CsaV3_3G028290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3 : 24761733 .. 24771886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGTAAGTCTTTGCATATATCGTAACTAAGTTGTCTTTCACTTCGACTTCGCAAGCAGATTCTCCAGATCAAGCTGTGTGTTTCTCTCATTTTTTCAGTCATGCAACCAAGTTATTCTTTGCCTTTTCCTAGTCGAGTCGCGAGCTTACCTTCACTTCTTTAAGTCGTTTGCTTTTGGAGCTATCTTTTGGGTGAACTTAACGAGTTCTTGATTTGGATTTGTTGAAGGATATGCTGAAGAATATTCCCTCTCATTGTTTATTGACCAATGTTGTGTATTTATACAAGGGTAATTACCCAAAATAACTAAGCCTACTTTATTTACATTAACATCATTACCCAAATTAACTAAGCCTAATTTATTTACATTAATACCCTCCCTCAAACTCAAGGTGGTAGAGTAGCGATCAACTTGAGTTTGGTAAGTAAGTGACAAAATCGATTAGATGGCAAGGCTTTGGTGAAGATATCCGCAGGTTGTTCAATAGTAGAAACAGAACGTAAGAGGAGGGTGTTGCTTAAGAGGTGGTGACGAACAAAGTGACAGTCATTTTCAATGTGTTTTGTACGTTCATGAAACACATCATTGTGAGCAATCTGAATGGCACTACGATTGTCACAATGGAGGAGGGTAGGACCCTGTTGAGGGACACCCATATCGGCAAGGAGCCACCGAAGCCATATAAGTTCAGCTGTAGCATCAGCCAGAGCACGATATTCAGATTCCGTACTGGAACGAGATATAACACTTTGTTTCTTACTACGCCATGAGATGAGAGAATCACCTAAGTAAAAACAGTATCCTGTAGTGGATCGTCGATCAGTAGGATCCCCCGCCCAATCAGCATCAGAATATCCCGACAACACAAGGGAAGACTGAGATGAGAATTGAAGACCATGTCCCAAGGTGCCTTTGACATAGCGAAGTATGCGTAGAACAGCAGTGAAATGAATTGTTCGAGGAGCAGCCATAAATTGACTGACAATATGAACAGCATATGCAATATCTGGGCGAGTTACTGTTAGGTATATAAGACTGCCAACAAGTTGCCGATACAAGCTTGCATCGTCAAGAGGAACACCATCAAACGGAGTTAGATGGACATGAGGATCTAACGGTGTTGAAGATGTGGTGGAGTCTGTAATTCCTGAGCGTGCTATTAGATCAGATGCATATTTCGCTTGAGATAACAGATAACCATCTGAACGGTGAGAGACTTCAAGACCGAGAAAGTAATTGAGAGATCCAAGGTCTTTCATCTCAAAATGTTGACCAAGATATTGTTGTAGGTCGGATATGGCCTGTTGATCATTACCAGTAATAATCATATCATCAACATAAAGAAGGAGAAGAACAATACCATGAGTTGTCTGTCGTGTAAAAAGGGCATTGTCGTGAGAGCTGGAGGTAAATCCAAGTTGAGTAATGGTGGAGCTAAACGTGGCAAACCAAGCTCGTGGAGCCTGTTTTAGACCGTATAGAGCGCGACGAAGGAGACACACCTTGTTGGGAGGAGGAGAAGTTCCCTGAGGTGGCTTCATATACACTTCTTCAGATAGGTTGCCGTTAAGAAATGCATTTTTGACATCCATCTGAAAAAGAGGCCACTGTTTGGCAGCAGCAACAGCTAACAAGCTGCGAACAGATGTCATCCGGGCAACAGGGGCAAATGTTTCTTCATAGTCAATCCCATATTCTTGTGAGTATCCTTTTGCAACAAGCCGAGCTTTATAACGTTCAATAGTTCCATCAGAGTGAGTTTTGATTTTGTAAATCCATTTGCAACCAATGGGTCTTTTACCGGGAGGTAAATCAACATAGTCCCAAGTGTGCGTCTTTTCAAGAGCCTGTAATTCTTCATCCATTGCTTTCTGCCATACTGGGTTAATACTGGCCTCTTGATAAGAGGTGGGTTCAACAAGGGAAACAATGGTAGAAAAACAATGGTAATCAGTGAGATGAGGGGGAGGTTCTCTTACCCGGGTAGAGCGACGAAGAGGAGTAGCAGGTGGCGATTCAGGAACATCATCGGAGACAGACGGTGGATCCAGATTTGCAGTAGCAGGTGAAGATTGTGCAAGCTCAGTATCCAAGGTGGGTTCAGAGAGAGGAAAAAGGTCAACAGATGTGTTTGTAAAGAAAGATTGAGGACTAGAGAAGGAGGTGTGGAAGGAGGACAAACGAGAGAACATAGTGTGTTCCCAAAAAGTGACATGCCGAGATATCCGGAGTCGGTTGGAAAGAGGGTCCCAACAACGAAATCCTTTGTGTTCGGTGCCATAGCCAAGGAAGCAACAGAGACGGGCACGTGGTTCAAGTTTATTGTGTTCATGAGGATGTAACAGAACGAAGCAGGCACTACCAAAAACTTTGAGTTTAGAATAGTCGGGAGAAATACCATATAGTTTTTCGAACGGAGAGGTATTTTGAAGGACAGAGGAAGGGAGACGATTGATTGTATATACTGATGTAAGGGCAGCTTCACCCCAGAATTTTTCTGGACAAGAGGCAGAAAGAAGGAGGGCACGTACTGAGTCAAGAATGTGACGATGTTTGCGCTCAGCACGTCCATTTTGTTGAGAGGTATGAGGGCAAGAGCGCTGAACAATAGTGCCCTGTTGGGAAAGAAAAGAAAGAAGGATGGAATCTTTATATTCCAAAGCATTATCAGTGCGAAGAATTTTGATGGGAGAGGAAAATTGAGTGCGAATCATGTTAGCAAACTCAATATATGTGCGAGATAATTCAGAACGATGTTTTAGAAAGTAAATCCATGTAAATCGAGAGTAGTCATCAATGAATAAAACATAGTAGCGATAACCATGAACAGTAGTAATTGGGGCAGGACCCCAAATATCAGAATGCACTAAATCAAAAGGTTTATCACAATTAGAGATGGATTGAGAAAAAGATAAGGCAGGTTGTTTAGCAAGTTTGCAATTCAAACAATTAAAAGGAACAAATTTAGTAAGATTAGTCAAATTGTTAACAGAAATTAAATGACGAAGTTTTTCAGAGGAAGCATGACCAAGACGAAGATGCCACTGATATGTGTCAGAATCAGTGACCGAAGCAGAGATGGAAGAAGGAGATGAAATCCGAAGTGATGTGAGCTCAAACAATCTTCCCACTTTGCGACCCGTTCCAATCGTCTGTCCCGTCTGCGGATCCTGAACCTGACAACCATTGGGAGAAAATGAAACATTTAAGCCCAGATCACATAATTGACCAACAGACACTAGATTAAAGGTCAGGTTAGGAACACAGTAAGTATGGGGAAGATGTACACTGGGAGTATCAATGGTACCAGTATGAGAGATGTTCATACAATTACCATCAGCAGCATAAATAGGAGGTAAAGATTTTGTAGGGCTAGAAGTAGACATAAGAGAAGAGTCAGAGGTCATATGATTACAACAGGCAGAATCAAGAAGCCATCGATTACCTGATGAAACAGCCAGAGCGGAGGATGATGAAATTAGTTGATTCAATAAGCTCTGAAGATCACTTATCTGAATGAGGGATGAATCATCCGAGGTCGCAGCAACAACAGATGAGGAACCATGTTTGGTAAAAATTTTCTCTTTTGTGGAAGTGCTAGGAGGTCGGGGTGGTCTGGTAGGGCAGTTATCCAGAATGTGGCCATGTTTATGGCAGTACCTGCACTCTATTTTAGGACAGTTACTAAATTTGTGACCAGAGAGCTTACAATTCTTACAAAACATATTTGCGGCTCTGTTGGGAGTGTATGTGCTAGCAAGGACAACATCAGATTGTTTAGTAGAGTTGATGCCAAGACGCTTTTCTTCAAACAGAATTTCTTGAATAGCTGCATCTAATGAGGGTAAGGGATTCCGGTGTAGTAAAGCAGCTCTAACAGATTCATATTCTGGACGTAATCCCATAAGGACTTTAATAAGGCGAAGATGATCTTTGCTGATGTTCGCTTGGTCAAGTTGAGTCCAAATGGGTTGAAGAACTGCCAAATATTCATTAACAGACTGACCAATATCTTGATTTAGATTTACAAGTGTACTGTGCAGTTGGTAATAATGGGCTAAACCAATAGACTTGAAGCGTGTAGACAAAAAATCCCATAATATTTTAGCATCATCAAAGGCATCAAACTGTGCATGTATAGCGGGAATAGAGGTGTTACCAAGCCAGGTGATAATTTGATGATTTTTACTGTCCCAATCTTCGAGACGTTCAATGAATGTGTTATCCCCTTCCTTTGCAGTTGGTTTGGTGATGTCGCCAGTTACAATGCGCCATAGTTTTCTTCCAATAAGAAAACTTTTCATTTGATTTGCCCATGTGATATAATTTGTACCATCAAGTATTGTAGAAATGGGTCTAAAGATATGGTCTCTCTCCATTTTGATTTGAGTTTTACTGTATTTGGCGGCTGAGATTTGCCTTGACGGAGACAGAGATTGCGCAGCAGGTCTTTACGAACGGAGAGAAAATGAATGGGCACGGCGACAGATCTAAAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGAAGAGCGGCGGCGAAGGAATGGGCGGCGATGCTTCACGAACCGACCGACGATTGCAGCGACGGATCTGGGTTGCGGAGCGGCGGCGAAGGAATGGGCACGACGACAGATCTAGAGCTCGGCTGCGGATGGAGACATCCAAGATGACGGATCTGGGTTGAAGAGCGGCGGCGAAGGAATGGGCGGCGAAGCTTGAGACAGATCGGAGCGGAACCAGCTTGAGACAGATCGGAGCGGAGATGGACACCTGAGACAGATCGAGATGTGGCGCGACTATCGGAGCTGTAAATCGGAGACGACTGGCGCTTCGCGGATGAAGACAGATCGGAGCTGCGACTAATCGGCGCGACGAGGATGACGGAGACGGTTCGAGATGTGGCGGAACAGCTGCGAGGCGCGACGAGGATGATGGAGACGATTCGGGACGCAGCTCTTCCTGGAGGTATCGAGACGATTCGGGATGGAGGCGTTCACGGGCGGCGGCGGCGACGGCGGCGGCGATTGAGATGGAGCCTCAAAACCCTAGCTCTGATACCATGTTGAAGGATATGCTGAAGAATATTCCCTCTCATTGTTTATTGACCAATGTTGTGTATTTATACAAGGGTAATTACCCAAAATAACTAAGCCTACTTTATTTACATTAACATCATTACCCAAATTAACTAAGCCTAATTTATTTACATTAATAGGATTTAAGATACACCTAACAAGAATTAATTATTAGTGTTAGTTATTGGTCATGGTTATAATTTTGTTAACGTTAGGATTAGTTTAATTAGATTTTAATTTGGATTTTTCAATTGAAGGTTAATGGGCTCAATTGGAAGAATTAAGCAAGGTTGAATTGGTTGCAACCTCAACTTTGGGTTGATTGAAGATGATTTTTGGGTCTATATTCAATCGTTAATTTTATTAAGTTATTAAATTGGTTCCTTGTATGTTTAGGATTGGGTTCATTGATTTTTGACTGTCAACCAGGATTCTAGCTAATTTTGAGGTACTACTATTAGATCTTCAAATTAAATTTTAAGAGTCGCCTGTAGTTGTGATTACGCATTGATGGTAGTTGAAAATGCATAATGAGATGTTGTAGTTGATGATTGATATTATGTTGATGATGATGACTGATATTATGTTGATGATGACGACTGATATGTTTATAATGTTATGATGCATGATATATCAATTACATGATTAAAGGTGTTGTGATTGATATTCATGTCATGTTTATGATGTTTATTATGTTACATGCCTTACTCTGGTGTGTCTGTTAACTTTTTTTGTTGAGTTTTTACCCCACATGTATTATGATTCTGTCTATGGGGTCACTTGTACGATTAGGGATGTTCCATCGGGATAACTTGCACGATTTATGGGTGTACCTATGGATCACATGCACAATTAGGGGGCAATTTTATTGTATACAAGGTCACTCACATGACTAGGGGTGTTTCAACGGGACCACTCACACGATTAAGGGTGTACCTATGTAACATATATAGATATGTTTAGGAGTGTGTATGCACGATCACTCACACGACTAGGGGTGTTTCTATGGGTCACTCACACGATTAGGAGTGTTCGTATGATCTCACTCGCTTAGGTGTGCTTTATTGGACACATGACACTATTATTATGTTTCTAAAGAAAGTTAACCGATCATATCATCTAGCAGGACTAGTAGTGGGTCTCTTATGGGTATATTTTATATACTTTCTTTTCTATGTTTAATATAAAATTTTTAGTTTCCCCATTTTCAAGAAAATTTAAAGTATTAATTGTCTTTTGAGTAATAACTTTAGTTTAGTTTGAAAGTTTAGGTCGTTACAATTAATCTGGAACGCCCCAGGCCTAGGATTTGGAATTTGGATCCCTGACATTCCCTTCCATTCAATGTGACCTGCAACATCATCCTTACTGTCTTAAAAACTTATTAGAGTGAAAGTTCTCTCCACAAACCAACATGAGTGTCCTTTCAGCATGTTTTGTCCTCACTCACATGCATCATAGAAAAATTATCAGGTCACCCAACATAGAATTGTTCTAAGCTAAGTGAGCACGCTTAAGTTTGGAGATCCTATGATCATGGAGGTCAACTAACATAGAATTGCTCCAAGCTAAACATGCCTAAATTTAGAGTTTCTATGATGAAGCCACCAAAAAGGAAGGTGCACATTGTTGGTATAGGTAGTAACTTTTAATTCTTTTAAATATTTCTTAAGATTACTTTCATGTGCTAATTTCATGTTCTTAGGATCCCTCTCATTCAAATGTGATACATGTTCATTCGTATCCCCTCTCCTAAACTCGAAGCGTTACAGTTTTAACCGATTCAATAAAGAGTTTGCTGGAAATATAAATCAAAATAAGGGGCATAACTCAATTTTGACTAGAAATTCAAACCCTCATACTTACGTTACAACCCAAAAGTCTAATCCATTGGCCACACCAGAGACAGTAGTTAATACAAATTGGCATGTTGACAATGGGGCAACGAATCATGTAACATCTGACTACTCAAACCTGTCAAATATCTCTGAATATTCAGGTATTGAAAATGTTGTTGTTGGTAATGGAAGTAAACCGCAAATTACTTGTGTGGGTAATGCAAATTTAACTCATGGGAAAAGTAGTTGAAACTAGAAAATATTTTATGTGTGTCTGACATTACAAAAAATCTAGTTAGTATGTCAAAGTTATATCAAGATAATGATGTATCTCTTGAATTTCATGGTACTTGCTATTTTGTAATGGCCAAGGATACATGTCAAATTATGTTAAAAGGAACACTTAAAGATGGCCTCTATCACCTTGAAGGTGTTGCAGTGAAGTCAGTTGGTGAGTTGGAGAACAATGAAGGTAGAAAACGACAGTTTCAACATATAAATAACAATGCATCAATATTAATGTTGTCTAAAACAACCAATAGTAGTGTTGTTGCTTCTAAAACTGTCGGACATAGGTGTGTCTAGGTCACCCATCTGTGAAAGTTTTATACTTTATAATCAAATGTTGTAATCTTCCTATTAATGACAATGAAGAACTTATTTTCTATATTCCTGTCAACTTGGAAAAGCCCATAATCTACCATTTAATGTCTCTCAAAATTGAGCAGCTAATCACTTTAATTTGGTACGCTGTGATTTATGGGGATTAGCTTCACTTCATTTGATGGTTATCGATATTAAATCCTATTTGTTGATGACTTTAACAGTTACAATCGAATCTATCCTCTTAAAAAAAGAGTGGAGCCTTTGAAGCCTTCACACATTTTCTTACATATGTGAAAACCCAGTTTTAAAAAATACTCAAACTCATATTTTGGCCGAAACAAATCCAAGTAATCACCCAAATACACCTATTTCCTTACTCATCTTATGATAACAAGGGCCAAAGCTGACATCTTCAAACTAAAAGTTCTAACTTCTACCTTCACTGTTGATTGGTCCTTCACTGAGCCAACACGAGTAAAATATGCCTTGGCTACACCATCGTGGAAGAAGGCTATGGATGATGAGTATATAGCCTTGGTAAAAAAATAAAACCTGACATCTTGTTCCACCCTCTCTCACCTTGAATGTTATTGATAACAAGTGGGTTTTTAGAATAAAAAGAATGTTGATGGTATTGTTCAAACATCTTGTTCCACCCTCTCTCACCTTGAATGTTATTGATAACAAGTGGGTTTTTAGAATAAAAAGAATGTTGATGGTATTGTTCAAAGATACAAGGCTCGTCTCATATCCAAGGGGTTTTATTAGACTCGAGGTATTGACTTCTTTGAAAATTTTGGTCCCATGGTTAAGGCTTCAACCATTTGGGTGGTTCTCAGCTTAGCCGTCTCTAAAGGTTGGCAGTTGCGACATTTAGATTTTAATAATGCCTTCCTCAATGGTCACTTAACAGAGGATGTTTATATGGCACAACCCTCTGGGTATGTTAATCCTACCTTTCATCACTATGTGTGTAAATTGGATAAAGCAATACACGGCCTCAAGCAAGCACCTCAAGGATGGAATACAACACTCACTATTGAGTTATTACAACTTGAGTTAAAAAGTTCAAGGTAAGATTCCTCCCTTTTATATTTCGAAACAACACTTCCATCATATTGTTTCTGGTTTATGTTGATGATGTGATAGTCCCTAAGAACAATTTTGTCAGGATTGGTAAACTGATAAAATCCTTTGATGCAAAATTTTTCCTAAAAGACTTGGGCCATCTACACTTATTTCCTTGGAATTCAAGTTCACCATCTTGAATTAGCGGATCTACTTTACAAGCTTCAACTTACTGGTTTAAAATCAACACCATATCTCTCCGTGTTTTTGGCAAACACTTGTCTATAAATGATGGCACACCTTTAAATGACCTGTTCATATATCGAAGTACTCTGGGAGCACACTAATATCTTACCAGCATTAGACTAAACATATAATATATTAAATCATCTAAGTCAGTTTCTGCAAAAACCAACTGGTCTTCATTGACGTGCAGTTAAACGTGTTCTGATCTATGTTAATGGCACAAATAATCACGTTAATTTATTTCAACGAAACACAAATTTGTCTATTACTGTATTCTCTGATGCATATTGGGCTTCTAATATTGATGATCTTAAGTATGTAGTTGCATACTGTGTTTTTATAGGCAACAACCTAGTTTCTTGGTCCTCTAAGAAACAAAATATTGTGGCACGATCAAGCACTGAATCTGAATATCGAGCTTTTATCTCATGTTGCATCTGAAATCAGTTTGCTCAAAGAGTTGCTCTCTAAACTTGCTAAATTTAATTGTTCTAAGCCTATTTTGTAGTATGATAACTTAATTGCAGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAAAATTACCACTCTCAATTGCCATGTCACAACATTTGAGAATATTCAATTTGTTGAGAATTAGTTGATTCAATAACTCCTCAACCAATCATTTACCAACACTTGTATTATTTACATTGGTTTATTTGTAATTATTATTATTTCTTCTTTCCCTACTCGTAGGGTTCTGCTTGTGGACGAGATTTCCTAATCTCTCTCTCA

