CsaV3_3G027960 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G027960
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr3 : 24419153 .. 24421809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGCTGGGGAAGCTATTGATTTGTTTTTGGAAATGATATTAAGTGGATATGAACCTGATAGATTCACATTAAGTGGTGTAATATCCGCTTGTGCAAATATGGAATTGTTATTGCTAGGGCAGCAGTTGCATTCTCAAGCAATAAGACACGGGTTGACTCTGGATCGATGTGTGGGTTGTTGTCTAATAAATATGTATGCTAAATGCTCTGTGGATGGATCAATGTGTGCAGCAAGGAAGATTTTTGATCAGATTCTGGATCATAATGTCTTCTCTTGGACTGCAATGATCACAGGATATGTTCAAAAAGGGGGATATGATGAAGAAGCTCTCGATCTTTTTCGTGGAATGATCTTGACCCATGTTATACCAAACCATTTTACGTTTTCCAGCACTTTGAAGGCCTGTGCAAATCTAGCTGCTCTACGGATTGGAGAACAGGTTTTTACTCATGCAGTAAAGCTCGGTTTTTCATCAGTTAATTGTGTTGCAAACTCACTTATTAGCATGTATGCACGATCTGGCAGAATTGATGATGCACGGAAAGCATTTGATATTCTGTTTGAGAAGAATTTGATTTCTTATAACACGGTAATTGATGCATATGCTAAGAACTTAAATTCTGAGGAAGCTTTAGAACTTTTCAATGAGATTGAGGATCAAGGGATGGGGGCCAGTGCTTTTACGTTCGCTAGCCTTCTGAGTGGAGCTGCCAGCATCGGTACAATAGGCAAGGGCGAGCAAATTCATGCTCGGGTGATAAAGTCAGGGTTGAAATTGAATCAGTCTGTGTGCAATGCTTTAATCTCCATGTATTCTAGGTGTGGAAATATTGAATCTGCTTTCCAAGTTTTTGAAGACATGGAAGACAGAAATGTCATCTCTTGGACTTCAATTATCACAGGTTTTGCAAAACATGGGTTCGCAACACAAGCCTTGGAACTGTTCCACAAGATGCTCGAGGAAGGTGTTAGACCAAATTTGGTTACCTACATTGCTGTTTTATCAGCTTGTAGCCACGTTGGTCTTGTTAACGAGGGTTGGAAACACTTCAAATCAATGTATACAGAGCATGGAGTCATTCCGAGGATGGAACATTATGCCTGTATGGTTGACATACTAGGTCGTTCAGGATCTCTCTCTGAAGCCATTCAGTTTATTAATTCAATGCCTTACAAAGCTGATGCACTCGTATGGCGAACATTTCTTGGAGCCTGCCGAGTCCACGGTAACCTAGAACTAGGGAAACATGCTGCCAAAATGATTATCGAACAAGAGCCACATGATCCTGCTGCATACATCTTGCTATCAAATTTGTATGCATCCACCTCAAAATGGGATGAAGTTTCAAACATCAGAAAGGCGATGAAAGAAAAAAACTTGATCAAAGAAGCAGGTTGTAGCTGGGTAGAGGTTGAAAATAAAGTGCATAAGTTTTATGTTGGTGATACTTCACACCCAAAAGCTGCGGAAATATACGATGAACTTCAAAACTTGTCTGTAAAAATTAAGAAACTAGGATATGTCCCAAATTTGGATTTTGTGCTTCATGATGTGGAGGAAGAACAAAAGGAGAAACTTTTGTTTCAGCATAGTGAGAAAATAGCAGTGGCGTTTGGTCTCATCAGCACATCCAAGATGAAACCTATCAGAGTTTTCAAAAACCTACGAATTTGTGGGGATTGTCACTCCGCAATCAAATATATTTCAATGGCCACAGGCAGAGAGATCATTGTTAGAGATGCAAACCGGTTTCATCATATTAAAGATGGAAGATGCTCCTGCAATGAGTATTGGTGATGATGTTTTAAACTTAAAACTGGAGCAGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

mRNA sequence

ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

Coding sequence (CDS)

ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

Protein sequence

MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVENVLPIMILNRIFIF

Homology

[Close]

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_004151259.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucumis sativus] >KGN58274.1 hypothetical protein Csa_3G603610 [Cucumis sativus])

HSP 1 Score: 507.3 bits (1305), Expect = 3.3e-140
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITRLMQFGY
Sbjct: 241 LMITRLMQFGY 251

[Close]

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_008441615.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucumis melo])

HSP 1 Score: 468.8 bits (1205), Expect = 1.3e-128
Identity = 232/250 (92.80%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKI        SSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIXXXXXXXXSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLT+S+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTRSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

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BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_022922533.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 210/251 (83.67%), Postives = 225/251 (89.64%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLP PTTLKIP  SSNPS SLQFPTF+     T RLI++IN+GRL  AISTLEHMV  
Sbjct: 1   MQSLPPPTTLKIPSLSSNPSPSLQFPTFS-----TNRLIRQINDGRLRTAISTLEHMVQH 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLK+CIRTRSFD+G LVHEKLTQSDLQLDSVTLNSLISLYSK GQWEKA
Sbjct: 61  GSHPDLQTYSLFLKRCIRTRSFDLGRLVHEKLTQSDLQLDSVTLNSLISLYSKSGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
            SIF+ MG+SRDLI+WSAMVSCFANN MGF AL TF+DMI+NGYYPNEYCF+AA RACST
Sbjct: 121 KSIFEHMGNSRDLITWSAMVSCFANNKMGFEALHTFLDMIQNGYYPNEYCFSAAIRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEF SVGDSIFG+V+KTGY  SDVCVGCGLIDMFVKGRGDLVSAF+VFEKMPERNAVTWT
Sbjct: 181 AEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITR MQFGY
Sbjct: 241 LMITRFMQFGY 246

[Close]

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_022922534.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 210/251 (83.67%), Postives = 225/251 (89.64%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLP PTTLKIP  SSNPS SLQFPTF+     T RLI++IN+GRL  AISTLEHMV  
Sbjct: 1   MQSLPPPTTLKIPSLSSNPSPSLQFPTFS-----TNRLIRQINDGRLRTAISTLEHMVQH 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLK+CIRTRSFD+G LVHEKLTQSDLQLDSVTLNSLISLYSK GQWEKA
Sbjct: 61  GSHPDLQTYSLFLKRCIRTRSFDLGRLVHEKLTQSDLQLDSVTLNSLISLYSKSGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
            SIF+ MG+SRDLI+WSAMVSCFANN MGF AL TF+DMI+NGYYPNEYCF+AA RACST
Sbjct: 121 KSIFEHMGNSRDLITWSAMVSCFANNKMGFEALHTFLDMIQNGYYPNEYCFSAAIRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEF SVGDSIFG+V+KTGY  SDVCVGCGLIDMFVKGRGDLVSAF+VFEKMPERNAVTWT
Sbjct: 181 AEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITR MQFGY
Sbjct: 241 LMITRFMQFGY 246

[Close]

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_023552030.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417.5 bits (1072), Expect = 3.4e-113
Identity = 208/251 (82.87%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLP PTTLKIP  SSNPS SLQFPTF+     T RLI++IN+GRL  AISTLEHMV  
Sbjct: 1   MQSLPPPTTLKIPSLSSNPSPSLQFPTFS-----TNRLIRQINDGRLRTAISTLEHMVQH 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           G+HPDLQTYSLFLK+CIRTRSFD+G LVHE LTQSDLQLDSVTLNSLISLYSK GQWEKA
Sbjct: 61  GTHPDLQTYSLFLKRCIRTRSFDLGRLVHENLTQSDLQLDSVTLNSLISLYSKSGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
            SIF+ MG+SRDLISWSAMVSCFANN MGF AL TF+DMI+NGYYPNEYCF+AA RACST
Sbjct: 121 KSIFERMGNSRDLISWSAMVSCFANNKMGFEALHTFLDMIQNGYYPNEYCFSAAIRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
            EF SVGDSIFG+V+KTGY  SDVCVGCGLIDMFVKGRGDLVSAF+VFEKMPERNAVTWT
Sbjct: 181 VEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITR MQFGY
Sbjct: 241 LMITRFMQFGY 246

[Close]

BLAST of CsaV3_3G027960 vs. TAIR10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-59
Identity = 121/255 (47.45%), Postives = 158/255 (61.96%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLI-QEINNGRLHKAISTLEHMVH 60
           M S   P+  K+P  S         P+ +N   +  RLI + +N G L  A+S L+ M  
Sbjct: 3   MISFSFPSPAKLPIKSQ--------PSVSNRINVADRLILRHLNAGDLRGAVSALDLMAR 62

Query: 61  QGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 120
            G  P D  T+S  LK CIR R F +G LVH +L + D++ DSV  NSLISLYSK G   
Sbjct: 63  DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 122

Query: 121 KATSIFQLMG--SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 180
           KA  +F+ M     RD++SWSAM++C+ NN     A+  FV+ +E G  PN+YC+ A  R
Sbjct: 123 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 182

Query: 181 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 240
           ACS ++FV VG    GF++KTG+ +SDVCVGC LIDMFVKG     +A+KVF+KM E N 
Sbjct: 183 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 242

Query: 241 VTWTLMITRLMQFGY 252
           VTWTLMITR MQ G+
Sbjct: 243 VTWTLMITRCMQMGF 249

[Close]

BLAST of CsaV3_3G027960 vs. TAIR10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 68/210 (32.38%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101
           +N     +A+     M+ +G+ PD  TY   LK C R +S   G  +H ++ +  L+ D 
Sbjct: 108 VNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADV 167

Query: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI- 161
              NSLI++Y +CG+ E ++++F+ +  S+   SWS+MVS  A   M    LL F  M  
Sbjct: 168 FVQNSLINMYGRCGEMELSSAVFEKL-ESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 227

Query: 162 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 221
           E      E    +A  AC+    +++G SI GF+++    + ++ V   L+DM+VK  G 
Sbjct: 228 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR-NISELNIIVQTSLVDMYVK-CGC 287

Query: 222 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L  A  +F+KM +RN +T++ MI+ L   G
Sbjct: 288 LDKALHIFQKMEKRNNLTYSAMISGLALHG 314

[Close]

BLAST of CsaV3_3G027960 vs. TAIR10
Match: AT3G50420.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 0


Query: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97
           ++  + N ++   +    +M+  G  P   TYS+ L  C +  S+ +G L+H ++  SD 
Sbjct: 272 IVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDS 331

Query: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157
             D    N+L+ +Y  CG   +A  +F  +  + +L+SW++++S  + N  G +A+L + 
Sbjct: 332 LADLPLDNALLDMYCSCGDMREAFYVFGRI-HNPNLVSWNSIISGCSENGFGEQAMLMYR 391

Query: 158 DMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 217
            ++  +   P+EY F+AA  A +  E    G  + G V K GY +S V VG  L+ M+ K
Sbjct: 392 RLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERS-VFVGTTLLSMYFK 451

Query: 218 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVE 262
            R +  SA KVF+ M ER+ V WT MI    + G       F +E
Sbjct: 452 NR-EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIE 493

[Close]

BLAST of CsaV3_3G027960 vs. TAIR10
Match: AT3G15130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103
           NG L  ++S    M  QG +P+  T+S  LK C    + + G  +H    +   ++    
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
            NSL+ +YSKCG+  +A  +F+ +   R LISW+AM++ F +   G +AL TF  M E  
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 204

