CsaV3_3G027100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G027100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 23477783 .. 23478181 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCAGACAAAACTTTGACCACAAACATAGATATGTAAATTCTGGGGACATATCAACTCACGCTCCAAATATTTGCTAAGTTAAAAAGTATTTTCCTACTCAAAAGATAGAAGATTGAGAGATATCTTATCATTTAGCATTTTTTTCTAAACAAATCAGTTCTACAATTAGGTAATTTCTACGTCAACTCTTCCTCTTTTCTATTTGTTAGGTTTCCTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTATTCTTCTTATATCCCTCTCTTCTTCAACCGCACCCCCCCACTTCCTTCAACGCCAGCTGATCGACACGGACCCCCATTACCCAGTCGCTCGCCGCTTACCTTTCTTTTTCATTTTTGGAAATCTTTGA

mRNA sequence

ATGAAATCAGACAAAACTTTGACCACAAACATAGATATGTTTCCTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTATTCTTCTTATATCCCTCTCTTCTTCAACCGCACCCCCCCACTTCCTTCAACGCCAGCTGATCGACACGGACCCCCATTACCCAGTCGCTCGCCGCTTACCTTTCTTTTTCATTTTTGGAAATCTTTGA

Coding sequence (CDS)

ATGAAATCAGACAAAACTTTGACCACAAACATAGATATGTTTCCTCCTCCGCCGCAGCTGCTCGCCGGAGCGCTGTCTTCACCATCTTATTCTATTCTTCTTATATCCCTCTCTTCTTCAACCGCACCCCCCCACTTCCTTCAACGCCAGCTGATCGACACGGACCCCCATTACCCAGTCGCTCGCCGCTTACCTTTCTTTTTCATTTTTGGAAATCTTTGA

Protein sequence

MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPVARRLPFFFIFGNL
Homology
[Close]
BLAST of CsaV3_3G027100 vs. NCBI nr
Match: KGN58183.1 (hypothetical protein Csa_3G585940 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 3.6e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV 60
          MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV
Sbjct: 1  MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV 60

Query: 61 ARRLPFFFIFGNL 74
          ARRLPFFFIFGNL
Sbjct: 61 ARRLPFFFIFGNL 73

[Close]
BLAST of CsaV3_3G027100 vs. TrEMBL
Match: tr|A0A0A0L8N3|A0A0A0L8N3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G585940 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV 60
          MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV
Sbjct: 1  MKSDKTLTTNIDMFPPPPQLLAGALSSPSYSILLISLSSSTAPPHFLQRQLIDTDPHYPV 60

Query: 61 ARRLPFFFIFGNL 74
          ARRLPFFFIFGNL
Sbjct: 61 ARRLPFFFIFGNL 73

The following BLAST results are available for this feature:
BLAST of CsaV3_3G027100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58183.13.6e-33100.00hypothetical protein Csa_3G585940 [Cucumis sativus][more]
BLAST of CsaV3_3G027100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G027100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G027100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8N3|A0A0A0L8N3_CUCSA2.4e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G585940 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G027100.1CsaV3_3G027100.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G027100CsGy3G024030Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G027100Cucumber (Chinese Long) v3cuccucB017
CsaV3_3G027100Silver-seed gourdcarcucB0399
CsaV3_3G027100Silver-seed gourdcarcucB0467
CsaV3_3G027100Cucumber (Gy14) v2cgybcucB026
CsaV3_3G027100Cucumber (Gy14) v1cgycucB040
CsaV3_3G027100Cucumber (Gy14) v1cgycucB238
CsaV3_3G027100Cucurbita maxima (Rimu)cmacucB0085
CsaV3_3G027100Cucurbita maxima (Rimu)cmacucB0146
CsaV3_3G027100Cucurbita maxima (Rimu)cmacucB0148
CsaV3_3G027100Cucurbita maxima (Rimu)cmacucB0292
CsaV3_3G027100Cucurbita moschata (Rifu)cmocucB0074
CsaV3_3G027100Cucurbita moschata (Rifu)cmocucB0128
CsaV3_3G027100Cucurbita moschata (Rifu)cmocucB0126
CsaV3_3G027100Cucurbita moschata (Rifu)cmocucB0284
CsaV3_3G027100Cucurbita pepo (Zucchini)cpecucB0457
CsaV3_3G027100Cucurbita pepo (Zucchini)cpecucB0760
CsaV3_3G027100Cucurbita pepo (Zucchini)cpecucB0837
CsaV3_3G027100Cucurbita pepo (Zucchini)cpecucB0844
CsaV3_3G027100Wild cucumber (PI 183967)cpicucB028
CsaV3_3G027100Wild cucumber (PI 183967)cpicucB144
CsaV3_3G027100Bottle gourd (USVL1VR-Ls)cuclsiB247
CsaV3_3G027100Bottle gourd (USVL1VR-Ls)cuclsiB256
CsaV3_3G027100Melon (DHL92) v3.5.1cucmeB196
CsaV3_3G027100Melon (DHL92) v3.5.1cucmeB250
CsaV3_3G027100Melon (DHL92) v3.6.1cucmedB187
CsaV3_3G027100Melon (DHL92) v3.6.1cucmedB233
CsaV3_3G027100Watermelon (Charleston Gray)cucwcgB240
CsaV3_3G027100Watermelon (Charleston Gray)cucwcgB255
CsaV3_3G027100Watermelon (97103) v1cucwmB255
CsaV3_3G027100Watermelon (97103) v1cucwmB289
CsaV3_3G027100Watermelon (97103) v2cucwmbB219
CsaV3_3G027100Watermelon (97103) v2cucwmbB234
CsaV3_3G027100Wax gourdcucwgoB289