTTGAGTTTGATAATTGGGCAGAGATCAAGGAAATACTGAAATTGTACTTGGATTCAAATGTCATCGTTAATCCCCTATTTGCGAAAATGCTTTGGTGGATATGCATTGTGGAGCTTTGGATGAGCTCATTGTGAATCCTGGCAAATGGGAAGAGTTTGGCGCTTTTTGCTTTAAATTCAGAAAATGGAACAAATATTCCCTTAGTAGACCAATATACACTCAAAGGGTTACGGAGGATGGATTTCAACAAGAAACCTACAACTAGACTATTGGTGTAGGAAAACGTTTGAAACAATTGGAGCTCATTTTGCAGGTTTAGAAAGGATTGCAGCTGAATAACTGATGATAATAAGGGTCATAAATTTTTAAATTTGGATGATATTTCATCAATCAACCTGCCCAACAAGGTTCGTGGAGATCTTTTCATACATGATTTACCTAACTTTATAGATAGGGTTAGATTAAATCAGTCATGATTGATGAAGAAATAGTTGGTGATACATTAACCTCTGAGTTAGATTTCCTTCTCCCCACGAGATTCAATCCCAATTTTCAAAGGAATCCTTTTATCCTCACCAATAAGAAGGTTGAGCTTCAGATGCAGGAGTCTTGCTGAAATTCCAAGAAATCCAAGGAAGATTCTTTTTACGAGGAAAAATCTTGTCAAAGTCCAACATTGGACAACTTCGTTAAAGTAATCTTGCTGGAATTCACTCATCCGTTTCGTAATTCAAACGAAACAGGAGGGAGCAAAGATGAGGAAAATGAAGAAGTGCAATTAGAGGAGGAAGAGAAAAATCAGACCGTCCCACTTGTAATGCTCAAGAAAATCCCAAGAGCCTTGGCAAGCAAGACCTTGCTCGGACATCTCTCAGATTACTCCTCGTCTTCCCTCTCAATTTCTTCTTCGATTTCGTCCTCA

mRNA sequence

ATGACTACTCTCTGGGCACTCTCTCCCACCATTCACCCTTCCACCTTGCTTGCCTCGCCTTGCCATGAATACTCGACATTGGAGTTGCGATCACATTTGACTTTTCTCATATCAGCGCTCGTTGGTGACCGACGTTCGTGTTTTTCGCGCAACTACAGCAGGTCCGGAGCTCTTCACATGCAGTCGCAGCAGATCTGGTCATCTTTTTCACCAACTGTTTGTTTCGTCGTCGAAGGTACAAGTCTGTCGGAGCCTAGCAAAATCTTAGATCTGGCATTGCAGATCTTCGTTGTCCCAGCTCAAATCTCTACTTTTCCAACTCCAATCTCACCTCAGATCCTATCCGTTCAAAATTCCAGTCCAAATATGAGAGATTTGTCCATTCCAACATTGGACAACTTCGTTAAAGTAATCTTGCTGGAATTCACTCATCCGTTTCGTAATTCAAACGAAACAGGAGGGAGCAAAGATGAGGAAAATGAAGAAGTGCAATTAGAGGAGGAAGAGAAAAATCAGACCGTCCCACTTGTAATGCTCAAGAAAATCCCAAGAGCCTTGGCAAGCAAGACCTTGCTCGGACATCTCTCAGATTACTCCTCGTCTTCCCTCTCAATTTCTTCTTCGATTTCGTCCTCA

Coding sequence (CDS)

ATGACTACTCTCTGGGCACTCTCTCCCACCATTCACCCTTCCACCTTGCTTGCCTCGCCTTGCCATGAATACTCGACATTGGAGTTGCGATCACATTTGACTTTTCTCATATCAGCGCTCGTTGGTGACCGACGTTCGTGTTTTTCGCGCAACTACAGCAGGTCCGGAGCTCTTCACATGCAGTCGCAGCAGATCTGGTCATCTTTTTCACCAACTGTTTGTTTCGTCGTCGAAGGTACAAGTCTGTCGGAGCCTAGCAAAATCTTAGATCTGGCATTGCAGATCTTCGTTGTCCCAGCTCAAATCTCTACTTTTCCAACTCCAATCTCACCTCAGATCCTATCCGTTCAAAATTCCAGTCCAAATATGAGAGATTTGTCCATTCCAACATTGGACAACTTCGTTAAAGTAATCTTGCTGGAATTCACTCATCCGTTTCGTAATTCAAACGAAACAGGAGGGAGCAAAGATGAGGAAAATGAAGAAGTGCAATTAGAGGAGGAAGAGAAAAATCAGACCGTCCCACTTGTAATGCTCAAGAAAATCCCAAGAGCCTTGGCAAGCAAGACCTTGCTCGGACATCTCTCAGATTACTCCTCGTCTTCCCTCTCAATTTCTTCTTCGATTTCGTCCTCA

