CsaV3_3G024960 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G024960
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr3 : 21923335 .. 21925708 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACAGGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAATACAAGGCTAGATCTTTCATATGCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATAGGAAAGGCCCCAGAGAATTCAATATATTCGGTTACTCTGACGGTGATTTAGCCATTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAATGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAAACGGTGGCACTCTCATCTTGCGATGCCAAGTTCATTGCAACCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTGTTAGCGAGATAGTCGGAATGGAGCCAAGGCCGGTAACATTATTTGTGGACAACAAATCGGCGATAGCTCTCATGAAGAATCTCGTATTTCATGGTCGCAGCAAGCACATAGATACACATTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGAAGAACAACGAGTCGATGTTCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATACGTCAGCTACTTGGTGTTCGTAATTTAGAATCATGTCAGGATTAGGGGGTAGTGTGGGCTATTATAATCTATCATGATCTCCCTTTAGCAAGCACTAAGTTAGTGGGTTACTAATTTTTGCTTCCTTTTTAGACTATGAATATTAGTCCATTAAATTGAATAAATGCAAGAAGTTCCATTTAATTTTCTTTCCCTCTTGGCAATATATCTTACAAAATATTTATATTAGTTTTCTTCAAAAAGAGTATGTGAGATTTTACAGATCATTTGTTTTAAAACCAACATATTAAAAAGAACGAACCCACGCTATAATCTAATATAGATGTGAAATTTTTACTATTTTATTCTAGTGGAACCTGTAAAAGGGATATATCATTATTGTTGAGTATGTTTATAAATCAAAATTTTATTGTGGTAAAAGAAAGACAATGCAATACTTCACTCTAACAGTAGTAGCAGAGCTAGCAAAGATTTCAATGTGTGTGTATGAACTCCAATGTATATTAGCAAGTCTCTCCAAGTCTACACATAATATTATGTAGGTGAAGATGATACTTTGCCAATACTTCACGTAAGTATCACCAGACGAAATATATGTTAAAAGTTAGAGAAAAAAAAAAAGATTGAAACAAGACTTGAAAAAATATAGAATCATTCTAGTCATTGACTTAATCAGATCGTCACCACATCCTAACTTGTATAGAATAAAGAACCAAAGTCCCTCTCACCATAATTATGAGAGAAAAATGTAACTTTTAAGTCATTCTACCTGTAAATATATATACATGTTATAATAAGTGAAATTTTCAAATGTAGTAAAATAAATAAATAAATAATGACATGGATAGAAGCCTACAAGTATCTATCAATGTTCTATCATTCATAGAATCTTAAATTCTTTTATAGTTTGTAAATATTTTGTCAAGTTTGACAACTTTCCCTTGTAATAACGGCACATGAAGTAACTTGAACTTGAATCAATAACTTCTAGCTTCTATATCTTACAATTTTCTAATTTTAACTTTTGGAATCAAAACTATTTTTCTGTGTTTTGCATTTTTTTTTTCCTTGTATGATCCTCAAATTGTAAATTTACCATTGAATCTCATAACCTTATGTGATGAATTTTTTTTTTAATGGTCAGATTTTGACATCTACAATAATACTACATTCTAATTAACTAGGTATAATATGTATCTAGCTAGCTAGTTAAGTCAAACCCAACAAAAATTTCTTATTTATGAGGATGGTATGGTGCCATCAATGATACGATCTATTTTTAAGTAGAAAGACAAAGTTTATATAAATGTAATTGTAGCTACATTATTACAAAATGATGAACAAATAGCAAACTTACCTTAATTATTACAACAACATATAACCCATATTCAATTTCATTTATTGGTGAATCTATGCCCTTAGTTTTGTCATTATTGCCATTGAGGACATATATTTTCATCTTTTTCATGTGTATTTGTGAAGCTACTTTCCCTCTTTCCATTAATTTTTTTTCCTTAAAATTTCCTCTGACATTTTTGTCCTTTAATTGATTCAAGTTTTTTTTTTTCTTCTGATTTTCAAGAAGTCTTGTGTTGATTTATCTGAATTTCCATTGCCTTGTCTTTCTCTCAATTTGTCTTTCCTCTCATTAGCTGATGAGATGATTAGACATTACAAGCTTTAA

mRNA sequence

ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACAGGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAATACAAGGCTAGATCTTTCATATGCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATAGGAAAGGCCCCAGAGAATTCAATATATTCGGTTACTCTGACGGTGATTTAGCCATTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAATGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAAACGGTGGCACTCTCATCTTGCGATGCCAAGTTCATTGCAACCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTAAGTCTTGTGTTGATTTATCTGAATTTCCATTGCCTTGTCTTTCTCTCAATTTGTCTTTCCTCTCATTAGCTGATGAGATGATTAGACATTACAAGCTTTAA

