CsaV3_3G027950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G027950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ring finger protein, putative
Location	chr3 : 24417289 .. 24418543 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTCTTCTTCTTCTTCTCTTCTTTTCTTTCATCAACCTAGCAACCAGCTCTGAATTATGCTTTGATTCTCACTGTACTGGTGATTATCAGACGATTCGATTCCCTTTTAGGATTGTAAATGGCCAACCAAAGTCTTGTGGCTATCCTGGCTTTGATTTGTCTTGCCATCCCACAGGTGAACCGTTGCTTCATCTTCCTCATTCTGGAGATTTCATTGTCCAAAATATAGATTATATGCATCAAGAAATAAGGATCAATGATCCAGACTACTGTCTTCCTAAAAAGATTCTCTACCTCAATCTTTCTGGATCACCATTTGTCAAGAAAAACAGTCAAACTGTTGCCTTCTTTAATTGTTCATCTAATTACATACCATATTGGTATAATGATCCAATTTATTGCCTAAGTAGCCATTCACACACAGTCTATGCTTCATCTTCTCCAATGCTTATAAACATGTTTGAATCAAACTGTGCTATGATAAAAACTGTTTCAGTGCCATCTTCATTTTCTTATTCGTCGAACCTGTGGGAATATCTTCTGTTAAAATGGGAAAATCCTGATTGTGGTAGGTGTGAATCAGTTGGTCAAAGATGTGAAGTCAAATCCAATTCAAGCAATGAAATTCAATGTACAGACTCTCAAGGTACCAAATGTGCAAACTTCTGAACTTAGCTAGTGAATATTGTAAGCAAGGATCTTGTAACCGTTGACCATTAATTGGCTATGATATATGTATTATTACTCTTAAGTTTATGAGGTAGATCTTGTTATATGTGGCAGTATTAATAGTTTATGACAATTAAGTTTTTGCGTTTTGTCAGGGAGATCTAGAGTTGGAGCCAATGTTGTGTCTATAGCAATGGGAGTGGTAGCTGCTGTGATATGCTTTTTGGGTGTCCTGTGCTGCCTCTGTTTCAAAATAAATTTTCGTAGGAGAGGCAGTTCCAGCAGTATAGCCCATTGGACGGTATCTTCTCAGCGTACAAGAACGATGGGCCTAAATGGGGCGACAATTGAATCCTACCCAAAATTTGTATTGGATGAAAGCTTAAGCCTACCGAAGCCCAATAACAATGTTTGCCCAATTTGTTTGGCCCAATATCAGCCGAAAGAGATTGTGAAGAGTATACCCAATTGCCAACATTGTTTCCATGAATGTTGTATTGATGAATGGCTCCGATTGAAAGCTTCTTGCCCTGTTTGTAGGAAGTCTCCCATTGAAGCTCCACCCTCCAACCCTTCTTAG

mRNA sequence

ATGATTCTTCTTCTTCTTCTTCTCTTCTTTTCTTTCATCAACCTAGCAACCAGCTCTGAATTATGCTTTGATTCTCACTGTACTGGTGATTATCAGACGATTCGATTCCCTTTTAGGATTGTAAATGGCCAACCAAAGTCTTGTGGCTATCCTGGCTTTGATTTGTCTTGCCATCCCACAGGTGAACCGTTGCTTCATCTTCCTCATTCTGGAGATTTCATTGTCCAAAATATAGATTATATGCATCAAGAAATAAGGATCAATGATCCAGACTACTGTCTTCCTAAAAAGATTCTCTACCTCAATCTTTCTGGATCACCATTTGTCAAGAAAAACAGTCAAACTGTTGCCTTCTTTAATTGTTCATCTAATTACATACCATATTGGTATAATGATCCAATTTATTGCCTAAGTAGCCATTCACACACAGTCTATGCTTCATCTTCTCCAATGCTTATAAACATGTTTGAATCAAACTGTGCTATGATAAAAACTGTTTCAGTGCCATCTTCATTTTCTTATTCGTCGAACCTGTGGGAATATCTTCTGTTAAAATGGGAAAATCCTGATTGTGGTAGGTGTGAATCAGTTGGTCAAAGATGTGAAGTCAAATCCAATTCAAGCAATGAAATTCAATGTACAGACTCTCAAGGGAGATCTAGAGTTGGAGCCAATGTTGTGTCTATAGCAATGGGAGTGGTAGCTGCTGTGATATGCTTTTTGGGTGTCCTGTGCTGCCTCTGTTTCAAAATAAATTTTCGTAGGAGAGGCAGTTCCAGCAGTATAGCCCATTGGACGGTATCTTCTCAGCGTACAAGAACGATGGGCCTAAATGGGGCGACAATTGAATCCTACCCAAAATTTGTATTGGATGAAAGCTTAAGCCTACCGAAGCCCAATAACAATGTTTGCCCAATTTGTTTGGCCCAATATCAGCCGAAAGAGATTGTGAAGAGTATACCCAATTGCCAACATTGTTTCCATGAATGTTGTATTGATGAATGGCTCCGATTGAAAGCTTCTTGCCCTGTTTGTAGGAAGTCTCCCATTGAAGCTCCACCCTCCAACCCTTCTTAG

Coding sequence (CDS)

