CsaV3_3G028040 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G028040
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cyclic nucleotide-gated ion channel-like protein
Location	chr3 : 24488711 .. 24489130 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTTGGGTCAAACCTGACTACAAGTAGCAGTTCATCTGAAAACATCTTTGCGGCTCTCATTACCATTATTGGGATCCTTCTAGTTGTTTATCTTATCGGCAACTTGCAGGTTTGTTAAAGATCTTCTCATCCAATATGTAAACCTTTCCTTTTCTAAGTCAGTAACAAAGAAATGACTGCATCTTTAAACAGGTATATCTGCAGTCCTCAACTTTAAGATCAGAGGAGAAACGGAGGACGATGAAAAAGAAAGATGGTGAAATAGATTTCTGGATAGATTATTATGAGTTTCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTCAATTTGAAAACACTGCTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGA

mRNA sequence

TCATTTGGGTCAAACCTGACTACAAGTAGCAGTTCATCTGAAAACATCTTTGCGGCTCTCATTACCATTATTGGGATCCTTCTAGTTGTTTATCTTATCGGCAACTTGCAGGTATATCTGCAGTCCTCAACTTTAAGATCAGAGGAGAAACGGAGGACGATGAAAAAGAAAGATGGTGAAATAGATTTCTGGATAGATTATTATGAGTTTCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTCAATTTGAAAACACTGCTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGA

Coding sequence (CDS)

TCATTTGGGTCAAACCTGACTACAAGTAGCAGTTCATCTGAAAACATCTTTGCGGCTCTCATTACCATTATTGGGATCCTTCTAGTTGTTTATCTTATCGGCAACTTGCAGGTATATCTGCAGTCCTCAACTTTAAGATCAGAGGAGAAACGGAGGACGATGAAAAAGAAAGATGGTGAAATAGATTTCTGGATAGATTATTATGAGTTTCAGAAGAAGAAGGAAATCAAGGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTCAATTTGAAAACACTGCTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGA

Protein sequence

SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGEIDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL

Homology

[Close]

BLAST of CsaV3_3G028040 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 9.5e-46
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 297 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDVE 356

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 357 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 407

[Close]

BLAST of CsaV3_3G028040 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 9.5e-46
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 190 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDVE 249

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 250 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 300

[Close]

BLAST of CsaV3_3G028040 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 4.0e-44
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLTTSS   EN FAAL+TI GILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 300 SFGSNLTTSSYVWENFFAALVTISGILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDAE 359

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY+FQKKKEIKEFVR+KFEWKNDVNL TLLDVFPSPF EEIKKEL
Sbjct: 360 IDLWIDYYKFQKKKEIKEFVREKFEWKNDVNLITLLDVFPSPFAEEIKKEL 410

[Close]

BLAST of CsaV3_3G028040 vs. NCBI nr
Match: XP_011651604.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 4.0e-44
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLTTSS   EN FAAL+TI GILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 188 SFGSNLTTSSYVWENFFAALVTISGILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDAE 247

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY+FQKKKEIKEFVR+KFEWKNDVNL TLLDVFPSPF EEIKKEL
Sbjct: 248 IDLWIDYYKFQKKKEIKEFVREKFEWKNDVNLITLLDVFPSPFAEEIKKEL 298

[Close]

BLAST of CsaV3_3G028040 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 8.3e-42
Identity = 98/111 (88.29%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGN    LQSSTLRSEEKRRTM+KKD E
Sbjct: 297 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGN----LQSSTLRSEEKRRTMQKKDVE 356

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 357 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 403

[Close]

BLAST of CsaV3_3G028040 vs. TAIR10
Match: AT2G24610.1 (cyclic nucleotide-gated channel 14)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S+G NL+TS+S  E +FA L+ I G++L   LIGN+Q YLQS T+R EE R  +K++D E
Sbjct: 363 SYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWR--LKRRDTE 422

Query: 61  IDFWIDYYEFQK--KKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +    +  ++ ++ FV+ K+     V+ +T+L   P+    +I++ L
Sbjct: 423 --EWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHL 471

[Close]

BLAST of CsaV3_3G028040 vs. TAIR10
Match: AT4G30360.1 (cyclic nucleotide-gated channel 17)

HSP 1 Score: 57.0 bits (136), Expect = 8.7e-09
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S+G NL+T+    E  FA LI I G++L  +LIGN+Q YLQS T+R EE R  +KK+D E
Sbjct: 363 SYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWR--LKKRDTE 422

Query: 61  IDFWIDYYEFQKKKEIKEFVR--DKFEW--KNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +   Q  +E++  VR  ++++W     V+ + LL   P+    +I++ L
Sbjct: 423 --EWMRHR--QLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHL 471

[Close]