mRNA sequence

TGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAA

Coding sequence (CDS)

TGTGCCCTACCACAACCATCATCTTCTTTCCTGTTTAACTTCACCTTGTCTGTACCACCACACAGGTTTGTCGTCATTGAAGACAATCACAAGAAGCGTTTCTGTCCGTCGAAGTCTCTGCCTAGTCTTCGTTCCTATCATGCATCCCGAGCCGGAGTGAGCCAACTTTGGAGTTCGACTGCGATGTATCTCCACTGTTGCACACTGCTGGTCGAACCACTCCCCATTCATCAAACTCCAAGCCCAGCTGCACACCGTATTCCACCCTCCGTCCAGTCGTGCTTCACGTTCGACGGGGCTCTTGCCACGAATCCGATGTTTCATGCTAGAACTAAGCATATTGAAATTCATGTTCACTTTGTGTGTGACCAAGTTCTACGTGATGTTCTTGAAGTTCAATATATACCTTCAACTGACCAATTAGTTGATAACCTCAACAAGCCTTTCACACACTCTCACTTTCAATGCTTGAGATCCAAACTCGGTATAATTCAGTTACTCTCTCATTTAAGGGGGAATATTAGAGAAAAGTGCCACATAAGCAATACACATAGCTCATCTCCAAGTCCCAAATCAATATAA