ATGATTCTTCTTCTTCTTCTTCTCTTCTTTTCTTTCATCAACCTAGCAACCAGCTCTGAATTATGCTTTGATTCTCACTGTACTGGTGATTATCAGACGATTCGATTCCCTTTTAGGATTGTAAATGGCCAACCAAAGTCTTGTGGCTATCCTGGCTTTGATTTGTCTTGCCATCCCACAGGTGAACCGTTGCTTCATCTTCCTCATTCTGGAGATTTCATTGTCCAAAATATAGATTATATGCATCAAGAAATAAGGATCAATGATCCAGACTACTGTCTTCCTAAAAAGATTCTCTACCTCAATCTTTCTGGATCACCATTTGTCAAGAAAAACAGTCAAACTGTTGCCTTCTTTAATTGTTCATCTAATTACATACCATATTGGTATAATGATCCAATTTATTGCCTAAGTAGCCATTCACACACAGTCTATGCTTCATCTTCTCCAATGCTTATAAACATGTTTGAATCAAACTGTGCTATGATAAAAACTGTTTCAGTGCCATCTTCATTTTCTTATTCGTCGAACCTGTGGGAATATCTTCTGTTAAAATGGGAAAATCCTGATTGTGGTAGGTGTGAATCAGTTGGTCAAAGATGTGAAGTCAAATCCAATTCAAGCAATGAAATTCAATGTACAGACTCTCAAGGGAGATCTAGAGTTGGAGCCAATGTTGTGTCTATAGCAATGGGAGTGGTAGCTGCTGTGATATGCTTTTTGGGTGTCCTGTGCTGCCTCTGTTTCAAAATAAATTTTCGTAGGAGAGGCAGTTCCAGCAGTATAGCCCATTGGACGGTATCTTCTCAGCGTACAAGAACGATGGGCCTAAATGGGGCGACAATTGAATCCTACCCAAAATTTGTATTGGATGAAAGCTTAAGCCTACCGAAGCCCAATAACAATGTTTGCCCAATTTGTTTGGCCCAATATCAGCCGAAAGAGATTGTGAAGAGTATACCCAATTGCCAACATTGTTTCCATGAATGTTGTATTGATGAATGGCTCCGATTGAAAGCTTCTTGCCCTGTTTGTAGGAAGTCTCCCATTGAAGCTCCACCCTCCAACCCTTCTTAG

Protein sequence

MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS

Homology

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BLAST of CsaV3_3G027950 vs. NCBI nr
Match: XP_004151260.2 (PREDICTED: putative RING-H2 finger protein ATL21B [Cucumis sativus] >KGN58273.1 hypothetical protein Csa_3G603600 [Cucumis sativus])

HSP 1 Score: 748.0 bits (1930), Expect = 1.4e-212
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60
           MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT
Sbjct: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60

Query: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120
           GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN
Sbjct: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120

Query: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE 180
           CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE
Sbjct: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE 180

Query: 181 YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF 240
           YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF
Sbjct: 181 YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF 240

Query: 241 LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN 300
           LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN
Sbjct: 241 LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN 300

Query: 301 NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS 359
           NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS
Sbjct: 301 NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS 358

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BLAST of CsaV3_3G027950 vs. NCBI nr
Match: XP_008441616.1 (PREDICTED: putative RING-H2 finger protein ATL21A isoform X1 [Cucumis melo])

HSP 1 Score: 653.3 bits (1684), Expect = 4.8e-184
Identity = 314/356 (88.20%), Postives = 333/356 (93.54%), Query Frame = 0


Query: 3   LLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 62
           ++LLLLFFSF NLAT+SELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE
Sbjct: 1   MILLLLFFSFFNLATTSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 60

Query: 63  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 122
            LLHLP SGDFIVQ IDYMHQEIRINDPD CLPKKIL LNLSGSPFVKKNSQ+ AF+NCS
Sbjct: 61  TLLHLPPSGDFIVQTIDYMHQEIRINDPDNCLPKKILSLNLSGSPFVKKNSQSFAFYNCS 120

Query: 123 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWEYL 182
           S+Y+PYWY DPIYCLSS S+TVYASSSP+LINMFESNC MIKTVSVPSS SYSS LW+ L
Sbjct: 121 SSYMPYWYIDPIYCLSSLSYTVYASSSPLLINMFESNCVMIKTVSVPSSSSYSSKLWDDL 180

Query: 183 LLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICFLG 242
           LLKWENPDCGRCES+GQRCE+KSNSSN IQCT+SQGRSRVGANVVSIAMGVVAAVICFLG
Sbjct: 181 LLKWENPDCGRCESIGQRCELKSNSSNGIQCTNSQGRSRVGANVVSIAMGVVAAVICFLG 240

Query: 243 VLCCLCFKINFRR-RGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNN 302
           +LCCLCFKINFRR R +SS+IAHW VSSQ     GLNG TI+SYPKFVLDESLSLPKPNN
Sbjct: 241 LLCCLCFKINFRRTRSNSSNIAHWIVSSQ-----GLNGLTIDSYPKFVLDESLSLPKPNN 300

Query: 303 NVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNP 358
           NVCPICLAQY+PKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSP+EAPPSNP
Sbjct: 301 NVCPICLAQYRPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPLEAPPSNP 351

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BLAST of CsaV3_3G027950 vs. NCBI nr
Match: XP_022141098.1 (putative RING-H2 finger protein ATL21B [Momordica charantia])

HSP 1 Score: 466.8 bits (1200), Expect = 6.4e-128
Identity = 236/364 (64.84%), Postives = 276/364 (75.82%), Query Frame = 0


Query: 2   ILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSC--HP 61
           +L   LL   F N ATSS  CF+S C GDYQTIRFPFRI N QPKSCGYPGFDLSC  HP
Sbjct: 5   LLRCCLLLCCFFNPATSSGFCFESRCGGDYQTIRFPFRIENRQPKSCGYPGFDLSCQAHP 64

Query: 62  TG--EPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVA 121
           TG  +PLLHLP SGDF V+ IDY +QEI INDP+ CL  KIL LNLSGSPFV KNSQ   
Sbjct: 65  TGQDQPLLHLPPSGDFSVKYIDYRNQEIWINDPNNCLAGKILSLNLSGSPFVAKNSQDFT 124

Query: 122 FFNCSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSN 181
           FFNCS++Y P W  DPIYCL S SH V+ASSSP  I++  SNC +IKTVSVP S+S+   
Sbjct: 125 FFNCSADYSPSWLIDPIYCLGSSSHAVFASSSPATIDILSSNCVVIKTVSVPVSWSFWPK 184

Query: 182 LWEYLLLKWENPDCGRCESVGQRCEVKSNSS--NEIQCTD--SQGRSRVGANVVSIAMGV 241
           LW+ LLL+WENP CG CES+G  CE+K NSS  +EIQCT+          ++ +S+A+GV
Sbjct: 185 LWDDLLLRWENPACGSCESLGGGCELKPNSSSRHEIQCTNIPQAATPSNSSSALSMAVGV 244

Query: 242 VAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDES 301
           VAAV+CFL + CCLC ++  R R SS    HWTVSSQ T TMGL+G TI+SYP FVL +S
Sbjct: 245 VAAVLCFLILXCCLCARLRSRPRNSSPE-THWTVSSQPTTTMGLDGPTIDSYPNFVLGQS 304

