CsaV3_3G027920 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G027920
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 24384320 .. 24384619 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTGAGTACACTGGAACACGTCTCGTCAAGTTTCGTCCTTCTGTGTTCCAAAAATTGGAAACAGGCGTGCGACGTCGTTTTCCGCGTCTCGGTTTAACGCAGCATGTAGCTAAACGACATCGTATAGTTGTGCCTTTTTTTAATTTTTCATTTTGGAAAGTATATGTTTCAGGTCGTTTACAGGGGCAGTGGTAGTGGCAGTGGCAGAGACATTGCCACATTCACATTGGTTCTTTTAACTTACCAAACGGTGTCGTCTCTTCTCATTATTCATCTAATTTCTAATTTTGTTTAA

mRNA sequence

ATGGACTTGAGTACACTGGAACACGTCTCGTCAAGTTTCGTCCTTCTGTGTTCCAAAAATTGGAAACAGGCGTGCGACGTCGTTTTCCGCGTCTCGGTCGTTTACAGGGGCAGTGGTAGTGGCAGTGGCAGAGACATTGCCACATTCACATTGGTTCTTTTAACTTACCAAACGGTGTCGTCTCTTCTCATTATTCATCTAATTTCTAATTTTGTTTAA

Coding sequence (CDS)

ATGGACTTGAGTACACTGGAACACGTCTCGTCAAGTTTCGTCCTTCTGTGTTCCAAAAATTGGAAACAGGCGTGCGACGTCGTTTTCCGCGTCTCGGTCGTTTACAGGGGCAGTGGTAGTGGCAGTGGCAGAGACATTGCCACATTCACATTGGTTCTTTTAACTTACCAAACGGTGTCGTCTCTTCTCATTATTCATCTAATTTCTAATTTTGTTTAA

Protein sequence

MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVSSLLIIHLISNFV

Homology

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BLAST of CsaV3_3G027920 vs. NCBI nr
Match: KGN58270.1 (hypothetical protein Csa_3G603570 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.8e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS 60
          MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS
Sbjct: 1  MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS 60

Query: 61 SLLIIHLISNFV 73
          SLLIIHLISNFV
Sbjct: 61 SLLIIHLISNFV 72

[Close]

BLAST of CsaV3_3G027920 vs. TrEMBL
Match: tr|A0A0A0L8J5|A0A0A0L8J5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603570 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS 60
          MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS
Sbjct: 1  MDLSTLEHVSSSFVLLCSKNWKQACDVVFRVSVVYRGSGSGSGRDIATFTLVLLTYQTVS 60

Query: 61 SLLIIHLISNFV 73
          SLLIIHLISNFV
Sbjct: 61 SLLIIHLISNFV 72

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027920 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58270.1	2.8e-30	100.00	hypothetical protein Csa_3G603570 [Cucumis sativus]	[more]

BLAST of CsaV3_3G027920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G027920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8J5\|A0A0A0L8J5_CUCSA	1.8e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G603570 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G027920.1	CsaV3_3G027920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..72

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G027920	CsGy3G024700	Cucumber (Gy14) v2	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G027920	Silver-seed gourd	carcucB1031
CsaV3_3G027920	Cucumber (Gy14) v1	cgycucB016
CsaV3_3G027920	Cucurbita maxima (Rimu)	cmacucB0378
CsaV3_3G027920	Cucurbita maxima (Rimu)	cmacucB0492
CsaV3_3G027920	Cucurbita moschata (Rifu)	cmocucB0481
CsaV3_3G027920	Cucurbita pepo (Zucchini)	cpecucB0038
CsaV3_3G027920	Cucurbita pepo (Zucchini)	cpecucB0253
CsaV3_3G027920	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G027920	Bottle gourd (USVL1VR-Ls)	cuclsiB238
CsaV3_3G027920	Melon (DHL92) v3.6.1	cucmedB196
CsaV3_3G027920	Watermelon (Charleston Gray)	cucwcgB247
CsaV3_3G027920	Watermelon (97103) v1	cucwmB263
CsaV3_3G027920	Watermelon (97103) v2	cucwmbB226
CsaV3_3G027920	Wax gourd	cucwgoB297