Protein sequence

CALPQPSSSFLFNFTLSVPPHRFVVIEDNHKKRFCPSKSLPSLRSYHASRAGVSQLWSSTAMYLHCCTLLVEPLPIHQTPSPAAHRIPPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSKLGIIQLLSHLRGNIREKCHISNTHSSSPSPKSI
Homology
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BLAST of CsaV3_3G028290 vs. NCBI nr
Match: XP_022154602.1 (uncharacterized protein LOC111021822 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 88  PPSVQSCFTFDGALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNK 147
           PP +       GALATNP+FHARTKHIEI VHFV D VLR  LEV+Y+PS DQL D L K
Sbjct: 171 PPIIWCDNISAGALATNPVFHARTKHIEIDVHFVRDHVLRGALEVRYVPSADQLADCLTK 230

Query: 148 PFTHSHFQCLRSKLGIIQLLSHLRGNI 175
           P  HS F  LRSKLG++ L + LRG++
Sbjct: 231 PLIHSQFHLLRSKLGVLDLPARLRGDV 257

[Close]
BLAST of CsaV3_3G028290 vs. NCBI nr
Match: PNX60893.1 (putative copia-type protein [Trifolium pratense])

HSP 1 Score: 98.2 bits (243), Expect = 3.2e-17
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA+NP+ HAR+KHIE+ VH++ D+VL + + + Y+PSTDQ+ D L KP THSHF  LRS
Sbjct: 172 ALASNPVLHARSKHIEVDVHYIXDKVLHNQVTIGYVPSTDQIADCLTKPLTHSHFSQLRS 231

Query: 160 KLGIIQLLSHLRGNIRE 177
           KLG+I   + LRG ++E
Sbjct: 232 KLGVIDTPTRLRGAVKE 248

[Close]
BLAST of CsaV3_3G028290 vs. NCBI nr
Match: PNX67992.1 (putative copia-type protein, partial [Trifolium pratense])

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALATNP+ H R+KHIE+ VH++ D+VL + + + Y+PS DQ+ D L KP THSHF  LRS
Sbjct: 162 ALATNPVLHXRSKHIEVDVHYIRDKVLHNQVTIGYVPSADQIADCLTKPLTHSHFSQLRS 221

Query: 160 KLGIIQLLSHLRGNIRE 177
           KLG+I   + LRG ++E
Sbjct: 222 KLGVIDTPTRLRGAVKE 238

[Close]
BLAST of CsaV3_3G028290 vs. NCBI nr
Match: KYP75364.1 (Copia protein [Cajanus cajan])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA+NP+ HAR+KHIE+ +HF+ DQVL++ + + Y+PS+DQ+ D L K  THS F  LR 
Sbjct: 614 ALASNPVMHARSKHIEVDIHFIRDQVLQNQISIAYVPSSDQIADCLTKALTHSRFSQLRD 673

Query: 160 KLGIIQLLSHLRGNIREK--CHI 181
           KLG++Q  + LRG +++   C+I
Sbjct: 674 KLGVVQSPTRLRGVLKDNRFCYI 696

[Close]
BLAST of CsaV3_3G028290 vs. NCBI nr
Match: KYP42619.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA NP+ HAR+KHIE+ +HF+ DQVL++ + + Y+PS+DQ+ D L K  THS F  LR 
Sbjct: 750 ALALNPVMHARSKHIEVDIHFIRDQVLQNQISIPYVPSSDQIADCLTKALTHSRFSQLRD 809

Query: 160 KLGIIQLLSHLRGNIR 176
           K+G+IQ  + LRG+++
Sbjct: 810 KIGVIQSPTRLRGDVK 825

[Close]
BLAST of CsaV3_3G028290 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-09
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 100  ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
            ++A NP  H R KHI+I  HF  +QV  +V+ ++YIP+ +QL D   KP   + F  LR 
Sbjct: 1337 SIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRD 1396

Query: 160  KLGIIQ 166
            KLG++Q
Sbjct: 1397 KLGLLQ 1402

[Close]
BLAST of CsaV3_3G028290 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.4e-09
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 101  LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
            L  NP+FH+R KHI I  HF+ +QV    L V ++ + DQL D L KP + + FQ   SK
Sbjct: 1398 LCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457

Query: 161  LGIIQL 167
            +G+ ++
Sbjct: 1458 IGVTRV 1463

[Close]
BLAST of CsaV3_3G028290 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-08
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 0 

Query: 101  LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
            L  NP+FH+R KHI +  HF+ +QV    L V ++ + DQL D L KP +   FQ    K
Sbjct: 1381 LCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRK 1440