Query: 302 LSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAP 358
           L LP+PNNN+CPICL+QY+PKEI+KSIPNCQHCFH+ CI+EWLRL ASCPVCRKSP E+ 
Sbjct: 305 LRLPEPNNNICPICLSQYRPKEILKSIPNCQHCFHQHCIEEWLRLNASCPVCRKSPFESL 364

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BLAST of CsaV3_3G027950 vs. NCBI nr
Match: XP_022141168.1 (putative RING-H2 finger protein ATL21A [Momordica charantia])

HSP 1 Score: 422.2 bits (1084), Expect = 1.8e-114
Identity = 221/368 (60.05%), Postives = 271/368 (73.64%), Query Frame = 0


Query: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60
           M++L LLL   FI   +SS LCFD+ C GD QTIRFPFRI N QP SCGYPGFDLSCH T
Sbjct: 1   MLILCLLLLCFFIPAISSSGLCFDTRCQGDDQTIRFPFRIENRQPSSCGYPGFDLSCHAT 60

Query: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120
            +P LHLP SG+F VQ IDY +QEI +NDP+ CLP KIL LNLSGSPF  K +Q   FFN
Sbjct: 61  AQPRLHLPPSGNFSVQFIDYQNQEIWVNDPNGCLPGKILSLNLSGSPFAGKYTQDFTFFN 120

Query: 121 CSSNY-IPYWYN-DPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNL 180
           CS+   +PY  N +PI CLS  S+ V+ASSSPM+IN   SNC ++K+VSVP S+S+SS+L
Sbjct: 121 CSAKVRLPYGLNLNPISCLSGLSYAVFASSSPMIINDLSSNCVVMKSVSVPVSWSFSSDL 180

Query: 181 WEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC---TDSQGRSRV--GANVVSIAMGV 240
            + L L W+ P CG CES G RCE   NSSN+IQC   T  Q + R+  GA   ++A+GV
Sbjct: 181 RDDLQLAWKKPACGSCESRGGRCEPNPNSSNQIQCTPITQPQPKQRLPRGAR-YAVAIGV 240

Query: 241 -VAAVICFLGVLCCLCFKINF--RRRGSSSSI-AHWTVSSQRTRTMGLNGATIESYPKFV 300
            V A +CFLG+LCC C ++ +  R R  SSSI AHW +SSQ T TMGL+G TI+SYPKFV
Sbjct: 241 GVPAGLCFLGLLCCFCARLRYYSRPRARSSSIEAHWVISSQPTTTMGLDGPTIDSYPKFV 300

Query: 301 LDESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSP 358
           L +SL LP+PN ++CPICL++Y+PKEIVK+IP+CQHCFH+ CIDEWLRL ASCP CRK P
Sbjct: 301 LGQSLRLPEPNGSICPICLSEYRPKEIVKTIPDCQHCFHQDCIDEWLRLNASCPFCRKPP 360

[Close]

BLAST of CsaV3_3G027950 vs. NCBI nr
Match: XP_008441617.1 (PREDICTED: RING-H2 finger protein ATL22-like isoform X2 [Cucumis melo])

HSP 1 Score: 421.0 bits (1081), Expect = 4.0e-114
Identity = 222/356 (62.36%), Postives = 235/356 (66.01%), Query Frame = 0


Query: 3   LLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 62
           ++LLLLFFSF NLAT+SELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT  
Sbjct: 1   MILLLLFFSFFNLATTSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT-- 60

Query: 63  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 122
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 123 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWEYL 182
                                                        VPSS SYSS LW+ L
Sbjct: 121 ---------------------------------------------VPSSSSYSSKLWDDL 180

Query: 183 LLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICFLG 242
           LLKWENPDCGRCES+GQRCE+KSNSSN IQCT+SQGRSRVGANVVSIAMGVVAAVICFLG
Sbjct: 181 LLKWENPDCGRCESIGQRCELKSNSSNGIQCTNSQGRSRVGANVVSIAMGVVAAVICFLG 240

Query: 243 VLCCLCFKINFRR-RGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNN 302
           +LCCLCFKINFRR R +SS+IAHW VSSQ     GLNG TI+SYPKFVLDESLSLPKPNN
Sbjct: 241 LLCCLCFKINFRRTRSNSSNIAHWIVSSQ-----GLNGLTIDSYPKFVLDESLSLPKPNN 244

Query: 303 NVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNP 358
           NVCPICLAQY+PKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSP+EAPPSNP
Sbjct: 301 NVCPICLAQYRPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPLEAPPSNP 244

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BLAST of CsaV3_3G027950 vs. TAIR10
Match: AT5G53110.1 (RING/U-box superfamily protein)

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-70
Identity = 155/349 (44.41%), Postives = 210/349 (60.17%), Query Frame = 0


Query: 27  CTGDYQTIRFPFRIVNGQPKSCGY-PGFDLSC--HPTGEPLLHLPHSGDFIVQNIDYMHQ 86
           C  D   IRFPFR+ + Q  SCGY  GFDL+C  +      + LP SG+F V+ IDY  Q
Sbjct: 35  CRRDGPIIRFPFRLKHQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQ 94

Query: 87  EIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNC-SSNYIPYWYNDPIYCLSSHSH 146
           EI INDP+ CLP++IL LNL+ +PF     +   FFNC +S Y+ +   +PI CLS  + 
Sbjct: 95  EIWINDPNNCLPQRILQLNLNSTPFSGVYMRQFTFFNCPTSEYLRFRPLNPITCLSGKNS 154

Query: 147 TVYASSSPMLINMFES-NCAMIKTVSVPSSFSY------SSNLWEYLLLKWENPDCGRCE 206
           TV+A+ SP +IN   S +C ++KTV VP  + +      SS+L + L L W  P C RCE
Sbjct: 155 TVFATPSPRVINYLSSQSCRLMKTVYVPVRWPFYEQIVSSSDLSDNLWLTWRVPRCSRCE 214

Query: 207 SVGQRCEVKSNSSNEIQCT--DSQGRSRVGANVVSIAMGVVAAVICFLGVLCCLCFKINF 266
             G +C +KSNSS EI C+        R     +++  G+  A+I F G+ C +  KI+ 
Sbjct: 215 IKGGKCGIKSNSSREIICSHVHKPAIPRRARYAIAVGAGIPGALIVF-GLFCFVYSKISS 274