Query: 164 Y--YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKGRGD 223
               P+E+   +  +ACS+   +  G  I GF+V++G+   S   +   L+D++VK  G 
Sbjct: 205 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK-CGY 264

Query: 224 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L SA K F+++ E+  ++W+ +I    Q G
Sbjct: 265 LFSARKAFDQIKEKTMISWSSLILGYAQEG 292

[Close]

BLAST of CsaV3_3G027960 vs. TAIR10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-23
Identity = 59/179 (32.96%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
           D + Y+  LKKC   +    G +VH  + QS  + D V  N+L+++Y+KCG  E+A  +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184
           + M   RD ++W+ ++S ++ ++    ALL F  M+  GY PNE+  ++  +A +     
Sbjct: 119 EKM-PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 178

Query: 185 SVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 244
             G  + GF VK G+  S+V VG  L+D++ +  G +  A  VF+ +  RN V+W  +I
Sbjct: 179 CCGHQLHGFCVKCGF-DSNVHVGSALLDLYTR-YGLMDDAQLVFDALESRNDVSWNALI 234

[Close]

BLAST of CsaV3_3G027960 vs. Swiss-Prot
Match: sp|Q5G1T1|PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.2e-58
Identity = 121/255 (47.45%), Postives = 158/255 (61.96%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLI-QEINNGRLHKAISTLEHMVH 60
           M S   P+  K+P  S         P+ +N   +  RLI + +N G L  A+S L+ M  
Sbjct: 3   MISFSFPSPAKLPIKSQ--------PSVSNRINVADRLILRHLNAGDLRGAVSALDLMAR 62

Query: 61  QGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 120
            G  P D  T+S  LK CIR R F +G LVH +L + D++ DSV  NSLISLYSK G   
Sbjct: 63  DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 122

Query: 121 KATSIFQLMG--SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 180
           KA  +F+ M     RD++SWSAM++C+ NN     A+  FV+ +E G  PN+YC+ A  R
Sbjct: 123 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 182

Query: 181 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 240
           ACS ++FV VG    GF++KTG+ +SDVCVGC LIDMFVKG     +A+KVF+KM E N 
Sbjct: 183 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 242

Query: 241 VTWTLMITRLMQFGY 252
           VTWTLMITR MQ G+
Sbjct: 243 VTWTLMITRCMQMGF 249

[Close]

BLAST of CsaV3_3G027960 vs. Swiss-Prot
Match: sp|Q9C6T2|PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 68/210 (32.38%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101
           +N     +A+     M+ +G+ PD  TY   LK C R +S   G  +H ++ +  L+ D 
Sbjct: 108 VNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADV 167

Query: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI- 161
              NSLI++Y +CG+ E ++++F+ +  S+   SWS+MVS  A   M    LL F  M  
Sbjct: 168 FVQNSLINMYGRCGEMELSSAVFEKL-ESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 227

Query: 162 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 221
           E      E    +A  AC+    +++G SI GF+++    + ++ V   L+DM+VK  G 
Sbjct: 228 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR-NISELNIIVQTSLVDMYVK-CGC 287

Query: 222 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L  A  +F+KM +RN +T++ MI+ L   G
Sbjct: 288 LDKALHIFQKMEKRNNLTYSAMISGLALHG 314

[Close]

BLAST of CsaV3_3G027960 vs. Swiss-Prot
Match: sp|P0C898|PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103
           NG L  ++S    M  QG +P+  T+S  LK C    + + G  +H    +   ++    
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
            NSL+ +YSKCG+  +A  +F+ +   R LISW+AM++ F +   G +AL TF  M E  
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 204

Query: 164 Y--YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKGRGD 223
               P+E+   +  +ACS+   +  G  I GF+V++G+   S   +   L+D++VK  G 
Sbjct: 205 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK-CGY 264

Query: 224 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L SA K F+++ E+  ++W+ +I    Q G
Sbjct: 265 LFSARKAFDQIKEKTMISWSSLILGYAQEG 292