Coding sequence (CDS)

ATGACTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACAGGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAATACAAGGCTAGATCTTTCATATGCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATAGGAAAGGCCCCAGAGAATTCAATATATTCGGTTACTCTGACGGTGATTTAGCCATTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAATGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAAACGGTGGCACTCTCATCTTGCGATGCCAAGTTCATTGCAACCACTACCGCAGCTTGCCAAGCATTGTGGTTAAGATGCCTTAAGTCTTGTGTTGATTTATCTGAATTTCCATTGCCTTGTCTTTCTCTCAATTTGTCTTTCCTCTCATTAGCTGATGAGATGATTAGACATTACAAGCTTTAA

Protein sequence

MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYATTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKSCVDLSEFPLPCLSLNLSFLSLADEMIRHYKL

Homology

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BLAST of CsaV3_3G024960 vs. NCBI nr
Match: ABF94034.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 200.3 bits (508), Expect = 5.7e-48
Identity = 98/161 (60.87%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M +CN+   P++P++QL KD EG P+DATEYR I+G LRYLL+TR DLSYA         
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              T MH+K VKQILRY++GT+ +GL Y  G     I GY+D DLA DLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
            +N+SLV+W+SQKQKTVALSSC+A+F+A TTAACQALWLR L
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLL 1315

[Close]

BLAST of CsaV3_3G024960 vs. NCBI nr
Match: BAF22809.1 (Os08g0125300 [Oryza sativa Japonica Group] >BAG92574.1 unnamed protein product [Oryza sativa Japonica Group] >BAT03649.1 Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 198.0 bits (502), Expect = 2.8e-47
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TR DLSYA         
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              TTMH K VK ILRYL+GT+  GL +  G    +I G++D DLA D+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
            +N SLVSW SQKQKTVALSSC+A+F+A T AAC ALWLR L S
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLS 1335

[Close]

BLAST of CsaV3_3G024960 vs. NCBI nr
Match: EEC84282.1 (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 198.0 bits (502), Expect = 2.8e-47
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TR DLSYA         
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              TTMH K VK ILRYL+GT+  GL +  G    +I G++D DLA D+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
            +N SLVSW SQKQKTVALSSC+A+F+A T AAC ALWLR L S
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLS 1335

[Close]

BLAST of CsaV3_3G024960 vs. NCBI nr
Match: ABB47537.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 97/161 (60.25%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M DCN+T  P+E ++QLHK  EG+ +D TEYR ++GCLRYLL+T+ DLSYA         
Sbjct: 936  MLDCNSTSIPIEHRSQLHKVAEGSTVDPTEYRRVIGCLRYLLHTQPDLSYAVGVVSKFME 995

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              T MH+K VKQILRYL+GTI+ GL +  G     I G++D DLA D D R+STSGM FY
Sbjct: 996  QLTVMHFKAVKQILRYLKGTINCGLMFSGGNDAVEITGFTDSDLAGDSDDRRSTSGMAFY 1055

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
             N SLVSW+SQKQKTVALSSC+A+F+A T AACQALWLR L
Sbjct: 1056 FNSSLVSWSSQKQKTVALSSCEAEFMAATAAACQALWLRGL 1096

[Close]

BLAST of CsaV3_3G024960 vs. NCBI nr
Match: CAE04421.2 (OSJNBb0040D15.11 [Oryza sativa Japonica Group])

HSP 1 Score: 190.7 bits (483), Expect = 4.5e-45
Identity = 96/161 (59.63%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 1   MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
           M DCN+T  P+E ++QLHKD EG+ +D TEYR ++GCLRYLL+TR DLSYA         
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFME 154

Query: 61  --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
             T MH+K +KQILRYL+GTI+ GL +  G     I G++D DLA D D  +STSGM FY
Sbjct: 155 RPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRSTSGMAFY 214

Query: 121 LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
            N SLVSW+SQKQKTVALSSC+A+F+A T AAC ALWLR L
Sbjct: 215 FNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGL 255

[Close]

BLAST of CsaV3_3G024960 vs. TAIR10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 4   CNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYATT---------- 63
           C  +  PM+P         G  +DA  YR ++G L YL  TRLD+S+A            
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410

