CsaV3_3G028030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G028030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptioncyclic nucleotide-gated ion channel 1-like
Locationchr3 : 24488266 .. 24488629 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCATTCGCAGGTTCCAATGCTTAAAGAATTTGAAGAGGAGAAGTTAGAAGAGGTGATGAAGGATATGAAGCCAATGGTTTTTGCAGAGTATAGCTATATTATTCGAGAGGGGGAGCGTGTTGAGCAGATGCTACTATTCACGAAAGGTATGGGATTGAAATTTAGCAAGAGCACTGGAGCTAGAACAACGATTAGCACTTTTGGAAAAGGTGATTTATTTGGGGAGCAGCTACTGATTTGGGCAGTGGAAAATCTTCATGTGTCTGAAATTCCTTTGTTCGAATGTACACTCAAGACACAGACCCAAATGGAAGCCTTCACTCTTAAGGCTATTGATCCACAATATCATATCATACCAA

mRNA sequence

ATGTTTCATTCGCAGGTTCCAATGCTTAAAGAATTTGAAGAGGAGAAGTTAGAAGAGGTGATGAAGGATATGAAGCCAATGGTTTTTGCAGAGTATAGCTATATTATTCGAGAGGGGGAGCGTGTTGAGCAGATGCTACTATTCACGAAAGGTATGGGATTGAAATTTAGCAAGAGCACTGGAGCTAGAACAACGATTAGCACTTTTGGAAAAGGTGATTTATTTGGGGAGCAGCTACTGATTTGGGCAGTGGAAAATCTTCATGTGTCTGAAATTCCTTTGTTCGAATGTACACTCAAGACACAGACCCAAATGGAAGCCTTCACTCTTAAGGCTATTGATCCACAATATCATATCATACCAA

Coding sequence (CDS)

ATGTTTCATTCGCAGGTTCCAATGCTTAAAGAATTTGAAGAGGAGAAGTTAGAAGAGGTGATGAAGGATATGAAGCCAATGGTTTTTGCAGAGTATAGCTATATTATTCGAGAGGGGGAGCGTGTTGAGCAGATGCTACTATTCACGAAAGGTATGGGATTGAAATTTAGCAAGAGCACTGGAGCTAGAACAACGATTAGCACTTTTGGAAAAGGTGATTTATTTGGGGAGCAGCTACTGATTTGGGCAGTGGAAAATCTTCATGTGTCTGAAATTCCTTTGTTCGAATGTACACTCAAGACACAGACCCAAATGGAAGCCTTCACTCTTAAGGCTATTGATCCACAATATCATATCATACCAA

Protein sequence

MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYHIIPX
Homology
[Close]
BLAST of CsaV3_3G028030 vs. NCBI nr
Match: XP_011652817.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 8.7e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKST 60
           MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKST
Sbjct: 1   MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKST 60

Query: 61  GARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYHII 120
           GARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYHII
Sbjct: 61  GARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYHII 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]
BLAST of CsaV3_3G028030 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 414 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 473

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 474 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 527

[Close]
BLAST of CsaV3_3G028030 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 410 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 469

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 470 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 523

[Close]
BLAST of CsaV3_3G028030 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 307 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 366

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 367 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 420

[Close]
BLAST of CsaV3_3G028030 vs. NCBI nr
Match: XP_011651603.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42
Identity = 91/114 (79.82%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VPMLKEFEEEKLEE+MKDMKP++FAE SYIIREGE +E MLLFTKGM L FSK T  RT
Sbjct: 417 RVPMLKEFEEEKLEEMMKDMKPIIFAEQSYIIREGEPIEHMLLFTKGMALTFSKRTRTRT 476

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+T GKGDLFGEQLL WA  +L VSEIPL +CTLKTQTQMEAF LKAIDPQYH
Sbjct: 477 TINTLGKGDLFGEQLLNWAAGSLPVSEIPLSKCTLKTQTQMEAFALKAIDPQYH 530

[Close]
BLAST of CsaV3_3G028030 vs. TAIR10
Match: AT1G15990.1 (cyclic nucleotide gated channel 7)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+    +E  L+ + + +KP +F E +YI+REG+ V +M+   +G  L+   + G R+
Sbjct: 470 RVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGR-LESVTTDGGRS 529

Query: 65  TISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                G   +GD  GE+LL WA++    S +P    T+K  T++EAF L+A
Sbjct: 530 GFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEA 579

[Close]
BLAST of CsaV3_3G028030 vs. TAIR10
Match: AT1G19780.1 (cyclic nucleotide gated channel 8)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+    +E  L+ + + +KP ++ E +YI+REG+ V +ML   +G  L+   + G R+
Sbjct: 505 RVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGR-LESVTTDGGRS 564

