CsaV3_3G027990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G027990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 24450409 .. 24450761 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAACATGCGCGTTTGGATTGTAAGAAAGAATTTGCAGACAAAGAGACGAAGGACGTTGTCCATCTTATTCTAAGTAATTGATACGTTTACTAACATTTTTTGCATTGTTGCGCAACTAATAATTTCCATTTTTCCTACTTTGTTAGGACGAACTATTATCCAATCAGAAGGCGCGTGATTTATCAGGTGGTGACAATGTACTAACCCAAGCATTGAGTCAGAAAGATCGATCGAGAATAGTTCGGAGAGTGGGAAAGTACGTCACGAAGAAAAAGTATTTCCACACCCCGACGGCTTCAAAATCGAAACAAAGTAATGAGAAGAAGACAGTGTATGTGACAACATGA

mRNA sequence

ATGTGGAAACATGCGCGTTTGGATTGTAAGAAAGAATTTGCAGACAAAGAGACGAAGGACGTTGACGAACTATTATCCAATCAGAAGGCGCGTGATTTATCAGGTGGTGACAATGTACTAACCCAAGCATTGAGTCAGAAAGATCGATCGAGAATAGTTCGGAGAGTGGGAAAGTACGTCACGAAGAAAAAGTATTTCCACACCCCGACGGCTTCAAAATCGAAACAAAGTAATGAGAAGAAGACAGTGTATGTGACAACATGA

Coding sequence (CDS)

ATGTGGAAACATGCGCGTTTGGATTGTAAGAAAGAATTTGCAGACAAAGAGACGAAGGACGTTGACGAACTATTATCCAATCAGAAGGCGCGTGATTTATCAGGTGGTGACAATGTACTAACCCAAGCATTGAGTCAGAAAGATCGATCGAGAATAGTTCGGAGAGTGGGAAAGTACGTCACGAAGAAAAAGTATTTCCACACCCCGACGGCTTCAAAATCGAAACAAAGTAATGAGAAGAAGACAGTGTATGTGACAACATGA

Protein sequence

MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYVTKKKYFHTPTASKSKQSNEKKTVYVTT

Homology

[Close]

BLAST of CsaV3_3G027990 vs. NCBI nr
Match: KGN58276.1 (hypothetical protein Csa_3G604120 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV 60
          MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV
Sbjct: 1  MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV 60

Query: 61 TKKKYFHTPTASKSKQSNEKKTVYVTT 88
          TKKKYFHTPTASKSKQSNEKKTVYVTT
Sbjct: 61 TKKKYFHTPTASKSKQSNEKKTVYVTT 87

[Close]

BLAST of CsaV3_3G027990 vs. NCBI nr
Match: XP_011653325.1 (PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP_011653326.1 PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP_011653327.1 PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 38/73 (52.05%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MWKHARLDCKKEFADKETKDV----DELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRV 60
           +WKHA LD K EF DKE KDV    D LL NQK R L G D+VL QAL  KDR  I  R 
Sbjct: 183 VWKHAHLDHKGEFPDKEMKDVANVIDNLLGNQKTRSLYGSDDVLNQALGVKDRLGITLRR 242

Query: 61  GKYVTKKKYFHTP 70
           G+    +K    P
Sbjct: 243 GEVRDYEKNIFIP 255

[Close]

BLAST of CsaV3_3G027990 vs. NCBI nr
Match: XP_011653328.1 (PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 38/73 (52.05%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MWKHARLDCKKEFADKETKDV----DELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRV 60
           +WKHA LD K EF DKE KDV    D LL NQK R L G D+VL QAL  KDR  I  R 
Sbjct: 146 VWKHAHLDHKGEFPDKEMKDVANVIDNLLGNQKTRSLYGSDDVLNQALGVKDRLGITLRR 205

Query: 61  GKYVTKKKYFHTP 70
           G+    +K    P
Sbjct: 206 GEVRDYEKNIFIP 218

[Close]

BLAST of CsaV3_3G027990 vs. NCBI nr
Match: KGN65312.1 (hypothetical protein Csa_1G319810 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   MWKHARLDCKKEFADKETKDV----DELLSNQKARDLSGGDNVLTQA 44
           +WKHA  D K EF DKET DV    D+L+ NQK R LS GD+VLTQA
Sbjct: 84  VWKHASFDRKGEFPDKETMDVANLIDDLMGNQKGRSLSDGDDVLTQA 130

[Close]

BLAST of CsaV3_3G027990 vs. TrEMBL
Match: tr|A0A0A0LDV4|A0A0A0LDV4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G604120 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV 60
          MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV
Sbjct: 1  MWKHARLDCKKEFADKETKDVDELLSNQKARDLSGGDNVLTQALSQKDRSRIVRRVGKYV 60

Query: 61 TKKKYFHTPTASKSKQSNEKKTVYVTT 88
          TKKKYFHTPTASKSKQSNEKKTVYVTT
Sbjct: 61 TKKKYFHTPTASKSKQSNEKKTVYVTT 87

[Close]

BLAST of CsaV3_3G027990 vs. TrEMBL
Match: tr|A0A0A0LWT3|A0A0A0LWT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G319810 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-05
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   MWKHARLDCKKEFADKETKDV----DELLSNQKARDLSGGDNVLTQA 44
           +WKHA  D K EF DKET DV    D+L+ NQK R LS GD+VLTQA
Sbjct: 84  VWKHASFDRKGEFPDKETMDVANLIDDLMGNQKGRSLSDGDDVLTQA 130

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58276.1	1.8e-39	100.00	hypothetical protein Csa_3G604120 [Cucumis sativus]	[more]
XP_011653325.1	2.0e-06	52.05	PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus] >XP...	[more]
XP_011653328.1	2.0e-06	52.05	PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus]	[more]
KGN65312.1	1.4e-04	61.70	hypothetical protein Csa_1G319810 [Cucumis sativus]	[more]

BLAST of CsaV3_3G027990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDV4\|A0A0A0LDV4_CUCSA	1.2e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G604120 PE=4 SV=1	[more]
tr\|A0A0A0LWT3\|A0A0A0LWT3_CUCSA	9.4e-05	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G319810 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G027990.1	CsaV3_3G027990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G027990	Watermelon (97103) v2	cucwmbB226
CsaV3_3G027990	Wax gourd	cucwgoB297
CsaV3_3G027990	Silver-seed gourd	carcucB1031
CsaV3_3G027990	Cucumber (Gy14) v1	cgycucB016
CsaV3_3G027990	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G027990	Cucurbita maxima (Rimu)	cmacucB0378
CsaV3_3G027990	Cucurbita maxima (Rimu)	cmacucB0492
CsaV3_3G027990	Cucurbita moschata (Rifu)	cmocucB0481
CsaV3_3G027990	Cucurbita pepo (Zucchini)	cpecucB0038
CsaV3_3G027990	Cucurbita pepo (Zucchini)	cpecucB0253
CsaV3_3G027990	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G027990	Bottle gourd (USVL1VR-Ls)	cuclsiB238
CsaV3_3G027990	Melon (DHL92) v3.6.1	cucmedB196
CsaV3_3G027990	Watermelon (Charleston Gray)	cucwcgB247
CsaV3_3G027990	Watermelon (97103) v1	cucwmB263