Query: 64  -MHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFYLNE 123
             H + V +IL Y++GT+  GL Y     E  +  +SD       D R+ST+G   +L  
Sbjct: 411 LAHQQAVMKILHYIKGTVGQGLFY-SSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGT 470

Query: 124 SLVSWNSQKQKTVALSSCDAKFIATTTAACQALWL 148
           SL+SW S+KQ+ V+ SS +A++ A + A  + +WL
Sbjct: 471 SLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 504

[Close]

BLAST of CsaV3_3G024960 vs. TAIR10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-17
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 1   MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
           M DC     P+  K          P D +++RSIVG L+YL  TR D+SYA         
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
             T   + ++K++LRY++GTI  GL   K  +  N+  + D D A     R+ST+G   +
Sbjct: 131 EPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-LNVQAFCDSDWAGCTSTRRSTTGFCTF 190

Query: 121 LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
           L  +++SW++++Q TV+ SS + ++ A    A +  W    +S
Sbjct: 191 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSSASRS 231

[Close]

BLAST of CsaV3_3G024960 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 60/153 (39.22%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 6    ATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA-----------TTM 65
            AT     PK  LH   +  P D TEYR IVG L+YL  TR DLSYA           T  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 66   HYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFYLNESL 125
            H+  +K++LRYL GT   G+  +KG    ++  YSD D A D D   ST+G   YL    
Sbjct: 1265 HWNALKRVLRYLAGTPDHGIFLKKG-NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHP 1324

Query: 126  VSWNSQKQKTVALSSCDAKFIATTTAACQALWL 148
            +SW+S+KQK V  SS +A++ +    + +  W+
Sbjct: 1325 ISWSSKKQKGVVRSSTEAEYRSVANTSSELQWI 1354

[Close]

BLAST of CsaV3_3G024960 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-18
Identity = 57/149 (38.26%), Postives = 79/149 (53.02%), Query Frame = 0


Query: 10   PMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA-----------TTMHYKV 69
            PM P  +L         D TEYR IVG L+YL  TR D+SYA           T  H + 
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1283

Query: 70   VKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFYLNESLVSWN 129
            +K+ILRYL GT + G+  +KG    ++  YSD D A D D   ST+G   YL    +SW+
Sbjct: 1284 LKRILRYLAGTPNHGIFLKKG-NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWS 1343

Query: 130  SQKQKTVALSSCDAKFIATTTAACQALWL 148
            S+KQK V  SS +A++ +    + +  W+
Sbjct: 1344 SKKQKGVVRSSTEAEYRSVANTSSEMQWI 1371

[Close]

BLAST of CsaV3_3G024960 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-16
Identity = 66/198 (33.33%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQ---LHKDREGAPIDATEYRSIVGCLRY-LLNTRLDLSYATTM-- 60
            M +CNA   P+  K     L+ D +      T  RS++GCL Y +L TR DL+ A  +  
Sbjct: 1152 MENCNAVSTPLPSKINYELLNSDED----CNTPCRSLIGCLMYIMLCTRPDLTTAVNILS 1211

Query: 61   ---------HYKVVKQILRYLRGTIHFGLTYRKG-PREFNIFGYSDGDLAIDLDGRKSTS 120
                      ++ +K++LRYL+GTI   L ++K    E  I GY D D A     RKST+
Sbjct: 1212 RYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTT 1271

Query: 121  GMTFYLNE-SLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKSCVDLS-EFPLP 180
            G  F + + +L+ WN+++Q +VA SS +A+++A   A  +ALWL+ L + +++  E P+ 
Sbjct: 1272 GYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIK 1331

[Close]

BLAST of CsaV3_3G024960 vs. Swiss-Prot
Match: sp|P92519|M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 1   MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
           M DC     P+  K          P D +++RSIVG L+YL  TR D+SYA         
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
             T   + ++K++LRY++GTI  GL   K  +  N+  + D D A     R+ST+G   +
Sbjct: 131 EPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK-LNVQAFCDSDWAGCTSTRRSTTGFCTF 190

Query: 121 LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
           L  +++SW++++Q TV+ SS + ++ A    A +  W    +S
Sbjct: 191 LGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSSASRS 231

[Close]

BLAST of CsaV3_3G024960 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 31   YRSIVGCLRY-LLNTRLDLSYATTM-----------HYKVVKQILRYLRGTIHFGLTYRK 90
            Y S VG L Y ++ TR D+++A  +           H++ VK ILRYLRGT    L +  
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-- 1170

