CsaV3_3G023770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G023770
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 21619345 .. 21619542 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGGGAGAATACCAATACCAGAAAAGAAAAGAAAAATCAGTCCACACCTGCTAGGAGAGAAGTTGCGGCGGAAAAATGAATACAAACGACGACCCAATGGTGGCGTCATTGAGATGCTGAAACGGAGGAGAAATCGTGGAGAAGAAGAAGAAACAGTGAAGGACCGAGCACTTACGTCAGAAGAAGAGTAA

mRNA sequence

ATGGAGATTGGGAGAATACCAATACCAGAAAAGAAAAGAAAAATCAGTCCACACCTGCTAGGAGAGAAGTTGCGGCGGAAAAATGAATACAAACGACGACCCAATGGTGGCGTCATTGAGATGCTGAAACGGAGGAGAAATCGTGGAGAAGAAGAAGAAACAGTGAAGGACCGAGCACTTACGTCAGAAGAAGAGTAA

Coding sequence (CDS)

ATGGAGATTGGGAGAATACCAATACCAGAAAAGAAAAGAAAAATCAGTCCACACCTGCTAGGAGAGAAGTTGCGGCGGAAAAATGAATACAAACGACGACCCAATGGTGGCGTCATTGAGATGCTGAAACGGAGGAGAAATCGTGGAGAAGAAGAAGAAACAGTGAAGGACCGAGCACTTACGTCAGAAGAAGAGTAA

Protein sequence

MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLKRRRNRGEEEETVKDRALTSEEE
Homology
[Close]
BLAST of CsaV3_3G023770 vs. NCBI nr
Match: KGN58051.1 (hypothetical protein Csa_3G464695 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-21
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLKXXXXXXXXXETVKDRAL 60
          MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLK XXXXXXX ETVKDRAL
Sbjct: 1  MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLKRXXXXXXXEETVKDRAL 60

Query: 61 TSEEE 66
          TSEEE
Sbjct: 61 TSEEE 65

[Close]
BLAST of CsaV3_3G023770 vs. TrEMBL
Match: tr|A0A0A0LDC3|A0A0A0LDC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G464695 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.1e-21
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 1  MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLKXXXXXXXXXETVKDRAL 60
          MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLK XXXXXXX ETVKDRAL
Sbjct: 1  MEIGRIPIPEKKRKISPHLLGEKLRRKNEYKRRPNGGVIEMLKRXXXXXXXEETVKDRAL 60

Query: 61 TSEEE 66
          TSEEE
Sbjct: 61 TSEEE 65

The following BLAST results are available for this feature:
BLAST of CsaV3_3G023770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58051.16.2e-2196.92hypothetical protein Csa_3G464695 [Cucumis sativus][more]
BLAST of CsaV3_3G023770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023770 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDC3|A0A0A0LDC3_CUCSA4.1e-2196.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G464695 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G023770.1CsaV3_3G023770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G023770CSPI03G24050Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G023770Watermelon (97103) v2cucwmbB243
CsaV3_3G023770Watermelon (97103) v2cucwmbB258
CsaV3_3G023770Wax gourdcucwgoB275
CsaV3_3G023770Cucumber (Chinese Long) v3cuccucB162
CsaV3_3G023770Silver-seed gourdcarcucB0135
CsaV3_3G023770Silver-seed gourdcarcucB0227
CsaV3_3G023770Silver-seed gourdcarcucB0780
CsaV3_3G023770Silver-seed gourdcarcucB1072
CsaV3_3G023770Cucumber (Gy14) v1cgycucB015
CsaV3_3G023770Cucumber (Gy14) v2cgybcucB117
CsaV3_3G023770Cucumber (Gy14) v2cgybcucB334
CsaV3_3G023770Cucumber (Gy14) v1cgycucB548
CsaV3_3G023770Cucurbita maxima (Rimu)cmacucB0150
CsaV3_3G023770Cucurbita maxima (Rimu)cmacucB0284
CsaV3_3G023770Cucurbita maxima (Rimu)cmacucB0427
CsaV3_3G023770Cucurbita maxima (Rimu)cmacucB0540
CsaV3_3G023770Cucurbita maxima (Rimu)cmacucB1059
CsaV3_3G023770Cucurbita moschata (Rifu)cmocucB0135
CsaV3_3G023770Cucurbita moschata (Rifu)cmocucB0275
CsaV3_3G023770Cucurbita moschata (Rifu)cmocucB0422
CsaV3_3G023770Cucurbita moschata (Rifu)cmocucB0524
CsaV3_3G023770Cucurbita moschata (Rifu)cmocucB1042
CsaV3_3G023770Cucurbita pepo (Zucchini)cpecucB0156
CsaV3_3G023770Cucurbita pepo (Zucchini)cpecucB0382
CsaV3_3G023770Cucurbita pepo (Zucchini)cpecucB0696
CsaV3_3G023770Cucurbita pepo (Zucchini)cpecucB0752
CsaV3_3G023770Cucurbita pepo (Zucchini)cpecucB0839
CsaV3_3G023770Wild cucumber (PI 183967)cpicucB399
CsaV3_3G023770Bottle gourd (USVL1VR-Ls)cuclsiB179
CsaV3_3G023770Bottle gourd (USVL1VR-Ls)cuclsiB198
CsaV3_3G023770Bottle gourd (USVL1VR-Ls)cuclsiB255
CsaV3_3G023770Melon (DHL92) v3.5.1cucmeB191
CsaV3_3G023770Melon (DHL92) v3.5.1cucmeB220
CsaV3_3G023770Melon (DHL92) v3.6.1cucmedB182
CsaV3_3G023770Melon (DHL92) v3.6.1cucmedB213
CsaV3_3G023770Melon (DHL92) v3.6.1cucmedB228
CsaV3_3G023770Watermelon (Charleston Gray)cucwcgB186
CsaV3_3G023770Watermelon (Charleston Gray)cucwcgB263
CsaV3_3G023770Watermelon (97103) v1cucwmB198
CsaV3_3G023770Watermelon (97103) v1cucwmB226