Query: 65  TISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                G   +GD  GE+LL WA++    S +P    T+K  T++EAF L+A
Sbjct: 565 GFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEA 614

[Close]
BLAST of CsaV3_3G028030 vs. TAIR10
Match: AT2G23980.1 (cyclic nucleotide-gated channel 6)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+ +  +E  L+ + + +KP +F E SY++REG+ V +ML   +G  L+   + G R+
Sbjct: 511 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGR-LESVTTDGGRS 570

Query: 65  TI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                S   +GD  G++LL WA++    S +P    T+K  T++EAF L A
Sbjct: 571 GFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIA 620

[Close]
BLAST of CsaV3_3G028030 vs. TAIR10
Match: AT4G01010.1 (cyclic nucleotide-gated channel 13)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+ +  +E+ L+ V   +KP+++ E SY IREG+ VE+ML   +G  L  + + G RT
Sbjct: 471 KVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGK-LMSATTNGGRT 530

Query: 65  TIST---FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAID 115
                      D  GE LL WA++    S  P+   T++  T++EAF L A D
Sbjct: 531 GFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADD 582

[Close]
BLAST of CsaV3_3G028030 vs. TAIR10
Match: AT4G30560.1 (cyclic nucleotide gated channel 9)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+ +  +E  L+ + + +KP ++ E SY++REG+ V +ML   +G  L+   + G R+
Sbjct: 510 RVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGR-LESVTTDGGRS 569

Query: 65  TI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                S   +GD  GE+LL WA++    S +P    T K  T++EAF L A
Sbjct: 570 GFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIA 619

[Close]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match: sp|Q9S9N5|CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana OX=3702 GN=CNGC7 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+    +E  L+ + + +KP +F E +YI+REG+ V +M+   +G  L+   + G R+
Sbjct: 499 RVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGR-LESVTTDGGRS 558

Query: 65  TISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                G   +GD  GE+LL WA++    S +P    T+K  T++EAF L+A
Sbjct: 559 GFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEA 608

[Close]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match: sp|O82226|CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+ +  +E  L+ + + +KP +F E SY++REG+ V +ML   +G  L+   + G R+
Sbjct: 511 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGR-LESVTTDGGRS 570

Query: 65  TI---STFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                S   +GD  G++LL WA++    S +P    T+K  T++EAF L A
Sbjct: 571 GFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIA 620

[Close]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match: sp|Q9FXH6|CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana OX=3702 GN=CNGC8 PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+    +E  L+ + + +KP ++ E +YI+REG+ V +ML   +G  L+   + G R+
Sbjct: 505 RVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGR-LESVTTDGGRS 564

Query: 65  TISTFG---KGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKA 113
                G   +GD  GE+LL WA++    S +P    T+K  T++EAF L+A
Sbjct: 565 GFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEA 614

[Close]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match: sp|Q9LD40|CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VP+ +  +E+ L+ V   +KP+++ E SY IREG+ VE+ML   +G  L  + + G RT
Sbjct: 471 KVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGK-LMSATTNGGRT 530

Query: 65  TIST---FGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAID 115
                      D  GE LL WA++    S  P+   T++  T++EAF L A D
Sbjct: 531 GFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADD 582

[Close]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match: sp|O65717|CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-10
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 24  MKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGARTTIST--FGKGDLFGEQLLI 83
           ++P+++ E SYI+REG+ V++ML   +G  L  + + G    +++   G GD  GE+LL 
Sbjct: 502 LQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLT 561

Query: 84  WAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQY 118
           WA++    S +P+   T++   ++EAF LKA D ++
Sbjct: 562 WALDPHSSSNLPISTRTVRALMEVEAFALKADDLKF 597

[Close]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match: tr|A0A1S4DYA3|A0A1S4DYA3_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.9e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 307 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 366

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 367 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 420

[Close]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match: tr|A0A1S3BLM4|A0A1S3BLM4_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.9e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 414 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 473

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 474 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 527

[Close]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match: tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME (cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.9e-44
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +V MLKEFEEEKL+E+MKDMKPMVF E SYIIREGE VEQMLLFTKGMGL FSKSTG RT
Sbjct: 410 RVLMLKEFEEEKLKEMMKDMKPMVFGEQSYIIREGEPVEQMLLFTKGMGLTFSKSTGTRT 469

Query: 65  TISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAIDPQYH 119
           TI+ FGKGDLFGEQLL WA ENL VSEIPL +CTLK  TQMEAF LKAIDPQYH
Sbjct: 470 TINAFGKGDLFGEQLLKWAAENLPVSEIPLSKCTLKAHTQMEAFALKAIDPQYH 523