Query: 267 ---RRR-----GSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNNNVCP 326
              RRR       +++ AH+  SS     MGL+G TIESYPK VL ES  LPK ++  C 
Sbjct: 275 CIKRRRLVPTPEINNAQAHYLHSS--VIVMGLDGPTIESYPKIVLGESKRLPKVDDATCA 334

Query: 327 ICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPP 355
           ICL++Y+PKE +++IP CQHCFH  CIDEWL+L  +CPVCR SP +  P
Sbjct: 335 ICLSEYEPKETLRTIPQCQHCFHADCIDEWLKLNGTCPVCRNSPEQILP 380

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BLAST of CsaV3_3G027950 vs. TAIR10
Match: AT2G25410.1 (RING/U-box superfamily protein)

HSP 1 Score: 208.4 bits (529), Expect = 7.5e-54
Identity = 129/370 (34.86%), Postives = 200/370 (54.05%), Query Frame = 0


Query: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60
           ++ L+ L FF  +N A+  + C+   C+ +    RFPF + + QP+SCGY GF+L C   
Sbjct: 9   LLNLIFLFFFPLLN-ASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDD 68

Query: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120
               L LP S  F+V+ IDY  Q IR+NDP+ CL +++L  + SGSPF    S+   F  
Sbjct: 69  ANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFLI 128

Query: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSF-------- 180
           C            I CL + + + +      L +M  S+C + K + +P S+        
Sbjct: 129 CPKEANITASFRAIDCLGNTTSSFFVVQFENLGSM-PSSCHIFKILPLPFSWFVAYTTYP 188

Query: 181 --SYSSNLWEYLLLKWENPDCGRCE-SVGQRCEVKSNSSNEIQCTDS--QGRSRVGANVV 240
               S ++W    LKW++PDC  CE     RC  K+N+S++++C  S   G    G  V+
Sbjct: 189 DGQNSRDMW----LKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTGLQVL 248

Query: 241 SI----AMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQ---RTRTMGLNGA 300
            I     +G + A+   +G++ C   +++ + + +  +    +V+SQ       +GL+ +
Sbjct: 249 KIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNEVARIGLDES 308

Query: 301 TIESYPKFVLDESLSLPKPNNN-VCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLK 350
           TIESY K  L ES  LP  +N+ VCPICL++Y  KE V+ +P C+HCFH  CID WL+L 
Sbjct: 309 TIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLH 368

[Close]

BLAST of CsaV3_3G027950 vs. TAIR10
Match: AT2G46494.1 (RING/U-box superfamily protein)

HSP 1 Score: 208.4 bits (529), Expect = 7.5e-54
Identity = 140/367 (38.15%), Postives = 196/367 (53.41%), Query Frame = 0


Query: 1   MILLLLLLFFSF-INLATSSELCFDS----HCTGDYQT-IRFPFRIVNGQPKSCGYPGFD 60
           + LL  LLFF F +  A++   C  S    H  G  +  IRFPF         C +P F+
Sbjct: 7   LFLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFN 66

Query: 61  LSCHPTGEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQ 120
           L C      +L LP SG F VQ IDY  Q+I INDP+ CL K++L  N+SGSPF  +   
Sbjct: 67  LLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSPRFDT 126

Query: 121 TVAFFNCSSNYI-PYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVP--SS 180
              F  C +  + P WY   I CLS+ + + +A+S+  L      +C ++K + VP  S 
Sbjct: 127 LYTFLTCPNELVLPSWY-PSIPCLSNSTSSFFATSNFALAESMLPSCQIVKRIYVPADSP 186

Query: 181 FS---YSSNLWEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVS 240
           F+   +SS L + LLL+W +P+C  CE    RC  K+ +S E++C  ++    +   VV+
Sbjct: 187 FAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSRAVVA 246

Query: 241 --IAMGVVAAVICFLGVLCCLCFKINF--RRRGSSSSIAHWTVSSQRTRTM---GLNGAT 300
             I + ++ AVI F   + C+  +I+   RRR  +   A  TV  Q    M   GL+ +T
Sbjct: 247 VLICLSIIGAVILF---VTCIAIRIHNTPRRRHWAVPAAAATVMQQPREVMATRGLDQST 306

Query: 301 IESYPKFVLDESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKAS 349
           IE Y    L ES   P  N  VCPICL++Y  KE V+ IP C HCFH  CID WL++  S
Sbjct: 307 IEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGS 360

[Close]

BLAST of CsaV3_3G027950 vs. TAIR10
Match: AT2G46495.1 (RING/U-box superfamily protein)

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-53
Identity = 130/369 (35.23%), Postives = 197/369 (53.39%), Query Frame = 0


Query: 4   LLLLLFFSFINL-ATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 63
           L L LFF F  L A+  + C  S C  D   +RFPF +++ QP+ CG+ GF+L C  + +
Sbjct: 7   LFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPK 66

Query: 64  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 123
             L LP+SG F+V+ IDY+ Q+IR+ DP+ CL +K+L  ++S SPF      +  F +C 
Sbjct: 67  TALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYTFLSCP 126

Query: 124 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVP---------SSFS 183
           +        D I CL + + +  A++S  L      +C ++KT+ VP         S FS
Sbjct: 127 NEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVIAKKSRFS 186

Query: 184 YSSN---LWEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC--TDSQGRSRVGANVVS 243
              N   LW    LKW++P C  CE    RC  +SN+S +++C   ++ G +     +  
Sbjct: 187 TDVNDKDLW----LKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQVLKI 246

Query: 244 IAMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTR----TMGLNGATIES 303
           I + ++  +  F     C+   +    R +S    +  +++ +      T GL+ + IES
Sbjct: 247 ILLSIIGPLTIF---ATCIAVGVCTSERFASLIQRNVAIAALQPNEVIVTTGLDESIIES 306

Query: 304 YPKFVLDESLSLPKPNNN-VCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCP 353
           Y K  L ES  LP  N++ VCPICL++Y  KE V+ IP C HCFH  CID WL++  SCP
Sbjct: 307 YKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCP 366

[Close]