Query: 91   GPREFNIFGYSDGDLAIDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCDAKFIATT 149
            G  +  + GY+D D+A D+D RKS++G  F  +   +SW S+ QK VALS+ +A++IA T
Sbjct: 1171 GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAAT 1230

[Close]

BLAST of CsaV3_3G024960 vs. TrEMBL
Match: tr|A0A0A9FJ50|A0A0A9FJ50_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 101/161 (62.73%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
           M D N TKYPME KAQ+HKD +G P+DATEYR +VGCLRYLL+TR DLS+A         
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
             T MH K+VKQ+LRYL+GTI  GL Y +G  +  + G++D DL  DLD RKST GM FY
Sbjct: 141 RPTVMHQKLVKQMLRYLKGTIDLGLVYVQGTGKEVLTGFTDSDLGGDLDDRKSTGGMAFY 200

Query: 121 LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
           LN +LVSW SQKQKTVALSSC+A+FIA  TAACQALWL+ +
Sbjct: 201 LNNNLVSWTSQKQKTVALSSCEAEFIAAATAACQALWLKSM 241

[Close]

BLAST of CsaV3_3G024960 vs. TrEMBL
Match: tr|Q10RM4|Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.8e-48
Identity = 98/161 (60.87%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M +CN+   P++P++QL KD EG P+DATEYR I+G LRYLL+TR DLSYA         
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              T MH+K VKQILRY++GT+ +GL Y  G     I GY+D DLA DLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
            +N+SLV+W+SQKQKTVALSSC+A+F+A TTAACQALWLR L
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLL 1315

[Close]

BLAST of CsaV3_3G024960 vs. TrEMBL
Match: tr|Q0J8A6|Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TR DLSYA         
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              TTMH K VK ILRYL+GT+  GL +  G    +I G++D DLA D+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
            +N SLVSW SQKQKTVALSSC+A+F+A T AAC ALWLR L S
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLS 1335

[Close]

BLAST of CsaV3_3G024960 vs. TrEMBL
Match: tr|B8BDZ6|B8BDZ6_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/163 (60.74%), Postives = 117/163 (71.78%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TR DLSYA         
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              TTMH K VK ILRYL+GT+  GL +  G    +I G++D DLA D+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCLKS 153
            +N SLVSW SQKQKTVALSSC+A+F+A T AAC ALWLR L S
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLS 1335

[Close]

BLAST of CsaV3_3G024960 vs. TrEMBL
Match: tr|Q338J6|Q338J6_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g26030 PE=4 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 97/161 (60.25%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 1    MTDCNATKYPMEPKAQLHKDREGAPIDATEYRSIVGCLRYLLNTRLDLSYA--------- 60
            M DCN+T  P+E ++QLHK  EG+ +D TEYR ++GCLRYLL+T+ DLSYA         
Sbjct: 936  MLDCNSTSIPIEHRSQLHKVAEGSTVDPTEYRRVIGCLRYLLHTQPDLSYAVGVVSKFME 995

Query: 61   --TTMHYKVVKQILRYLRGTIHFGLTYRKGPREFNIFGYSDGDLAIDLDGRKSTSGMTFY 120
              T MH+K VKQILRYL+GTI+ GL +  G     I G++D DLA D D R+STSGM FY
Sbjct: 996  QLTVMHFKAVKQILRYLKGTINCGLMFSGGNDAVEITGFTDSDLAGDSDDRRSTSGMAFY 1055

Query: 121  LNESLVSWNSQKQKTVALSSCDAKFIATTTAACQALWLRCL 151
             N SLVSW+SQKQKTVALSSC+A+F+A T AACQALWLR L
Sbjct: 1056 FNSSLVSWSSQKQKTVALSSCEAEFMAATAAACQALWLRGL 1096

The following BLAST results are available for this feature:

BLAST of CsaV3_3G024960 vs. NCBI nr


Match Name	E-value	Identity	Description
ABF94034.1	5.7e-48	60.87	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
BAF22809.1	2.8e-47	60.74	Os08g0125300 [Oryza sativa Japonica Group] >BAG92574.1 unnamed protein product [...	[more]
EEC84282.1	2.8e-47	60.74	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
ABB47537.2	1.6e-45	60.25	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
CAE04421.2	4.5e-45	59.63	OSJNBb0040D15.11 [Oryza sativa Japonica Group]	[more]