Query: 161  LGIIQLLSHLRGNIR 176
            +G+I++     G +R
Sbjct: 1441 IGVIKVPPSCGGVLR 1455

[Close]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match: tr|A0A2K3K3M2|A0A2K3K3M2_TRIPR (Putative copia-type protein OS=Trifolium pratense OX=57577 GN=L195_g052169 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA+NP+ HAR+KHIE+ VH++ D+VL + + + Y+PSTDQ+ D L KP THSHF  LRS
Sbjct: 172 ALASNPVLHARSKHIEVDVHYIXDKVLHNQVTIGYVPSTDQIADCLTKPLTHSHFSQLRS 231

Query: 160 KLGIIQLLSHLRGNIRE 177
           KLG+I   + LRG ++E
Sbjct: 232 KLGVIDTPTRLRGAVKE 248

[Close]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match: tr|A0A2K3KNZ8|A0A2K3KNZ8_TRIPR (Putative copia-type protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g055924 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 42/77 (54.55%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALATNP+ H R+KHIE+ VH++ D+VL + + + Y+PS DQ+ D L KP THSHF  LRS
Sbjct: 162 ALATNPVLHXRSKHIEVDVHYIRDKVLHNQVTIGYVPSADQIADCLTKPLTHSHFSQLRS 221

Query: 160 KLGIIQLLSHLRGNIRE 177
           KLG+I   + LRG ++E
Sbjct: 222 KLGVIDTPTRLRGAVKE 238

[Close]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match: tr|A0A151U7U2|A0A151U7U2_CAJCA (Copia protein OS=Cajanus cajan OX=3821 GN=KK1_008090 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA+NP+ HAR+KHIE+ +HF+ DQVL++ + + Y+PS+DQ+ D L K  THS F  LR 
Sbjct: 614 ALASNPVMHARSKHIEVDIHFIRDQVLQNQISIAYVPSSDQIADCLTKALTHSRFSQLRD 673

Query: 160 KLGIIQLLSHLRGNIREK--CHI 181
           KLG++Q  + LRG +++   C+I
Sbjct: 674 KLGVVQSPTRLRGVLKDNRFCYI 696

[Close]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match: tr|A0A151RJ85|A0A151RJ85_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_035989 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 0 

Query: 100 ALATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRS 159
           ALA NP+ HAR+KHIE+ +HF+ DQVL++ + + Y+PS+DQ+ D L K  THS F  LR 
Sbjct: 750 ALALNPVMHARSKHIEVDIHFIRDQVLQNQISIPYVPSSDQIADCLTKALTHSRFSQLRD 809

Query: 160 KLGIIQLLSHLRGNIR 176
           K+G+IQ  + LRG+++
Sbjct: 810 KIGVIQSPTRLRGDVK 825

[Close]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match: tr|A0A2N9EXL7|A0A2N9EXL7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7186 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.8e-15
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0 

Query: 101 LATNPMFHARTKHIEIHVHFVCDQVLRDVLEVQYIPSTDQLVDNLNKPFTHSHFQCLRSK 160
           L++NP+FHARTKHIEI  HFV D V    L V++I STDQL D L KP + S F  LR+K
Sbjct: 123 LSSNPIFHARTKHIEIDFHFVRDMVASKALNVRFISSTDQLADLLTKPISSSRFAVLRTK 182

Query: 161 LGIIQLLSHLRGNIREKCHISNTHSSS 188
           L ++ ++  LRG +++K  I + H +S
Sbjct: 183 LNVLSIMLGLRGRVKDKPTIEDHHQTS 209

The following BLAST results are available for this feature:
BLAST of CsaV3_3G028290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154602.14.1e-2060.92uncharacterized protein LOC111021822 [Momordica charantia][more]
PNX60893.13.2e-1755.84putative copia-type protein [Trifolium pratense][more]
PNX67992.12.7e-1654.55putative copia-type protein, partial [Trifolium pratense][more]
KYP75364.12.3e-1549.40Copia protein [Cajanus cajan][more]
KYP42619.14.0e-1551.32Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
BLAST of CsaV3_3G028290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G028290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P04146|COPIA_DROME4.9e-0943.94Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
sp|Q94HW2|POLR1_ARATH6.4e-0942.42Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
sp|Q9ZT94|POLR2_ARATH1.4e-0838.67Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
BLAST of CsaV3_3G028290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3K3M2|A0A2K3K3M2_TRIPR2.1e-1755.84Putative copia-type protein OS=Trifolium pratense OX=57577 GN=L195_g052169 PE=4 ... [more]
tr|A0A2K3KNZ8|A0A2K3KNZ8_TRIPR1.8e-1654.55Putative copia-type protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g0... [more]
tr|A0A151U7U2|A0A151U7U2_CAJCA1.5e-1549.40Copia protein OS=Cajanus cajan OX=3821 GN=KK1_008090 PE=4 SV=1[more]
tr|A0A151RJ85|A0A151RJ85_CAJCA2.6e-1551.32Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
tr|A0A2N9EXL7|A0A2N9EXL7_FAGSY5.8e-1549.43Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7186 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028290.1CsaV3_3G028290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR44381FAMILY NOT NAMEDcoord: 100..166
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 100..148
e-value: 2.09037E-18
score: 76.7381