BLAST of CsaV3_3G027950 vs. TAIR10
Match: AT1G28040.1 (RING/U-box superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-42
Identity = 103/297 (34.68%), Postives = 160/297 (53.87%), Query Frame = 0


Query: 70  SGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCSSN-YIPY 129
           SG F+V  I+Y  Q+I I+DP+ C+ K++L  N SGSPF    S    F  C +   IP 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 130 WYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE-------- 189
           W    I CLS+ + + +A+S+     +   +C ++K + VP    Y   + E        
Sbjct: 62  WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTVP 121

Query: 190 ---YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC---TDSQGRSRVGANVVSIAM--G 249
               +LL+W +P+C  CE    RC  K+ +S E++       + +SR+   ++++ +  G
Sbjct: 122 WLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLIITLCIIGG 181

Query: 250 VVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQR-TRTMGLNGATIESYPKFVLD 309
           + A  I  + +     F +N RR+ ++ +  + T   +    T GL+ +TIESY K  L 
Sbjct: 182 ITATCIAAIRIYNSERF-VNQRRQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELG 241

Query: 310 ESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKS 349
           ES  LP  N  +CPICL++Y  KE V+ +P C HCFH  CIDEWL++ +SCPVCR S
Sbjct: 242 ESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of CsaV3_3G027950 vs. Swiss-Prot
Match: sp|P0CH02|AT21B_ARATH (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-52
Identity = 140/367 (38.15%), Postives = 196/367 (53.41%), Query Frame = 0


Query: 1   MILLLLLLFFSF-INLATSSELCFDS----HCTGDYQT-IRFPFRIVNGQPKSCGYPGFD 60
           + LL  LLFF F +  A++   C  S    H  G  +  IRFPF         C +P F+
Sbjct: 7   LFLLFFLLFFIFPLRHASNPSKCSSSNSRPHRCGPLEVPIRFPF---------CDHPLFN 66

Query: 61  LSCHPTGEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQ 120
           L C      +L LP SG F VQ IDY  Q+I INDP+ CL K++L  N+SGSPF  +   
Sbjct: 67  LLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSPRFDT 126

Query: 121 TVAFFNCSSNYI-PYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVP--SS 180
              F  C +  + P WY   I CLS+ + + +A+S+  L      +C ++K + VP  S 
Sbjct: 127 LYTFLTCPNELVLPSWY-PSIPCLSNSTSSFFATSNFALAESMLPSCQIVKRIYVPADSP 186

Query: 181 FS---YSSNLWEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVS 240
           F+   +SS L + LLL+W +P+C  CE    RC  K+ +S E++C  ++    +   VV+
Sbjct: 187 FAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASPEVKCFGAKKSGHLSRAVVA 246

Query: 241 --IAMGVVAAVICFLGVLCCLCFKINF--RRRGSSSSIAHWTVSSQRTRTM---GLNGAT 300
             I + ++ AVI F   + C+  +I+   RRR  +   A  TV  Q    M   GL+ +T
Sbjct: 247 VLICLSIIGAVILF---VTCIAIRIHNTPRRRHWAVPAAAATVMQQPREVMATRGLDQST 306

Query: 301 IESYPKFVLDESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKAS 349
           IE Y    L ES   P  N  VCPICL++Y  KE V+ IP C HCFH  CID WL++  S
Sbjct: 307 IEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGS 360

[Close]

BLAST of CsaV3_3G027950 vs. Swiss-Prot
Match: sp|Q9SKK8|ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-52
Identity = 129/370 (34.86%), Postives = 200/370 (54.05%), Query Frame = 0


Query: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60
           ++ L+ L FF  +N A+  + C+   C+ +    RFPF + + QP+SCGY GF+L C   
Sbjct: 9   LLNLIFLFFFPLLN-ASEQKPCYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDD 68

Query: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120
               L LP S  F+V+ IDY  Q IR+NDP+ CL +++L  + SGSPF    S+   F  
Sbjct: 69  ANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLLNFDPSGSPFSFLRSRNYTFLI 128

Query: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSF-------- 180
           C            I CL + + + +      L +M  S+C + K + +P S+        
Sbjct: 129 CPKEANITASFRAIDCLGNTTSSFFVVQFENLGSM-PSSCHIFKILPLPFSWFVAYTTYP 188

Query: 181 --SYSSNLWEYLLLKWENPDCGRCE-SVGQRCEVKSNSSNEIQCTDS--QGRSRVGANVV 240
               S ++W    LKW++PDC  CE     RC  K+N+S++++C  S   G    G  V+
Sbjct: 189 DGQNSRDMW----LKWDSPDCRDCERRTNSRCGFKNNTSHQVECFSSVNPGLHNTGLQVL 248

Query: 241 SI----AMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQ---RTRTMGLNGA 300
            I     +G + A+   +G++ C   +++ + + +  +    +V+SQ       +GL+ +
Sbjct: 249 KIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQQAVVARLSGSVTSQPSNEVARIGLDES 308

Query: 301 TIESYPKFVLDESLSLPKPNNN-VCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLK 350
           TIESY K  L ES  LP  +N+ VCPICL++Y  KE V+ +P C+HCFH  CID WL+L 
Sbjct: 309 TIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLH 368

[Close]

BLAST of CsaV3_3G027950 vs. Swiss-Prot
Match: sp|P0CH01|AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.9e-52
Identity = 130/369 (35.23%), Postives = 197/369 (53.39%), Query Frame = 0


Query: 4   LLLLLFFSFINL-ATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 63
           L L LFF F  L A+  + C  S C  D   +RFPF +++ QP+ CG+ GF+L C  + +
Sbjct: 7   LFLYLFFLFPLLHASHPQQCSSSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPK 66

Query: 64  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 123
             L LP+SG F+V+ IDY+ Q+IR+ DP+ CL +K+L  ++S SPF      +  F +C 
Sbjct: 67  TALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLLTFDISRSPFSALYLVSYTFLSCP 126

Query: 124 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVP---------SSFS 183
           +        D I CL + + +  A++S  L      +C ++KT+ VP         S FS
Sbjct: 127 NEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPSCQIVKTLDVPVSRRVIAKKSRFS 186