BLAST of CsaV3_3G028040 vs. TAIR10
Match: AT2G46430.1 (cyclic nucleotide gated channel 3)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           + G NL TS+   E IFA +I I G++L   LIGN+Q YLQS+T+R EE R  +K++D E
Sbjct: 359 ALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMR--VKRRDAE 418

Query: 61  IDFWIDYYEF--QKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +       +K I+++ + K++    V  + LL   P    ++IK+ L
Sbjct: 419 --QWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHL 467

[Close]

BLAST of CsaV3_3G028040 vs. TAIR10
Match: AT2G46440.1 (cyclic nucleotide-gated channels)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           + G NL TS+S+ E  FA +I + G+LL   LIGN+Q YLQSST R +E    M++K  +
Sbjct: 317 ALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDE----MEEKKRD 376

Query: 61  IDFWIDYYEFQK--KKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
            + W+ Y E  +  K+ I+ F   K+        + LL   P     E K+ L
Sbjct: 377 TEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYL 425

[Close]

BLAST of CsaV3_3G028040 vs. TAIR10
Match: AT2G28260.1 (cyclic nucleotide-gated channel 15)

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S G NL TS+ + E +FA +I  +G++L   LIGN+Q YLQS+T+R EE R  +++ D E
Sbjct: 353 SLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWR--IRRTDTE 412

Query: 61  IDFWIDYYEFQKKKEIKEFVR--DKFEW--KNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+  +  Q   E+++ VR  D+++W     V+ + LL   P     +IK+ L
Sbjct: 413 --QWM--HHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHL 461

[Close]

BLAST of CsaV3_3G028040 vs. Swiss-Prot
Match: sp|Q9SJA4|CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana OX=3702 GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08
Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S+G NL+TS+S  E +FA L+ I G++L   LIGN+Q YLQS T+R EE R  +K++D E
Sbjct: 363 SYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWR--LKRRDTE 422

Query: 61  IDFWIDYYEFQK--KKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +    +  ++ ++ FV+ K+     V+ +T+L   P+    +I++ L
Sbjct: 423 --EWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHL 471

[Close]

BLAST of CsaV3_3G028040 vs. Swiss-Prot
Match: sp|Q8L7Z0|CNG17_ARATH (Cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana OX=3702 GN=CNGC17 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S+G NL+T+    E  FA LI I G++L  +LIGN+Q YLQS T+R EE R  +KK+D E
Sbjct: 363 SYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWR--LKKRDTE 422

Query: 61  IDFWIDYYEFQKKKEIKEFVR--DKFEW--KNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +   Q  +E++  VR  ++++W     V+ + LL   P+    +I++ L
Sbjct: 423 --EWMRHR--QLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHL 471

[Close]

BLAST of CsaV3_3G028040 vs. Swiss-Prot
Match: sp|Q9SKD7|CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana OX=3702 GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           + G NL TS+   E IFA +I I G++L   LIGN+Q YLQS+T+R EE R  +K++D E
Sbjct: 359 ALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMR--VKRRDAE 418

Query: 61  IDFWIDYYEF--QKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+ +       +K I+++ + K++    V  + LL   P    ++IK+ L
Sbjct: 419 --QWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHL 467

[Close]

BLAST of CsaV3_3G028040 vs. Swiss-Prot
Match: sp|Q9SKD6|CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana OX=3702 GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-07
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           + G NL TS+S+ E  FA +I + G+LL   LIGN+Q YLQSST R +E    M++K  +
Sbjct: 317 ALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDE----MEEKKRD 376

Query: 61  IDFWIDYYEFQK--KKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
            + W+ Y E  +  K+ I+ F   K+        + LL   P     E K+ L
Sbjct: 377 TEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYL 425

[Close]

BLAST of CsaV3_3G028040 vs. Swiss-Prot
Match: sp|Q9SL29|CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana OX=3702 GN=CNGC15 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S G NL TS+ + E +FA +I  +G++L   LIGN+Q YLQS+T+R EE R  +++ D E
Sbjct: 353 SLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWR--IRRTDTE 412

Query: 61  IDFWIDYYEFQKKKEIKEFVR--DKFEW--KNDVNLKTLLDVFPSPFVEEIKKEL 112
              W+  +  Q   E+++ VR  D+++W     V+ + LL   P     +IK+ L
Sbjct: 413 --QWM--HHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHL 461

[Close]

BLAST of CsaV3_3G028040 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-46
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 190 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDVE 249

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 250 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 300

[Close]

BLAST of CsaV3_3G028040 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-46
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGNLQVYLQSSTLRSEEKRRTM+KKD E
Sbjct: 297 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGNLQVYLQSSTLRSEEKRRTMQKKDVE 356

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 357 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 407

[Close]

BLAST of CsaV3_3G028040 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.5e-42
Identity = 98/111 (88.29%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLT SS SSENIFAALITI+ ILLVVYLIGN    LQSSTLRSEEKRRTM+KKD E
Sbjct: 297 SFGSNLTPSSHSSENIFAALITIVEILLVVYLIGN----LQSSTLRSEEKRRTMQKKDVE 356