BLAST of CsaV3_3G024960 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-19	34.19	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	6.4e-17	31.90	DNA/RNA polymerases superfamily protein	[more]

BLAST of CsaV3_3G024960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT94\|POLR2_ARATH	1.4e-18	39.22	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
sp\|Q94HW2\|POLR1_ARATH	4.2e-18	38.26	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|P04146\|COPIA_DROME	1.4e-16	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
sp\|P92519\|M810_ARATH	1.1e-15	31.90	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|P10978\|POLX_TOBAC	1.3e-14	38.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CsaV3_3G024960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A9FJ50\|A0A0A9FJ50_ARUDO	3.8e-48	62.73	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|Q10RM4\|Q10RM4_ORYSJ	3.8e-48	60.87	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
tr\|Q0J8A6\|Q0J8A6_ORYSJ	1.9e-47	60.74	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
tr\|B8BDZ6\|B8BDZ6_ORYSI	1.9e-47	60.74	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]
tr\|Q338J6\|Q338J6_ORYSJ	1.0e-45	60.25	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G024960.1	CsaV3_3G024960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..150
None	No IPR available	PANTHER	PTHR11439:SF204	SUBFAMILY NOT NAMED	coord: 1..150
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 87..162 e-value: 1.13731E-27 score: 101.391
None	No IPR available	SUPERFAMILY	SSF56672	DNA/RNA polymerases	coord: 16..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G024960	CSPI03G24290	Wild cucumber (PI 183967)	cpicucB154

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G024960	Cucumber (Chinese Long) v3	cuccucB162
CsaV3_3G024960	Silver-seed gourd	carcucB0135
CsaV3_3G024960	Silver-seed gourd	carcucB0227
CsaV3_3G024960	Silver-seed gourd	carcucB0780
CsaV3_3G024960	Silver-seed gourd	carcucB1072
CsaV3_3G024960	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G024960	Cucumber (Gy14) v2	cgybcucB334
CsaV3_3G024960	Cucumber (Gy14) v1	cgycucB050
CsaV3_3G024960	Cucumber (Gy14) v1	cgycucB548
CsaV3_3G024960	Cucurbita maxima (Rimu)	cmacucB0284
CsaV3_3G024960	Cucurbita maxima (Rimu)	cmacucB0427
CsaV3_3G024960	Cucurbita maxima (Rimu)	cmacucB0540
CsaV3_3G024960	Cucurbita maxima (Rimu)	cmacucB1059
CsaV3_3G024960	Cucurbita moschata (Rifu)	cmocucB0275
CsaV3_3G024960	Cucurbita moschata (Rifu)	cmocucB0422
CsaV3_3G024960	Cucurbita moschata (Rifu)	cmocucB0524
CsaV3_3G024960	Cucurbita moschata (Rifu)	cmocucB1042
CsaV3_3G024960	Cucurbita pepo (Zucchini)	cpecucB0156
CsaV3_3G024960	Cucurbita pepo (Zucchini)	cpecucB0382
CsaV3_3G024960	Cucurbita pepo (Zucchini)	cpecucB0696
CsaV3_3G024960	Cucurbita pepo (Zucchini)	cpecucB0752
CsaV3_3G024960	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G024960	Wild cucumber (PI 183967)	cpicucB399
CsaV3_3G024960	Bottle gourd (USVL1VR-Ls)	cuclsiB179
CsaV3_3G024960	Bottle gourd (USVL1VR-Ls)	cuclsiB198
CsaV3_3G024960	Bottle gourd (USVL1VR-Ls)	cuclsiB255
CsaV3_3G024960	Melon (DHL92) v3.5.1	cucmeB191
CsaV3_3G024960	Melon (DHL92) v3.5.1	cucmeB220
CsaV3_3G024960	Melon (DHL92) v3.6.1	cucmedB182
CsaV3_3G024960	Melon (DHL92) v3.6.1	cucmedB213
CsaV3_3G024960	Melon (DHL92) v3.6.1	cucmedB228
CsaV3_3G024960	Watermelon (Charleston Gray)	cucwcgB186
CsaV3_3G024960	Watermelon (Charleston Gray)	cucwcgB263
CsaV3_3G024960	Watermelon (97103) v1	cucwmB198
CsaV3_3G024960	Watermelon (97103) v1	cucwmB226
CsaV3_3G024960	Watermelon (97103) v2	cucwmbB243
CsaV3_3G024960	Watermelon (97103) v2	cucwmbB258
CsaV3_3G024960	Wax gourd	cucwgoB275