Query: 184 YSSN---LWEYLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC--TDSQGRSRVGANVVS 243
              N   LW    LKW++P C  CE    RC  +SN+S +++C   ++ G +     +  
Sbjct: 187 TDVNDKDLW----LKWDSPSCSDCERDFLRCGFRSNTSLQVKCFPFENSGYNTEPQVLKI 246

Query: 244 IAMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTR----TMGLNGATIES 303
           I + ++  +  F     C+   +    R +S    +  +++ +      T GL+ + IES
Sbjct: 247 ILLSIIGPLTIF---ATCIAVGVCTSERFASLIQRNVAIAALQPNEVIVTTGLDESIIES 306

Query: 304 YPKFVLDESLSLPKPNNN-VCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCP 353
           Y K  L ES  LP  N++ VCPICL++Y  KE V+ IP C HCFH  CID WL++  SCP
Sbjct: 307 YKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCP 366

[Close]

BLAST of CsaV3_3G027950 vs. Swiss-Prot
Match: sp|P0CH03|AT21C_ARATH (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-41
Identity = 124/371 (33.42%), Postives = 181/371 (48.79%), Query Frame = 0


Query: 4   LLLLLFFSFINLATSSELCFDS-----HCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCH 63
           +  LLF   +  A++   C  S      C      IRFPF         C +  F+L C 
Sbjct: 11  VFFLLFLVSLRHASNPNNCSSSSSRPLRCGPLEVPIRFPF---------CNHARFNLHCT 70

Query: 64  PTGEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAF 123
              + +L LP SG F+V++IDY  Q+I INDP+ CL K++L  N+SGSPF         F
Sbjct: 71  DLNKTVLELPMSGTFLVRDIDYRRQKIYINDPN-CLAKRLLTFNISGSPFSPHFDILYTF 130

Query: 124 FNCSSNYI-PYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSN 183
            +C +  + P WY   I CLS+ + + +A+S+  L      +C ++K + VP++  +   
Sbjct: 131 LSCPNEVVLPSWY-PSIPCLSNSTSSFFATSNYSLAQSMLPSCQIVKRLHVPATSPFGET 190

Query: 184 LW------EYLLLKWENPDC-GRCESVGQRCEVKSNSSNEIQCTDS----------QGRS 243
            +      + LLL+W  PDC  +C    ++     N SN   C+ S           G  
Sbjct: 191 RFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYN-SNIFSCSFSFLYDSRELFINGNL 250

Query: 244 RVGANVVSIAMGVVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTM---GL 303
             G  V+ I++  V   +       C+  ++    R   S+IA  TV  Q    M   GL
Sbjct: 251 SSGVLVLVISLSAVTVFV----FPTCIAIRLYDSER-FDSAIAAATVMQQPREVMARRGL 310

Query: 304 NGATIESYPKFVLDESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLR 349
           + +TIE++ K  L ES  L   N  VCPICL++Y  KE V+ IP C HCFH  CID WL+
Sbjct: 311 DQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLK 364

[Close]

BLAST of CsaV3_3G027950 vs. Swiss-Prot
Match: sp|Q9C7E9|ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-41
Identity = 103/297 (34.68%), Postives = 160/297 (53.87%), Query Frame = 0


Query: 70  SGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCSSN-YIPY 129
           SG F+V  I+Y  Q+I I+DP+ C+ K++L  N SGSPF    S    F  C +   IP 
Sbjct: 2   SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFYYTFLTCPNEVVIPV 61

Query: 130 WYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE-------- 189
           W    I CLS+ + + +A+S+     +   +C ++K + VP    Y   + E        
Sbjct: 62  WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVPVDVIYKDVITEEKGFSTVP 121

Query: 190 ---YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQC---TDSQGRSRVGANVVSIAM--G 249
               +LL+W +P+C  CE    RC  K+ +S E++       + +SR+   ++++ +  G
Sbjct: 122 WLGNVLLEWSSPNCRGCEKESLRCGFKNKASLEVKYLADPPDETKSRLRPLIITLCIIGG 181

Query: 250 VVAAVICFLGVLCCLCFKINFRRRGSSSSIAHWTVSSQR-TRTMGLNGATIESYPKFVLD 309
           + A  I  + +     F +N RR+ ++ +  + T   +    T GL+ +TIESY K  L 
Sbjct: 182 ITATCIAAIRIYNSERF-VNQRRQNAAITARNTTQQPRGVVVTTGLDQSTIESYKKVELG 241

Query: 310 ESLSLPKPNNNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKS 349
           ES  LP  N  +CPICL++Y  KE V+ +P C HCFH  CIDEWL++ +SCPVCR S
Sbjct: 242 ESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of CsaV3_3G027950 vs. TrEMBL
Match: tr|A0A0A0L8U8|A0A0A0L8U8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603600 PE=4 SV=1)

HSP 1 Score: 748.0 bits (1930), Expect = 9.5e-213
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0


Query: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60
           MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT
Sbjct: 1   MILLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT 60

Query: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120
           GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN
Sbjct: 61  GEPLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFN 120

Query: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE 180
           CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE
Sbjct: 121 CSSNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWE 180

Query: 181 YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF 240
           YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF
Sbjct: 181 YLLLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICF 240

Query: 241 LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN 300
           LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN
Sbjct: 241 LGVLCCLCFKINFRRRGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPN 300

Query: 301 NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS 359
           NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS
Sbjct: 301 NNVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNPS 358

[Close]

BLAST of CsaV3_3G027950 vs. TrEMBL
Match: tr|A0A1S3B3D1|A0A1S3B3D1_CUCME (putative RING-H2 finger protein ATL21A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485698 PE=4 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 3.2e-184
Identity = 314/356 (88.20%), Postives = 333/356 (93.54%), Query Frame = 0


Query: 3   LLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 62
           ++LLLLFFSF NLAT+SELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE
Sbjct: 1   MILLLLFFSFFNLATTSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 60

Query: 63  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 122
            LLHLP SGDFIVQ IDYMHQEIRINDPD CLPKKIL LNLSGSPFVKKNSQ+ AF+NCS
Sbjct: 61  TLLHLPPSGDFIVQTIDYMHQEIRINDPDNCLPKKILSLNLSGSPFVKKNSQSFAFYNCS 120