[Close]

BLAST of CsaV3_3G027960 vs. Swiss-Prot
Match: sp|Q9SCT2|PP277_ARATH (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E85 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 0


Query: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97
           ++  + N ++   +    +M+  G  P   TYS+ L  C +  S+ +G L+H ++  SD 
Sbjct: 272 IVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDS 331

Query: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157
             D    N+L+ +Y  CG   +A  +F  +  + +L+SW++++S  + N  G +A+L + 
Sbjct: 332 LADLPLDNALLDMYCSCGDMREAFYVFGRI-HNPNLVSWNSIISGCSENGFGEQAMLMYR 391

Query: 158 DMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 217
            ++  +   P+EY F+AA  A +  E    G  + G V K GY +S V VG  L+ M+ K
Sbjct: 392 RLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERS-VFVGTTLLSMYFK 451

Query: 218 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVE 262
            R +  SA KVF+ M ER+ V WT MI    + G       F +E
Sbjct: 452 NR-EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIE 493

[Close]

BLAST of CsaV3_3G027960 vs. Swiss-Prot
Match: sp|Q9LIQ7|PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 59/179 (32.96%), Postives = 100/179 (55.87%), Query Frame = 0


Query: 65  DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
           D + Y+  LKKC   +    G +VH  + QS  + D V  N+L+++Y+KCG  E+A  +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 125 QLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFV 184
           + M   RD ++W+ ++S ++ ++    ALL F  M+  GY PNE+  ++  +A +     
Sbjct: 119 EKM-PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 178

Query: 185 SVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 244
             G  + GF VK G+  S+V VG  L+D++ +  G +  A  VF+ +  RN V+W  +I
Sbjct: 179 CCGHQLHGFCVKCGF-DSNVHVGSALLDLYTR-YGLMDDAQLVFDALESRNDVSWNALI 234

[Close]

BLAST of CsaV3_3G027960 vs. TrEMBL
Match: tr|A0A0A0LBE4|A0A0A0LBE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603610 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 2.2e-140
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITRLMQFGY
Sbjct: 241 LMITRLMQFGY 251

[Close]

BLAST of CsaV3_3G027960 vs. TrEMBL
Match: tr|A0A1S3B4K0|A0A1S3B4K0_CUCME (pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485697 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 8.6e-129
Identity = 232/250 (92.80%), Postives = 239/250 (95.60%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKI        SSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIXXXXXXXXSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLT+S+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTRSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

[Close]

BLAST of CsaV3_3G027960 vs. TrEMBL
Match: tr|A0A2P5FGD4|A0A2P5FGD4_9ROSA (DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_072260 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 8.7e-81
Identity = 156/259 (60.23%), Postives = 192/259 (74.13%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPF--PSSNPSSSLQFPTFTNPNP-------LTGRLIQEINNGRLHKAI 60
           M SL L + L +P+  P  NP      P   N +P       L  RLI  +N G L KAI
Sbjct: 1   MMSLSLASKLALPYERPRENPK-----PPNLNLSPNNCKFQTLHSRLIHNLNVGHLQKAI 60

Query: 61  STLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLY 120
           STL+ MV  G HPDL TYSLFLK CIR+RSF++G LVH  L +S L+LDS+TLNSLISLY
Sbjct: 61  STLDLMVDHGLHPDLSTYSLFLKSCIRSRSFELGKLVHAHLLRSKLELDSLTLNSLISLY 120

Query: 121 SKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 180
           +K G W KA  IF+ MG+ R+L+SW+A+VSCFANN+M + A+L FVDM+ENG+YPNEYCF
Sbjct: 121 AKHGDWAKANEIFESMGNKRNLVSWAAIVSCFANNDMEYEAILAFVDMVENGFYPNEYCF 180

