CsaV3_3G025140 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G025140
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr3 : 22064175 .. 22064355 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

mRNA sequence

ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

Coding sequence (CDS)

ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

Protein sequence

MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPKX

Homology

[Close]

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-20
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           ME+GK+  I++W++P S+T+LRSFLGLANYYRRFVEGFSKR  PLTDLLKK+ KWNWTP+
Sbjct: 794 MEDGKVKAIQEWKIPTSITELRSFLGLANYYRRFVEGFSKRTGPLTDLLKKNQKWNWTPE 853

[Close]

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: XP_022154926.1 (uncharacterized protein LOC111022072 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           ME+GK+  I+DW+V  S+T+LRSFLGLANYYRRFVEGFSK+A PLT+LLKK N WN TP+
Sbjct: 48  MEDGKVKAIQDWKVLSSITELRSFLGLANYYRRFVEGFSKKAGPLTELLKKSNTWNCTPE 107

[Close]

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: XP_022975516.1 (uncharacterized protein LOC111474945, partial [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-17
Identity = 41/58 (70.69%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M+  KI  I++W+VP SV+DLRSFLGLANYYRRFVEGFS+RA+PLT+LLKKD+ W+W+
Sbjct: 767 MDSDKIKAIQEWKVPTSVSDLRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHTWSWS 824

[Close]

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: CAN76063.1 (hypothetical protein VITISV_040632 [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M++GK+  I +W VP  VT+LRSFLGLANYYRRF++G+SK  SPLTDLLKKDN+W+W+
Sbjct: 778 MDKGKVQAIMEWTVPSKVTELRSFLGLANYYRRFIKGYSKTVSPLTDLLKKDNQWDWS 835

[Close]

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: XP_021600680.1 (uncharacterized protein LOC110606236 [Manihot esculenta])

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           M+E KI  I++WEVP+ VT+LRSFLGLANYYRRF+EG+S  A+PLTDLLKKD  W+W  K
Sbjct: 852 MDEAKIQAIQEWEVPKKVTELRSFLGLANYYRRFIEGYSALAAPLTDLLKKDRPWDWGDK 911

[Close]

BLAST of CsaV3_3G025140 vs. TAIR10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   EEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           +  K+  +  W  P++ T+LR FLGL  YYRRFV+ + K   PLT+LLKK N   WT
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWT 102

[Close]

BLAST of CsaV3_3G025140 vs. Swiss-Prot
Match: sp|P92523|M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-09
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 2   EEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           +  K+  +  W  P++ T+LR FLGL  YYRRFV+ + K   PLT+LLKK N   WT
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWT 102

[Close]

BLAST of CsaV3_3G025140 vs. Swiss-Prot
Match: sp|Q9UR07|TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of CsaV3_3G025140 vs. Swiss-Prot
Match: sp|P0CT41|TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of CsaV3_3G025140 vs. Swiss-Prot
Match: sp|P0CT34|TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of CsaV3_3G025140 vs. Swiss-Prot
Match: sp|P0CT35|TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of CsaV3_3G025140 vs. TrEMBL
Match: tr|A5AUJ7|A5AUJ7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040632 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M++GK+  I +W VP  VT+LRSFLGLANYYRRF++G+SK  SPLTDLLKKDN+W+W+
Sbjct: 778 MDKGKVQAIMEWTVPSKVTELRSFLGLANYYRRFIKGYSKTVSPLTDLLKKDNQWDWS 835

[Close]

BLAST of CsaV3_3G025140 vs. TrEMBL
Match: tr|A5C4Y8|A5C4Y8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_025158 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 2   EEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNW 58
           ++GK+  I++W VP  VT LRSFLGLANYYRRF++G+SKR SPLTDLLKKDN W+W
Sbjct: 724 DKGKVQAIKEWTVPPKVTKLRSFLGLANYYRRFIKGYSKRVSPLTDLLKKDNSWDW 779

[Close]

BLAST of CsaV3_3G025140 vs. TrEMBL
Match: tr|A5CBC2|A5CBC2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010464 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M++GK+  I +W VP  VT+LRSFLGLANYYRRF++G+SKR SP T LLKKDN W+W+
Sbjct: 753 MDKGKVQAIMEWTVPTKVTELRSFLGLANYYRRFIKGYSKRVSPFTKLLKKDNSWDWS 810

[Close]

BLAST of CsaV3_3G025140 vs. TrEMBL
Match: tr|A5BVZ5|A5BVZ5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028502 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M++GK+  I +W  P  VT+LRSFLGLANYYRRF++G+SK  SPLTDLLKKDN+W+W+
Sbjct: 657 MDKGKVHAIMEWIAPSKVTELRSFLGLANYYRRFIKGYSKTVSPLTDLLKKDNQWDWS 714

[Close]

BLAST of CsaV3_3G025140 vs. TrEMBL
Match: tr|A5AXU3|A5AXU3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031913 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-16
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           M++GK+  I +W V   VT+LRSFLGLANYYRRF++G+SK  SPLTDLLKKDN+W+W+
Sbjct: 753 MDKGKVQAIMEWTVXSKVTELRSFLGLANYYRRFIKGYSKTVSPLTDLLKKDNQWDWS 810

