CsaV3_3G028300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 24775077 .. 24775442 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCCCGAGCGGAGTCCGGAGCCCTACACGAACGAGGAAGCTTTCGTTTCACGCAGCTCAGACCAAGTCACCCACCCACATCCTTTTGTTGAGTCGATCCTCTTCTGTCTCCAACCCCTTTCACCCGAGCCTTGAGTCGCGGCCCTTCAGTCACGGTCGTGAGTCGTGTCCCTTCCATTCAAACCGTGAGCCATACGCTTCTTCTACTCGAGCCTTGAGCCTCAGGCCCCTTTTGCCCTTGCTATTTTTCCTTGCTCAGAGCCGCGTCTTCTTCATACGAAGCAAAGTTGATTTTGCCATGTCAATATCTATAAAATTTTTAATATTAAAGTTAAATTCTTTAACTCCACCAATCAAATAA

mRNA sequence

ATGGCGTTCCCGAGCGGAGTCCGGAGCCCTACACGAACGAGGAAGCTTTCGTTTCACGCAGCTCAGACCAAGTCACCCACCCACATCCTTTTGTTGAGTCGATCCTCTTCTGTCTCCAACCCCTTTCACCCGAGCCTTGAGTCGCGGCCCTTCAGTCACGGTCGTGAGTCGTGTCCCTTCCATTCAAACCGTGAGCCATACGCTTCTTCTACTCGAGCCTTGAGCCTCAGGCCCCTTTTGCCCTTGCTATTTTTCCTTGCTCAGAGCCGCGTCTTCTTCATACGAAGCAAAGTTGATTTTGCCATGTCAATATCTATAAAATTTTTAATATTAAAGTTAAATTCTTTAACTCCACCAATCAAATAA

Coding sequence (CDS)

ATGGCGTTCCCGAGCGGAGTCCGGAGCCCTACACGAACGAGGAAGCTTTCGTTTCACGCAGCTCAGACCAAGTCACCCACCCACATCCTTTTGTTGAGTCGATCCTCTTCTGTCTCCAACCCCTTTCACCCGAGCCTTGAGTCGCGGCCCTTCAGTCACGGTCGTGAGTCGTGTCCCTTCCATTCAAACCGTGAGCCATACGCTTCTTCTACTCGAGCCTTGAGCCTCAGGCCCCTTTTGCCCTTGCTATTTTTCCTTGCTCAGAGCCGCGTCTTCTTCATACGAAGCAAAGTTGATTTTGCCATGTCAATATCTATAAAATTTTTAATATTAAAGTTAAATTCTTTAACTCCACCAATCAAATAA

Protein sequence

MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLESRPFSHGRESCPFHSNREPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPIK
Homology
[Close]
BLAST of CsaV3_3G028300 vs. NCBI nr
Match: KGN58296.1 (hypothetical protein Csa_3G609240 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX 60
           MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX
Sbjct: 1   MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX 60

Query: 61  XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI 120
           XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI
Sbjct: 61  XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_3G028300 vs. TrEMBL
Match: tr|A0A0A0LDX6|A0A0A0LDX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G609240 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.4e-44
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX 60
           MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX
Sbjct: 1   MAFPSGVRSPTRTRKLSFHAAQTKSPTHILLLSRSSSVSNPFHPSLXXXXXXXXXXXXXX 60

Query: 61  XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI 120
           XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI
Sbjct: 61  XXXXXPYASSTRALSLRPLLPLLFFLAQSRVFFIRSKVDFAMSISIKFLILKLNSLTPPI 120

Query: 121 K 122
           K
Sbjct: 121 K 121

The following BLAST results are available for this feature:
BLAST of CsaV3_3G028300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58296.19.7e-44100.00hypothetical protein Csa_3G609240 [Cucumis sativus][more]
BLAST of CsaV3_3G028300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G028300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G028300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDX6|A0A0A0LDX6_CUCSA6.4e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G609240 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028300.1CsaV3_3G028300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G028300Wax gourdcucwgoB311
CsaV3_3G028300Cucumber (Chinese Long) v3cuccucB077
CsaV3_3G028300Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G028300Silver-seed gourdcarcucB0267
CsaV3_3G028300Silver-seed gourdcarcucB0787
CsaV3_3G028300Silver-seed gourdcarcucB0819
CsaV3_3G028300Silver-seed gourdcarcucB1002
CsaV3_3G028300Silver-seed gourdcarcucB1125
CsaV3_3G028300Cucumber (Gy14) v2cgybcucB076
CsaV3_3G028300Cucumber (Gy14) v2cgybcucB117
CsaV3_3G028300Cucumber (Gy14) v2cgybcucB125
CsaV3_3G028300Cucumber (Gy14) v1cgycucB386
CsaV3_3G028300Cucurbita maxima (Rimu)cmacucB0287
CsaV3_3G028300Cucurbita maxima (Rimu)cmacucB0614
CsaV3_3G028300Cucurbita maxima (Rimu)cmacucB0716
CsaV3_3G028300Cucurbita maxima (Rimu)cmacucB0984
CsaV3_3G028300Cucurbita maxima (Rimu)cmacucB1058
CsaV3_3G028300Cucurbita moschata (Rifu)cmocucB0279
CsaV3_3G028300Cucurbita moschata (Rifu)cmocucB0598
CsaV3_3G028300Cucurbita moschata (Rifu)cmocucB0703
CsaV3_3G028300Cucurbita moschata (Rifu)cmocucB0967
CsaV3_3G028300Cucurbita moschata (Rifu)cmocucB1040
CsaV3_3G028300Cucurbita pepo (Zucchini)cpecucB0297
CsaV3_3G028300Cucurbita pepo (Zucchini)cpecucB0383
CsaV3_3G028300Cucurbita pepo (Zucchini)cpecucB0755
CsaV3_3G028300Cucurbita pepo (Zucchini)cpecucB0893
CsaV3_3G028300Cucurbita pepo (Zucchini)cpecucB1053
CsaV3_3G028300Wild cucumber (PI 183967)cpicucB097
CsaV3_3G028300Wild cucumber (PI 183967)cpicucB144
CsaV3_3G028300Wild cucumber (PI 183967)cpicucB156
CsaV3_3G028300Bottle gourd (USVL1VR-Ls)cuclsiB173
CsaV3_3G028300Bottle gourd (USVL1VR-Ls)cuclsiB219
CsaV3_3G028300Bottle gourd (USVL1VR-Ls)cuclsiB220
CsaV3_3G028300Melon (DHL92) v3.5.1cucmeB221
CsaV3_3G028300Melon (DHL92) v3.5.1cucmeB231
CsaV3_3G028300Melon (DHL92) v3.5.1cucmeB253
CsaV3_3G028300Melon (DHL92) v3.6.1cucmedB214
CsaV3_3G028300Melon (DHL92) v3.6.1cucmedB222
CsaV3_3G028300Melon (DHL92) v3.6.1cucmedB249
CsaV3_3G028300Watermelon (Charleston Gray)cucwcgB246
CsaV3_3G028300Watermelon (Charleston Gray)cucwcgB252
CsaV3_3G028300Watermelon (Charleston Gray)cucwcgB258
CsaV3_3G028300Watermelon (97103) v1cucwmB235
CsaV3_3G028300Watermelon (97103) v1cucwmB261
CsaV3_3G028300Watermelon (97103) v1cucwmB286
CsaV3_3G028300Watermelon (97103) v2cucwmbB224
CsaV3_3G028300Watermelon (97103) v2cucwmbB230
CsaV3_3G028300Watermelon (97103) v2cucwmbB238