Query: 123 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWEYL 182
           S+Y+PYWY DPIYCLSS S+TVYASSSP+LINMFESNC MIKTVSVPSS SYSS LW+ L
Sbjct: 121 SSYMPYWYIDPIYCLSSLSYTVYASSSPLLINMFESNCVMIKTVSVPSSSSYSSKLWDDL 180

Query: 183 LLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICFLG 242
           LLKWENPDCGRCES+GQRCE+KSNSSN IQCT+SQGRSRVGANVVSIAMGVVAAVICFLG
Sbjct: 181 LLKWENPDCGRCESIGQRCELKSNSSNGIQCTNSQGRSRVGANVVSIAMGVVAAVICFLG 240

Query: 243 VLCCLCFKINFRR-RGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNN 302
           +LCCLCFKINFRR R +SS+IAHW VSSQ     GLNG TI+SYPKFVLDESLSLPKPNN
Sbjct: 241 LLCCLCFKINFRRTRSNSSNIAHWIVSSQ-----GLNGLTIDSYPKFVLDESLSLPKPNN 300

Query: 303 NVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNP 358
           NVCPICLAQY+PKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSP+EAPPSNP
Sbjct: 301 NVCPICLAQYRPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPLEAPPSNP 351

[Close]

BLAST of CsaV3_3G027950 vs. TrEMBL
Match: tr|A0A1S3B3V5|A0A1S3B3V5_CUCME (RING-H2 finger protein ATL22-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485698 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 2.7e-114
Identity = 222/356 (62.36%), Postives = 235/356 (66.01%), Query Frame = 0


Query: 3   LLLLLLFFSFINLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGE 62
           ++LLLLFFSF NLAT+SELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT  
Sbjct: 1   MILLLLFFSFFNLATTSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPT-- 60

Query: 63  PLLHLPHSGDFIVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS 122
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 123 SNYIPYWYNDPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSFSYSSNLWEYL 182
                                                        VPSS SYSS LW+ L
Sbjct: 121 ---------------------------------------------VPSSSSYSSKLWDDL 180

Query: 183 LLKWENPDCGRCESVGQRCEVKSNSSNEIQCTDSQGRSRVGANVVSIAMGVVAAVICFLG 242
           LLKWENPDCGRCES+GQRCE+KSNSSN IQCT+SQGRSRVGANVVSIAMGVVAAVICFLG
Sbjct: 181 LLKWENPDCGRCESIGQRCELKSNSSNGIQCTNSQGRSRVGANVVSIAMGVVAAVICFLG 240

Query: 243 VLCCLCFKINFRR-RGSSSSIAHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNN 302
           +LCCLCFKINFRR R +SS+IAHW VSSQ     GLNG TI+SYPKFVLDESLSLPKPNN
Sbjct: 241 LLCCLCFKINFRRTRSNSSNIAHWIVSSQ-----GLNGLTIDSYPKFVLDESLSLPKPNN 244

Query: 303 NVCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSNP 358
           NVCPICLAQY+PKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSP+EAPPSNP
Sbjct: 301 NVCPICLAQYRPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPLEAPPSNP 244

[Close]

BLAST of CsaV3_3G027950 vs. TrEMBL
Match: tr|A0A1S3B3U1|A0A1S3B3U1_CUCME (RING-H2 finger protein ATL20-like OS=Cucumis melo OX=3656 GN=LOC103485700 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 8.3e-108
Identity = 203/354 (57.34%), Postives = 257/354 (72.60%), Query Frame = 0


Query: 14  NLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGEPLLHLPHSGDF 73
           NL T+SELCFDS C G++QTIRFPFRI N QPKSCGYPGFDL+CHPTG+PL+HLP SG+F
Sbjct: 20  NLTTTSELCFDSTCNGNFQTIRFPFRIQNKQPKSCGYPGFDLTCHPTGQPLIHLPLSGEF 79

Query: 74  IVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS-SNYIPYWYN- 133
           IVQ IDY +QEI +NDP+ CLP+KIL L L GSPF  KN+    FFNCS S+ IPY +N 
Sbjct: 80  IVQYIDYQNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFNCSGSDEIPYDFNL 139

Query: 134 DPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVP---SSFSYSSNLWEYLLLKWEN 193
           +PI CLS  S+ V+ASSS M+  +  S C ++KTVSVP    S+S+  +L   L L W+ 
Sbjct: 140 NPISCLSGLSYAVFASSSSMVNGILSSRCELVKTVSVPMSSESYSWDLDLRNDLRLVWKK 199

Query: 194 PDCGRCESVGQRCEVKSNSSNEIQC----TDSQGRSRVGANVVSIAMGVVAAVICFLGVL 253
           P+C +CE  G  C +K NS+NEIQC    +   G  R     +SI +G V A +C LG L
Sbjct: 200 PNCKKCELNGGVCGIKPNSTNEIQCKYNTSTPSGMPRGARYAISIGVG-VPATMCVLGFL 259

Query: 254 CCLCFKI-NFRRRGSSSSI-AHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNNN 313
           CC C ++ +   RG +SSI AHW +SS R  TMGL+G TI+SYPK VL ESL LPKP++N
Sbjct: 260 CCFCARVRSSSTRGRNSSIEAHWVISS-RPITMGLDGPTIDSYPKIVLGESLRLPKPSDN 319

Query: 314 VCPICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSN 357
           +CPICL++Y+PKE VK+IP C+H FH+ CIDEWLRL  SCP+CR  P+++PPS+
Sbjct: 320 ICPICLSEYRPKETVKTIPQCRHFFHQDCIDEWLRLNPSCPLCRMPPLKSPPSD 371

[Close]

BLAST of CsaV3_3G027950 vs. TrEMBL
Match: tr|A0A0A0LC42|A0A0A0LC42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603590 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.4e-107
Identity = 201/351 (57.26%), Postives = 252/351 (71.79%), Query Frame = 0


Query: 14  NLATSSELCFDSHCTGDYQTIRFPFRIVNGQPKSCGYPGFDLSCHPTGEPLLHLPHSGDF 73
           NL T+SELC DS C G +QTIRFPFRI N QPKSCGYP FDL+CHP+G+PL+HLP SG+F
Sbjct: 19  NLTTTSELCLDSTCNGSFQTIRFPFRIQNQQPKSCGYPAFDLTCHPSGQPLIHLPFSGEF 78