The following BLAST results are available for this feature:

BLAST of CsaV3_3G025140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	2.9e-20	73.33	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
XP_022154926.1	1.0e-17	71.67	uncharacterized protein LOC111022072 [Momordica charantia]	[more]
XP_022975516.1	3.9e-17	70.69	uncharacterized protein LOC111474945, partial [Cucurbita maxima]	[more]
CAN76063.1	6.6e-17	67.24	hypothetical protein VITISV_040632 [Vitis vinifera]	[more]
XP_021600680.1	6.6e-17	68.33	uncharacterized protein LOC110606236 [Manihot esculenta]	[more]

BLAST of CsaV3_3G025140 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	4.3e-10	47.37	DNA/RNA polymerases superfamily protein	[more]

BLAST of CsaV3_3G025140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92523\|M860_ARATH	7.7e-09	47.37	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9UR07\|TF211_SCHPO	2.2e-08	45.10	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
sp\|P0CT41\|TF212_SCHPO	2.2e-08	45.10	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
sp\|P0CT34\|TF21_SCHPO	2.2e-08	45.10	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
sp\|P0CT35\|TF22_SCHPO	2.2e-08	45.10	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CsaV3_3G025140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5AUJ7\|A5AUJ7_VITVI	4.4e-17	67.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_040632 PE=4 SV=1	[more]
tr\|A5C4Y8\|A5C4Y8_VITVI	7.4e-17	69.64	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_025158 PE=4 SV=1	[more]
tr\|A5CBC2\|A5CBC2_VITVI	2.2e-16	65.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010464 PE=4 SV=1	[more]
tr\|A5BVZ5\|A5BVZ5_VITVI	2.8e-16	65.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_028502 PE=4 SV=1	[more]
tr\|A5AXU3\|A5AXU3_VITVI	3.7e-16	65.52	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031913 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G025140.1	CsaV3_3G025140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 3..61 e-value: 4.4E-21 score: 76.7
None	No IPR available	PANTHER	PTHR24559:SF250	SUBFAMILY NOT NAMED	coord: 3..59
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 3..59
None	No IPR available	SUPERFAMILY	SSF56672	DNA/RNA polymerases	coord: 3..60

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G025140	Wax gourd	cucwgoB275
CsaV3_3G025140	Cucumber (Chinese Long) v3	cuccucB162
CsaV3_3G025140	Silver-seed gourd	carcucB0135
CsaV3_3G025140	Silver-seed gourd	carcucB0227
CsaV3_3G025140	Silver-seed gourd	carcucB0780
CsaV3_3G025140	Silver-seed gourd	carcucB1072
CsaV3_3G025140	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G025140	Cucumber (Gy14) v2	cgybcucB334
CsaV3_3G025140	Cucumber (Gy14) v1	cgycucB548
CsaV3_3G025140	Cucurbita maxima (Rimu)	cmacucB0284
CsaV3_3G025140	Cucurbita maxima (Rimu)	cmacucB0427
CsaV3_3G025140	Cucurbita maxima (Rimu)	cmacucB0540
CsaV3_3G025140	Cucurbita maxima (Rimu)	cmacucB1059
CsaV3_3G025140	Cucurbita moschata (Rifu)	cmocucB0275
CsaV3_3G025140	Cucurbita moschata (Rifu)	cmocucB0422
CsaV3_3G025140	Cucurbita moschata (Rifu)	cmocucB0524
CsaV3_3G025140	Cucurbita moschata (Rifu)	cmocucB1042
CsaV3_3G025140	Cucurbita pepo (Zucchini)	cpecucB0156
CsaV3_3G025140	Cucurbita pepo (Zucchini)	cpecucB0382
CsaV3_3G025140	Cucurbita pepo (Zucchini)	cpecucB0696
CsaV3_3G025140	Cucurbita pepo (Zucchini)	cpecucB0752
CsaV3_3G025140	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G025140	Wild cucumber (PI 183967)	cpicucB154
CsaV3_3G025140	Wild cucumber (PI 183967)	cpicucB399
CsaV3_3G025140	Bottle gourd (USVL1VR-Ls)	cuclsiB198
CsaV3_3G025140	Bottle gourd (USVL1VR-Ls)	cuclsiB255
CsaV3_3G025140	Melon (DHL92) v3.5.1	cucmeB191
CsaV3_3G025140	Melon (DHL92) v3.5.1	cucmeB220
CsaV3_3G025140	Melon (DHL92) v3.6.1	cucmedB182
CsaV3_3G025140	Melon (DHL92) v3.6.1	cucmedB213
CsaV3_3G025140	Watermelon (Charleston Gray)	cucwcgB186
CsaV3_3G025140	Watermelon (Charleston Gray)	cucwcgB263
CsaV3_3G025140	Watermelon (97103) v1	cucwmB198
CsaV3_3G025140	Watermelon (97103) v1	cucwmB226
CsaV3_3G025140	Watermelon (97103) v2	cucwmbB243
CsaV3_3G025140	Watermelon (97103) v2	cucwmbB258