[Close]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match: tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 5   QVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKSTGART 64
           +VPMLKEFEEEKLEE+MKDMK M+FAE++YII+EGE VEQMLLFTKGMGLKFSKS GART
Sbjct: 250 RVPMLKEFEEEKLEEMMKDMKLMIFAEHNYIIQEGELVEQMLLFTKGMGLKFSKSIGART 309

Query: 65  TISTFGKGDLFGEQLLI 82
           TISTFGKGDLFGEQLLI
Sbjct: 310 TISTFGKGDLFGEQLLI 326

[Close]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match: tr|W9RVZ2|W9RVZ2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002698 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 0 

Query: 1   MFHSQVPMLKEFEEEKLEEVMKDMKPMVFAEYSYIIREGERVEQMLLFTKGMGLKFSKST 60
           ++ SQVP L+  +EE   E++K +KP+++AE SYIIREGE +  ML  T+G+   F    
Sbjct: 607 VYVSQVPELQNVDEEVHGEIIKHLKPVIYAENSYIIREGEPISHMLFVTQGLVWVF---- 666

Query: 61  GARTTISTFGKGDLFGEQLLIWAVENLHVSEIPLFECTLKTQTQMEAFTLKAID 115
           G  + +    KGD +GEQLL W + +   +E+P+    +++ T +EA TLKA+D
Sbjct: 667 GNGSIMKIVAKGDYYGEQLLEWQLSSASYTEVPISTKNVQSHTNVEALTLKAVD 716

The following BLAST results are available for this feature:
BLAST of CsaV3_3G028030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652817.18.7e-61100.00PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus][more]
XP_008449547.14.4e-4483.33PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo][more]
XP_016900693.14.4e-4483.33PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo][more]
XP_016900694.14.4e-4483.33PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ... [more]
XP_011651603.12.4e-4279.82PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis sativu... [more]
BLAST of CsaV3_3G028030 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15990.11.2e-1134.23cyclic nucleotide gated channel 7[more]
AT1G19780.11.6e-1134.23cyclic nucleotide gated channel 8[more]
AT2G23980.11.6e-1134.23cyclic nucleotide-gated channel 6[more]
AT4G01010.12.0e-1135.40cyclic nucleotide-gated channel 13[more]
AT4G30560.12.7e-1134.23cyclic nucleotide gated channel 9[more]
BLAST of CsaV3_3G028030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S9N5|CNGC7_ARATH2.1e-1034.23Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|O82226|CNGC6_ARATH2.8e-1034.23Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9FXH6|CNGC8_ARATH2.8e-1034.23Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9LD40|CNG13_ARATH3.7e-1035.40Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|O65717|CNGC1_ARATH4.8e-1034.38Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P... [more]
BLAST of CsaV3_3G028030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DYA3|A0A1S4DYA3_CUCME2.9e-4483.33cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S3BLM4|A0A1S3BLM4_CUCME2.9e-4483.33cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4DXJ0|A0A1S4DXJ0_CUCME2.9e-4483.33cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0LBE9|A0A0A0LBE9_CUCSA3.8e-2888.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G606870 PE=4 SV=1[more]
tr|W9RVZ2|W9RVZ2_9ROSA1.4e-1440.35Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002698 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G028030.1CsaV3_3G028030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3DG3DSA:2.60.120.10coord: 6..119
e-value: 2.1E-22
score: 81.2
NoneNo IPR availablePANTHERPTHR10217:SF501CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2coord: 5..117
NoneNo IPR availablePANTHERPTHR10217VOLTAGE AND LIGAND GATED POTASSIUM CHANNELcoord: 5..117
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 8..81
score: 14.424
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILYSSF51206cAMP-binding domain-likecoord: 4..112

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G028030CsGy3G024810Cucumber (Gy14) v2cgybcucB117
CsaV3_3G028030Bhi01G001089Wax gourdcucwgoB297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G028030Silver-seed gourdcarcucB1031
CsaV3_3G028030Cucurbita maxima (Rimu)cmacucB0378
CsaV3_3G028030Cucurbita maxima (Rimu)cmacucB0492
CsaV3_3G028030Cucurbita moschata (Rifu)cmocucB0481
CsaV3_3G028030Cucurbita pepo (Zucchini)cpecucB0038
CsaV3_3G028030Cucurbita pepo (Zucchini)cpecucB0253
CsaV3_3G028030Wild cucumber (PI 183967)cpicucB144
CsaV3_3G028030Bottle gourd (USVL1VR-Ls)cuclsiB238
CsaV3_3G028030Melon (DHL92) v3.6.1cucmedB196
CsaV3_3G028030Watermelon (Charleston Gray)cucwcgB247
CsaV3_3G028030Watermelon (97103) v1cucwmB263