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           ID WIDYY FQKKKEIKEFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 357 IDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKEL 403

[Close]

BLAST of CsaV3_3G028040 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 69/111 (62.16%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           SFGSNLTTSS + ENIFAAL++I GILLVVYLIGNL                        
Sbjct: 167 SFGSNLTTSSYACENIFAALVSIAGILLVVYLIGNL------------------------ 226

Query: 61  IDFWIDYYEFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
                     QKKKEIKEFVRDKF WKNDVNLKTLLDVF SPFVEEIKKEL
Sbjct: 227 ----------QKKKEIKEFVRDKFGWKNDVNLKTLLDVFSSPFVEEIKKEL 243

[Close]

BLAST of CsaV3_3G028040 vs. TrEMBL
Match: tr|A0A2P6SP51|A0A2P6SP51_ROSCH (Putative Ion transport domain, transcription regulator, NtcA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0381221 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 1   SFGSNLTTSSSSSENIFAALITIIGILLVVYLIGNLQVYLQSSTLRSEEKRRTMKKKDGE 60
           S G NL TS+ + EN+FA  I+IIG+LL +YLIGNLQ YLQ +T RSE+ RR MK K  E
Sbjct: 355 SLGQNLHTSTYAWENLFAVFISIIGLLLFIYLIGNLQTYLQFATTRSEKIRRKMKTKKLE 414

Query: 61  IDFWIDYYEFQK------KKEIKEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKEL 112
           +D W+    F+K      K+ I +F++ K E  NDV ++ +L V PS   + IK+ L
Sbjct: 415 VDLWL----FRKGLPSNLKEVIMQFIQKKLEQNNDVQVENILSVLPSAHSKYIKRYL 467

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449547.1	9.5e-46	91.89	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
XP_016900694.1	9.5e-46	91.89	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
XP_011651603.1	4.0e-44	88.29	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu...	[more]
XP_011651604.1	4.0e-44	88.29	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis sativu...	[more]
XP_016900693.1	8.3e-42	88.29	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_3G028040 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24610.1	1.3e-09	36.28	cyclic nucleotide-gated channel 14	[more]
AT4G30360.1	8.7e-09	37.39	cyclic nucleotide-gated channel 17	[more]
AT2G46430.1	1.1e-08	36.28	cyclic nucleotide gated channel 3	[more]
AT2G46440.1	1.9e-08	36.28	cyclic nucleotide-gated channels	[more]
AT2G28260.1	7.3e-08	36.52	cyclic nucleotide-gated channel 15	[more]

BLAST of CsaV3_3G028040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SJA4\|CNG14_ARATH	2.4e-08	36.28	Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8L7Z0\|CNG17_ARATH	1.6e-07	37.39	Cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana OX=3702 GN=CNGC17...	[more]
sp\|Q9SKD7\|CNGC3_ARATH	2.0e-07	36.28	Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9SKD6\|CNG11_ARATH	3.5e-07	36.28	Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana OX=3702 GN=CNGC11...	[more]
sp\|Q9SL29\|CNG15_ARATH	1.3e-06	36.52	Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsaV3_3G028040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYA3\|A0A1S4DYA3_CUCME	6.3e-46	91.89	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S3BLM4\|A0A1S3BLM4_CUCME	6.3e-46	91.89	cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A1S4DXJ0\|A0A1S4DXJ0_CUCME	5.5e-42	88.29	cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LBE9\|A0A0A0LBE9_CUCSA	1.1e-21	62.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1	[more]
tr\|A0A2P6SP51\|A0A2P6SP51_ROSCH	2.6e-15	47.01	Putative Ion transport domain, transcription regulator, NtcA OS=Rosa chinensis O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028040.1	CsaV3_3G028040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10217:SF622	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED	coord: 1..110
None	No IPR available	PANTHER	PTHR10217	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	coord: 1..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G028040	MELO3C030047.2	Melon (DHL92) v3.6.1	cucmedB196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G028040	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G028040	Cucurbita maxima (Rimu)	cmacucB0378
CsaV3_3G028040	Cucurbita maxima (Rimu)	cmacucB0492
CsaV3_3G028040	Cucurbita moschata (Rifu)	cmocucB0481
CsaV3_3G028040	Cucurbita pepo (Zucchini)	cpecucB0038
CsaV3_3G028040	Cucurbita pepo (Zucchini)	cpecucB0253
CsaV3_3G028040	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G028040	Bottle gourd (USVL1VR-Ls)	cuclsiB238
CsaV3_3G028040	Watermelon (Charleston Gray)	cucwcgB247
CsaV3_3G028040	Watermelon (97103) v1	cucwmB263
CsaV3_3G028040	Silver-seed gourd	carcucB1031