CsaV3_3G026370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G026370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 22487396 .. 22487701 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCAGTTATTTAAGAGCTAAAAAAGCTCTTTCCCAACCAAAAAAGGCATAATGAACTACTAGAATACGACCCAAGCAAGCCAACCTATTGTCCACGAATGCAGTTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTAGCTTTTGAAGACACATAA

mRNA sequence

ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTAGCTTTTGAAGACACATAA

Coding sequence (CDS)

ATGGCGCTTCGGATCGAGTCGAAGGTCACCACCCCAAGGATAGGGATTCTCTTCAGAGGCAAGCCACTGGCTCGACTCTTTCTTTCTCCCTTTCATTCTTTCATCTCTTTCGGAATGAAAATAAGGAAGAGGAATTTAGTTACTCGATGCCCGTCATTCAAGGCGAGGCCAATGCTTGTCCCATCTGTAGCTTTTGAAGACACATAA

Protein sequence

MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLVPSVAFEDT
Homology
[Close]
BLAST of CsaV3_3G026370 vs. NCBI nr
Match: KGN58105.1 (hypothetical protein Csa_3G511980 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.5e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV 60
          MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV
Sbjct: 1  MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV 60

Query: 61 PSVAFEDT 69
          PSVAFEDT
Sbjct: 61 PSVAFEDT 68

[Close]
BLAST of CsaV3_3G026370 vs. TrEMBL
Match: tr|A0A0A0L846|A0A0A0L846_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511980 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.0e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV 60
          MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV
Sbjct: 1  MALRIESKVTTPRIGILFRGKPLARLFLSPFHSFISFGMKIRKRNLVTRCPSFKARPMLV 60

Query: 61 PSVAFEDT 69
          PSVAFEDT
Sbjct: 61 PSVAFEDT 68

The following BLAST results are available for this feature:
BLAST of CsaV3_3G026370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58105.14.5e-30100.00hypothetical protein Csa_3G511980 [Cucumis sativus][more]
BLAST of CsaV3_3G026370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G026370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G026370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L846|A0A0A0L846_CUCSA3.0e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G511980 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G026370.1CsaV3_3G026370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G026370CSPI03G24620Wild cucumber (PI 183967)cpicucB144
CsaV3_3G026370CsGy3G023370Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G026370Silver-seed gourdcarcucB0467
CsaV3_3G026370Cucumber (Gy14) v1cgycucB464
CsaV3_3G026370Cucurbita maxima (Rimu)cmacucB0292
CsaV3_3G026370Cucurbita moschata (Rifu)cmocucB0284
CsaV3_3G026370Cucurbita pepo (Zucchini)cpecucB0760
CsaV3_3G026370Watermelon (Charleston Gray)cucwcgB240
CsaV3_3G026370Watermelon (97103) v1cucwmB246
CsaV3_3G026370Watermelon (97103) v2cucwmbB210
CsaV3_3G026370Wax gourdcucwgoB318