CsaV3_3G026500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G026500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA topoisomerase 2-binding protein 1
Locationchr3 : 22625867 .. 22626196 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

mRNA sequence

CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

Coding sequence (CDS)

CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

Protein sequence

HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH
Homology
[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: KGN58124.1 (hypothetical protein Csa_3G529590 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 3.2e-54
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 60
           HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA
Sbjct: 21  HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 80

Query: 61  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDP+QNAP+DYHVISSANH
Sbjct: 81  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPAQNAPDDYHVISSANH 130

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_011659866.1 (PREDICTED: uncharacterized protein LOC105436310, partial [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-32
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 34  SLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCD 93
           SLVGLPSTQKVIEATLQ+LKPKPF GANVF+SRNLVA EMFD FHD  KQNGAEVFLCCD
Sbjct: 39  SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 98

Query: 94  PSQNAPNDYHVISSANH 111
           PSQNAPNDYHVISSA+H
Sbjct: 99  PSQNAPNDYHVISSADH 115

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_016899869.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_016899870.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_016899871.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_016899872.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_022134020.1 (DNA topoisomerase 2-binding protein 1 [Momordica charantia] >XP_022134028.1 DNA topoisomerase 2-binding protein 1 [Momordica charantia] >XP_022134035.1 DNA topoisomerase 2-binding protein 1 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPK F GANVF+SRNLVAPE+FDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKTFAGANVFMSRNLVAPEIFDAVHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. TAIR10
Match: AT1G77320.1 (transcription coactivators)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 57  FVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           F GANVF+SRNLV PE+FD   D FK NGAE+FLCCDPS++ P+D+HVI+S +H
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDFHVIASPDH 60

[Close]
BLAST of CsaV3_3G026500 vs. TrEMBL
Match: tr|A0A0A0LB04|A0A0A0LB04_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 60
           HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA
Sbjct: 21  HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 80

Query: 61  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDP+QNAP+DYHVISSANH
Sbjct: 81  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPAQNAPDDYHVISSANH 130

[Close]
BLAST of CsaV3_3G026500 vs. TrEMBL
Match: tr|A0A1S4DV57|A0A1S4DV57_CUCME (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.3e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. TrEMBL
Match: tr|A0A1U8AZU1|A0A1U8AZU1_NELNU (DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104605836 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 52  LKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           + PK F GANVF+SRNLV PE+FDA HD  KQNGAEVFLCCDPS+N PNDYHVISS +H
Sbjct: 7   MMPKAFKGANVFMSRNLVPPEIFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSPDH 65

[Close]
BLAST of CsaV3_3G026500 vs. TrEMBL
Match: tr|A0A1U8ANF1|A0A1U8ANF1_NELNU (DNA topoisomerase 2-binding protein 1-A isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104605836 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.9e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 52  LKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           + PK F GANVF+SRNLV PE+FDA HD  KQNGAEVFLCCDPS+N PNDYHVISS +H
Sbjct: 7   MMPKAFKGANVFMSRNLVPPEIFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSPDH 65

The following BLAST results are available for this feature:
BLAST of CsaV3_3G026500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58124.13.2e-5498.18hypothetical protein Csa_3G529590 [Cucumis sativus][more]
XP_011659866.15.9e-3289.61PREDICTED: uncharacterized protein LOC105436310, partial [Cucumis sativus][more]
XP_016899869.11.1e-2285.00PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_0... [more]
XP_016899871.11.1e-2285.00PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_0... [more]
XP_022134020.12.7e-2181.67DNA topoisomerase 2-binding protein 1 [Momordica charantia] >XP_022134028.1 DNA ... [more]
BLAST of CsaV3_3G026500 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G77320.11.7e-1766.67transcription coactivators[more]
BLAST of CsaV3_3G026500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G026500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB04|A0A0A0LB04_CUCSA2.1e-5498.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1[more]
tr|A0A1S4DV57|A0A1S4DV57_CUCME7.3e-2385.00DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S4DV59|A0A1S4DV59_CUCME7.3e-2385.00DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1U8AZU1|A0A1U8AZU1_NELNU2.9e-1976.27DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Nelumbo nucifera OX=4432 G... [more]
tr|A0A1U8ANF1|A0A1U8ANF1_NELNU2.9e-1976.27DNA topoisomerase 2-binding protein 1-A isoform X1 OS=Nelumbo nucifera OX=4432 G... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G026500.1CsaV3_3G026500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G026500Silver-seed gourdcarcucB0399
CsaV3_3G026500Silver-seed gourdcarcucB0467
CsaV3_3G026500Cucumber (Gy14) v2cgybcucB117
CsaV3_3G026500Cucumber (Gy14) v1cgycucB464
CsaV3_3G026500Cucurbita maxima (Rimu)cmacucB0148
CsaV3_3G026500Cucurbita maxima (Rimu)cmacucB0292
CsaV3_3G026500Cucurbita moschata (Rifu)cmocucB0126
CsaV3_3G026500Cucurbita moschata (Rifu)cmocucB0284
CsaV3_3G026500Cucurbita pepo (Zucchini)cpecucB0760
CsaV3_3G026500Cucurbita pepo (Zucchini)cpecucB0837
CsaV3_3G026500Wild cucumber (PI 183967)cpicucB144
CsaV3_3G026500Melon (DHL92) v3.5.1cucmeB250
CsaV3_3G026500Melon (DHL92) v3.6.1cucmedB233
CsaV3_3G026500Watermelon (Charleston Gray)cucwcgB240
CsaV3_3G026500Watermelon (97103) v1cucwmB246
CsaV3_3G026500Watermelon (97103) v2cucwmbB210
CsaV3_3G026500Wax gourdcucwgoB318