Query: 181 AAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKM 240
           AA  RACS  E +S+G++IFG V+K+GY++SDVCVGC LIDMF KG GDLV+A+KVF KM
Sbjct: 181 AAVIRACSNMEDISIGETIFGSVIKSGYIESDVCVGCALIDMFAKGSGDLVNAYKVFVKM 240

Query: 241 PERNAVTWTLMITRLMQFG 251
           PE+N VTWTLM+TRL Q G
Sbjct: 241 PEKNGVTWTLMMTRLAQLG 254

[Close]

BLAST of CsaV3_3G027960 vs. TrEMBL
Match: tr|A0A061G281|A0A061G281_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_015369 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 155/258 (60.08%), Postives = 183/258 (70.93%), Query Frame = 0


Query: 1   MQSLPLPTTLKIP----FPSSNPSSSLQFPTFTNP---NPLTGRLIQEINNGRLHKAIST 60
           M SL LP+  K P     PS+ P  +L  P+   P     L  RLI  ++ G LHKA+ST
Sbjct: 3   MMSLSLPSPAKPPPHSLKPSTRPRQTLAPPSVIRPVNFETLRNRLINHLDEGHLHKAVST 62

Query: 61  LEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSK 120
           L+ M  Q +HPDL TYSL LK CIR+R F +G +VH  L QS L+LDSV  NSLISLYSK
Sbjct: 63  LDVMARQNTHPDLITYSLLLKACIRSRDFQLGKIVHTNLNQSKLELDSVLFNSLISLYSK 122

Query: 121 CGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAA 180
            G W +A  IFQ M   RDL+SWSAM+SCFANN M F+A+LTF+DM+ENG+YPNEYCF A
Sbjct: 123 SGDWARAHKIFQRMEDKRDLVSWSAMISCFANNKMEFKAILTFLDMLENGFYPNEYCFTA 182

Query: 181 ATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPE 240
             RACS AEF S+G+ I GF+VK+GYL+SD  VGC LIDMFVKG  DL SAFKVF+KMP 
Sbjct: 183 VVRACSKAEFFSIGEIILGFLVKSGYLESDTNVGCALIDMFVKGNSDLASAFKVFDKMPA 242

Query: 241 RNAVTWTLMITRLMQFGY 252
           +N V WTLMITR  Q GY
Sbjct: 243 KNVVAWTLMITRCTQLGY 260

[Close]

BLAST of CsaV3_3G027960 vs. TrEMBL
Match: tr|A0A2I4HX78|A0A2I4HX78_9ROSI (pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Juglans regia OX=51240 GN=LOC109022332 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.5e-80
Identity = 154/259 (59.46%), Postives = 191/259 (73.75%), Query Frame = 0


Query: 1   MQSLPLPTTLKIPFPS---SNPSSSLQFPTF--TNPNP----LTGRLIQEINNGRLHKAI 60
           M +L  P+  K+P  S   SNPSS    P+   ++P P    L  RL    N G LH+AI
Sbjct: 1   MLALSFPSPSKLPSASPKPSNPSSGRNLPSSKPSSPTPTFEVLNHRLTHHHNVGHLHEAI 60

Query: 61  STLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLY 120
           STL+ MV +G HPDL TY++ LK CIR+R+F +G LVH + TQS L+ +SV  NSLISLY
Sbjct: 61  STLDVMVRKGVHPDLTTYAVLLKSCIRSRNFQLGKLVHNRFTQSQLEPNSVIFNSLISLY 120

Query: 121 SKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCF 180
           SKCG W KA +IF  +G  +DL+SWSAMVSCFANN+M F A+ TF++M+ENG++PNEYCF
Sbjct: 121 SKCGDWAKAKAIFDSVGDKKDLVSWSAMVSCFANNDMEFEAIGTFLEMLENGFHPNEYCF 180

Query: 181 AAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKM 240
           AAA RACST + + +G  IFGFV+K+GY +SDVCVGC LIDMFVKG GD+  A+KVFEKM
Sbjct: 181 AAAIRACSTVDTILIGKMIFGFVIKSGYFESDVCVGCALIDMFVKGSGDVELAYKVFEKM 240