Protein sequence

MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHMQSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSSPNMRDLSIPTLDNFVKVILLEFTHPFRNSNETGGSKDEENEEVQLEEEEKNQTVPLVMLKKIPRALASKTLLGHLSDYSSSSLSISSSISSS
Homology
[Close]
BLAST of CsaV3_3G029880 vs. NCBI nr
Match: KGN58355.1 (hypothetical protein Csa_3G627660 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 3.3e-63
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM 60
           MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM
Sbjct: 1   MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM 60

Query: 61  QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS 120
           QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS
Sbjct: 61  QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS 120

Query: 121 PNMRDLSI 129
           PNMRDLS+
Sbjct: 121 PNMRDLSM 128

[Close]
BLAST of CsaV3_3G029880 vs. TrEMBL
Match: tr|A0A0A0L8S1|A0A0A0L8S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627660 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM 60
           MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM
Sbjct: 1   MTTLWALSPTIHPSTLLASPCHEYSTLELRSHLTFLISALVGDRRSCFSRNYSRSGALHM 60

Query: 61  QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS 120
           QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS
Sbjct: 61  QSQQIWSSFSPTVCFVVEGTSLSEPSKILDLALQIFVVPAQISTFPTPISPQILSVQNSS 120

Query: 121 PNMRDLSI 129
           PNMRDLS+
Sbjct: 121 PNMRDLSM 128

The following BLAST results are available for this feature:
BLAST of CsaV3_3G029880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58355.13.3e-6399.22hypothetical protein Csa_3G627660 [Cucumis sativus][more]
BLAST of CsaV3_3G029880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G029880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G029880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8S1|A0A0A0L8S1_CUCSA2.2e-6399.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G627660 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G029880.1CsaV3_3G029880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G029880CSPI03G27430Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G029880Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G029880Cucumber (Chinese Long) v3cuccucB159
CsaV3_3G029880Silver-seed gourdcarcucB0325
CsaV3_3G029880Silver-seed gourdcarcucB0819
CsaV3_3G029880Silver-seed gourdcarcucB1002
CsaV3_3G029880Cucumber (Gy14) v2cgybcucB117
CsaV3_3G029880Cucumber (Gy14) v2cgybcucB125
CsaV3_3G029880Cucumber (Gy14) v2cgybcucB331
CsaV3_3G029880Cucumber (Gy14) v1cgycucB079
CsaV3_3G029880Cucumber (Gy14) v1cgycucB227
CsaV3_3G029880Cucumber (Gy14) v1cgycucB386
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB0287
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB0434
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB0614
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB0716
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB0984
CsaV3_3G029880Cucurbita maxima (Rimu)cmacucB1058
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB0279
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB0429
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB0598
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB0703
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB0967
CsaV3_3G029880Cucurbita moschata (Rifu)cmocucB1040
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0160
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0297
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0307
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0383
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0755
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB0893
CsaV3_3G029880Cucurbita pepo (Zucchini)cpecucB1053
CsaV3_3G029880Wild cucumber (PI 183967)cpicucB156
CsaV3_3G029880Bottle gourd (USVL1VR-Ls)cuclsiB173
CsaV3_3G029880Bottle gourd (USVL1VR-Ls)cuclsiB196
CsaV3_3G029880Bottle gourd (USVL1VR-Ls)cuclsiB219
CsaV3_3G029880Bottle gourd (USVL1VR-Ls)cuclsiB220
CsaV3_3G029880Melon (DHL92) v3.5.1cucmeB216
CsaV3_3G029880Melon (DHL92) v3.5.1cucmeB230
CsaV3_3G029880Melon (DHL92) v3.5.1cucmeB253
CsaV3_3G029880Melon (DHL92) v3.6.1cucmedB208
CsaV3_3G029880Melon (DHL92) v3.6.1cucmedB222
CsaV3_3G029880Melon (DHL92) v3.6.1cucmedB249
CsaV3_3G029880Watermelon (Charleston Gray)cucwcgB193
CsaV3_3G029880Watermelon (Charleston Gray)cucwcgB246
CsaV3_3G029880Watermelon (Charleston Gray)cucwcgB258
CsaV3_3G029880Watermelon (97103) v1cucwmB234
CsaV3_3G029880Watermelon (97103) v1cucwmB261
CsaV3_3G029880Watermelon (97103) v1cucwmB286
CsaV3_3G029880Watermelon (97103) v2cucwmbB224
CsaV3_3G029880Watermelon (97103) v2cucwmbB230
CsaV3_3G029880Watermelon (97103) v2cucwmbB238
CsaV3_3G029880Wax gourdcucwgoB267
CsaV3_3G029880Wax gourdcucwgoB311