Query: 74  IVQNIDYMHQEIRINDPDYCLPKKILYLNLSGSPFVKKNSQTVAFFNCS-SNYIPYWYN- 133
           IVQ IDY +QEI +NDP+ CLP+KIL L L GSPF  KN+    FFNCS S+ IPY +N 
Sbjct: 79  IVQYIDYKNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFNCSGSDEIPYDFNL 138

Query: 134 DPIYCLSSHSHTVYASSSPMLINMFESNCAMIKTVSVPSSF-SYSSNLWEYLLLKWENPD 193
           +PI CLS  S+ V+ASSS M+  +  S C ++KTVSVP S  +YS +L   L L W+ P+
Sbjct: 139 NPISCLSGLSYAVFASSSSMVNEILSSRCELVKTVSVPMSLETYSWDLRNDLRLGWKKPN 198

Query: 194 CGRCESVGQRCEVKSNSSNEIQC----TDSQGRSRVGANVVSIAMGVVAAVICFLGVLCC 253
           C +CE  G  C +K NS+NEIQC    +   G +R     +SI +G V   +C LG LCC
Sbjct: 199 CKKCELNGGICGIKPNSTNEIQCKYNTSTQSGMARGARYAISIGVG-VPVTMCVLGFLCC 258

Query: 254 LCFKINFRRRGSSSSI-AHWTVSSQRTRTMGLNGATIESYPKFVLDESLSLPKPNNNVCP 313
           LC ++     G +SSI AHW +SS R  TMGL+G TI+SYPK VL ESL LPKP +N+CP
Sbjct: 259 LCARVRSSTSGRNSSIEAHWVISS-RPITMGLDGPTIDSYPKIVLGESLRLPKPTDNICP 318

Query: 314 ICLAQYQPKEIVKSIPNCQHCFHECCIDEWLRLKASCPVCRKSPIEAPPSN 357
           ICL++Y+PKE VK+IP CQH FH+ CIDEWLRL  SCP+CR  P+++PPS+
Sbjct: 319 ICLSEYRPKETVKTIPQCQHFFHQDCIDEWLRLNPSCPLCRMPPLKSPPSH 367

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151260.2	1.4e-212	100.00	PREDICTED: putative RING-H2 finger protein ATL21B [Cucumis sativus] >KGN58273.1 ...	[more]
XP_008441616.1	4.8e-184	88.20	PREDICTED: putative RING-H2 finger protein ATL21A isoform X1 [Cucumis melo]	[more]
XP_022141098.1	6.4e-128	64.84	putative RING-H2 finger protein ATL21B [Momordica charantia]	[more]
XP_022141168.1	1.8e-114	60.05	putative RING-H2 finger protein ATL21A [Momordica charantia]	[more]
XP_008441617.1	4.0e-114	62.36	PREDICTED: RING-H2 finger protein ATL22-like isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_3G027950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53110.1	2.6e-70	44.41	RING/U-box superfamily protein	[more]
AT2G25410.1	7.5e-54	34.86	RING/U-box superfamily protein	[more]
AT2G46494.1	7.5e-54	38.15	RING/U-box superfamily protein	[more]
AT2G46495.1	2.2e-53	35.23	RING/U-box superfamily protein	[more]
AT1G28040.1	1.0e-42	34.68	RING/U-box superfamily protein	[more]

BLAST of CsaV3_3G027950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH02\|AT21B_ARATH	1.3e-52	38.15	Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B...	[more]
sp\|Q9SKK8\|ATL22_ARATH	1.3e-52	34.86	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]
sp\|P0CH01\|AT21A_ARATH	3.9e-52	35.23	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
sp\|P0CH03\|AT21C_ARATH	1.4e-41	33.42	Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C...	[more]
sp\|Q9C7E9\|ATL20_ARATH	1.8e-41	34.68	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]

BLAST of CsaV3_3G027950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8U8\|A0A0A0L8U8_CUCSA	9.5e-213	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603600 PE=4 SV=1	[more]
tr\|A0A1S3B3D1\|A0A1S3B3D1_CUCME	3.2e-184	88.20	putative RING-H2 finger protein ATL21A isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3B3V5\|A0A1S3B3V5_CUCME	2.7e-114	62.36	RING-H2 finger protein ATL22-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A1S3B3U1\|A0A1S3B3U1_CUCME	8.3e-108	57.34	RING-H2 finger protein ATL20-like OS=Cucumis melo OX=3656 GN=LOC103485700 PE=4 S...	[more]
tr\|A0A0A0LC42\|A0A0A0LC42_CUCSA	1.4e-107	57.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603590 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0030247	polysaccharide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR025287	WAK_GUB
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030247	polysaccharide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G027950.1	CsaV3_3G027950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 304..345 e-value: 1.9E-4 score: 30.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 303..346 e-value: 4.5E-10 score: 39.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 304..346 score: 12.135
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 25..122 e-value: 1.2E-9 score: 38.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 263..350 e-value: 4.8E-18 score: 66.6
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 4..350
None	No IPR available	PANTHER	PTHR14155:SF444	RING-H2 FINGER PROTEIN ATL21A-RELATED	coord: 4..350
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 296..351

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G027950	Bottle gourd (USVL1VR-Ls)	cuclsiB238
CsaV3_3G027950	Melon (DHL92) v3.6.1	cucmedB196
CsaV3_3G027950	Watermelon (Charleston Gray)	cucwcgB247
CsaV3_3G027950	Watermelon (97103) v1	cucwmB263
CsaV3_3G027950	Watermelon (97103) v2	cucwmbB226
CsaV3_3G027950	Wax gourd	cucwgoB297
CsaV3_3G027950	Silver-seed gourd	carcucB1031
CsaV3_3G027950	Cucumber (Gy14) v1	cgycucB016
CsaV3_3G027950	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G027950	Cucurbita maxima (Rimu)	cmacucB0378
CsaV3_3G027950	Cucurbita maxima (Rimu)	cmacucB0492
CsaV3_3G027950	Cucurbita moschata (Rifu)	cmocucB0481
CsaV3_3G027950	Cucurbita pepo (Zucchini)	cpecucB0038
CsaV3_3G027950	Cucurbita pepo (Zucchini)	cpecucB0253
CsaV3_3G027950	Wild cucumber (PI 183967)	cpicucB144