Query: 241 PERNAVTWTLMITRLMQFG 251
           PE+N VTWTLMITR MQ G
Sbjct: 241 PEKNTVTWTLMITRFMQLG 259

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151259.1	3.3e-140	100.00	PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic ...	[more]
XP_008441615.1	1.3e-128	92.80	PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic ...	[more]
XP_022922533.1	4.1e-114	83.67	pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 ...	[more]
XP_022922534.1	4.1e-114	83.67	pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X2 ...	[more]
XP_023552030.1	3.4e-113	82.87	pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucurbita ...	[more]

BLAST of CsaV3_3G027960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49170.1	4.5e-59	47.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G31920.1	1.8e-23	32.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G50420.1	2.3e-23	30.67	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G15130.1	2.3e-23	31.90	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	6.8e-23	32.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsaV3_3G027960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5G1T1\|PP272_ARATH	8.2e-58	47.45	Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop...	[more]
sp\|Q9C6T2\|PPR68_ARATH	3.2e-22	32.38	Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C898\|PP232_ARATH	4.2e-22	31.90	Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis th...	[more]
sp\|Q9SCT2\|PP277_ARATH	4.2e-22	30.67	Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LIQ7\|PP252_ARATH	1.2e-21	32.96	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_3G027960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBE4\|A0A0A0LBE4_CUCSA	2.2e-140	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603610 PE=4 SV=1	[more]
tr\|A0A1S3B4K0\|A0A1S3B4K0_CUCME	8.6e-129	92.80	pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Cucumis ...	[more]
tr\|A0A2P5FGD4\|A0A2P5FGD4_9ROSA	8.7e-81	60.23	DYW domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_072260 ...	[more]
tr\|A0A061G281\|A0A061G281_THECC	1.5e-80	60.08	Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao OX=3641 GN=...	[more]
tr\|A0A2I4HX78\|A0A2I4HX78_9ROSI	2.5e-80	59.46	pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Juglans ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G027960.1	CsaV3_3G027960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 102..128 e-value: 1.3E-5 score: 23.0 coord: 134..168 e-value: 3.5E-5 score: 21.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 102..129 e-value: 1.7E-6 score: 27.8 coord: 134..163 e-value: 0.0021 score: 18.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 132..166 score: 9.164
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 30..64 score: 5.492
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 100..130 score: 10.008
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 203..238 score: 6.971
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 65..99 score: 6.763
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 41..199 e-value: 4.8E-29 score: 103.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 149..254
None	No IPR available	PANTHER	PTHR24015:SF154	SUBFAMILY NOT NAMED	coord: 149..254 coord: 64..160
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 64..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G027960	Carg15074	Silver-seed gourd	carcucB1031
CsaV3_3G027960	Cla97C05G091080	Watermelon (97103) v2	cucwmbB226
CsaV3_3G027960	Bhi01G001099	Wax gourd	cucwgoB297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G027960	Cucurbita maxima (Rimu)	cmacucB0378
CsaV3_3G027960	Cucurbita maxima (Rimu)	cmacucB0492
CsaV3_3G027960	Cucurbita moschata (Rifu)	cmocucB0481
CsaV3_3G027960	Cucurbita pepo (Zucchini)	cpecucB0038
CsaV3_3G027960	Cucurbita pepo (Zucchini)	cpecucB0253
CsaV3_3G027960	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G027960	Bottle gourd (USVL1VR-Ls)	cuclsiB238
CsaV3_3G027960	Melon (DHL92) v3.6.1	cucmedB196
CsaV3_3G027960	Watermelon (Charleston Gray)	cucwcgB247
CsaV3_3G027960	Watermelon (97103) v1	cucwmB263
CsaV3_3G027960	Cucumber (Gy14) v1	cgycucB016
CsaV3_3G027960	Cucumber (Gy14) v2	cgybcucB117