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G028290Wax gourdcucwgoB311
CsaV3_3G028290Cucumber (Chinese Long) v3cuccucB077
CsaV3_3G028290Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G028290Silver-seed gourdcarcucB0267
CsaV3_3G028290Silver-seed gourdcarcucB0787
CsaV3_3G028290Silver-seed gourdcarcucB0819
CsaV3_3G028290Silver-seed gourdcarcucB1002
CsaV3_3G028290Silver-seed gourdcarcucB1125
CsaV3_3G028290Cucumber (Gy14) v2cgybcucB076
CsaV3_3G028290Cucumber (Gy14) v2cgybcucB117
CsaV3_3G028290Cucumber (Gy14) v2cgybcucB125
CsaV3_3G028290Cucumber (Gy14) v1cgycucB386
CsaV3_3G028290Cucurbita maxima (Rimu)cmacucB0287
CsaV3_3G028290Cucurbita maxima (Rimu)cmacucB0614
CsaV3_3G028290Cucurbita maxima (Rimu)cmacucB0716
CsaV3_3G028290Cucurbita maxima (Rimu)cmacucB0984
CsaV3_3G028290Cucurbita maxima (Rimu)cmacucB1058
CsaV3_3G028290Cucurbita moschata (Rifu)cmocucB0279
CsaV3_3G028290Cucurbita moschata (Rifu)cmocucB0598
CsaV3_3G028290Cucurbita moschata (Rifu)cmocucB0703
CsaV3_3G028290Cucurbita moschata (Rifu)cmocucB0967
CsaV3_3G028290Cucurbita moschata (Rifu)cmocucB1040
CsaV3_3G028290Cucurbita pepo (Zucchini)cpecucB0297
CsaV3_3G028290Cucurbita pepo (Zucchini)cpecucB0383
CsaV3_3G028290Cucurbita pepo (Zucchini)cpecucB0755
CsaV3_3G028290Cucurbita pepo (Zucchini)cpecucB0893
CsaV3_3G028290Cucurbita pepo (Zucchini)cpecucB1053
CsaV3_3G028290Wild cucumber (PI 183967)cpicucB097
CsaV3_3G028290Wild cucumber (PI 183967)cpicucB144
CsaV3_3G028290Wild cucumber (PI 183967)cpicucB156
CsaV3_3G028290Bottle gourd (USVL1VR-Ls)cuclsiB173
CsaV3_3G028290Bottle gourd (USVL1VR-Ls)cuclsiB219
CsaV3_3G028290Bottle gourd (USVL1VR-Ls)cuclsiB220
CsaV3_3G028290Melon (DHL92) v3.5.1cucmeB221
CsaV3_3G028290Melon (DHL92) v3.5.1cucmeB231
CsaV3_3G028290Melon (DHL92) v3.5.1cucmeB253
CsaV3_3G028290Melon (DHL92) v3.6.1cucmedB214
CsaV3_3G028290Melon (DHL92) v3.6.1cucmedB222
CsaV3_3G028290Melon (DHL92) v3.6.1cucmedB249
CsaV3_3G028290Watermelon (Charleston Gray)cucwcgB246
CsaV3_3G028290Watermelon (Charleston Gray)cucwcgB252
CsaV3_3G028290Watermelon (Charleston Gray)cucwcgB258
CsaV3_3G028290Watermelon (97103) v1cucwmB235
CsaV3_3G028290Watermelon (97103) v1cucwmB261
CsaV3_3G028290Watermelon (97103) v1cucwmB286
CsaV3_3G028290Watermelon (97103) v2cucwmbB224
CsaV3_3G028290Watermelon (97103) v2cucwmbB230
CsaV3_3G028290Watermelon (97103) v2cucwmbB238