CsaV3_3G023570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G023570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 21317216 .. 21317515 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCATCCCACCTTAACCCCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTGTTTCCTACAAATCTTCACTTTTTTCATTCATTCATCTTCTGGGTCTTTCCCTTTTTTCATATACTTCTTCCCCATCTCTCTACTTTTTAGTCTTTTTGTATACAGATTATGA

mRNA sequence

ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCATCCCACCTTAACCCCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTGTTTCCTACAAATCTTCACTTTTTTCATTCATTCATCTTCTGGGTCTTTCCCTTTTTTCATATACTTCTTCCCCATCTCTCTACTTTTTAGTCTTTTTGTATACAGATTATGA

Coding sequence (CDS)

ATGATCACTCATCACTTTTACCCAAAAACAGATGCCTCTGTTTACACTTTTTTCACTTCTCTCCTTCATCCCACCTTAACCCCTTCTCTGTTTCCAGCTCATTTTCTTCTTCTTCCTTCCCCCATTATTCTTTTCCCAATTTTAGCATACTCTTCATTTTCCTTCGTTTTCTGCTCTAAATCTTCCTGTTTCCTACAAATCTTCACTTTTTTCATTCATTCATCTTCTGGGTCTTTCCCTTTTTTCATATACTTCTTCCCCATCTCTCTACTTTTTAGTCTTTTTGTATACAGATTATGA

Protein sequence

MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSKSSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL
Homology
[Close]
BLAST of CsaV3_3G023570 vs. NCBI nr
Match: KGN58030.1 (hypothetical protein Csa_3G444580 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
           MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1   MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60

Query: 61  SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 100
           SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL
Sbjct: 61  SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99

[Close]
BLAST of CsaV3_3G023570 vs. TrEMBL
Match: tr|A0A0A0L7Z1|A0A0A0L7Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 8.1e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60
           MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK
Sbjct: 1   MITHHFYPKTDASVYTFFTSLLHPTLTPSLFPAHFLLLPSPIILFPILAYSSFSFVFCSK 60

Query: 61  SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 100
           SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL
Sbjct: 61  SSCFLQIFTFFIHSSSGSFPFFIYFFPISLLFSLFVYRL 99

The following BLAST results are available for this feature:
BLAST of CsaV3_3G023570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58030.11.2e-44100.00hypothetical protein Csa_3G444580 [Cucumis sativus][more]
BLAST of CsaV3_3G023570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7Z1|A0A0A0L7Z1_CUCSA8.1e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444580 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G023570.1CsaV3_3G023570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G023570Silver-seed gourdcarcucB0135
CsaV3_3G023570Silver-seed gourdcarcucB0227
CsaV3_3G023570Silver-seed gourdcarcucB0780
CsaV3_3G023570Silver-seed gourdcarcucB1072
CsaV3_3G023570Cucumber (Gy14) v2cgybcucB029
CsaV3_3G023570Cucumber (Gy14) v2cgybcucB117
CsaV3_3G023570Cucumber (Gy14) v1cgycucB427
CsaV3_3G023570Cucumber (Gy14) v1cgycucB448
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB0086
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB0150
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB0284
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB0427
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB0540
CsaV3_3G023570Cucurbita maxima (Rimu)cmacucB1059
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB0075
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB0135
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB0275
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB0422
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB0524
CsaV3_3G023570Cucurbita moschata (Rifu)cmocucB1042
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0156
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0382
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0456
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0696
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0752
CsaV3_3G023570Cucurbita pepo (Zucchini)cpecucB0839
CsaV3_3G023570Wild cucumber (PI 183967)cpicucB035
CsaV3_3G023570Wild cucumber (PI 183967)cpicucB144
CsaV3_3G023570Bottle gourd (USVL1VR-Ls)cuclsiB179
CsaV3_3G023570Bottle gourd (USVL1VR-Ls)cuclsiB195
CsaV3_3G023570Bottle gourd (USVL1VR-Ls)cuclsiB249
CsaV3_3G023570Bottle gourd (USVL1VR-Ls)cuclsiB255
CsaV3_3G023570Melon (DHL92) v3.5.1cucmeB197
CsaV3_3G023570Melon (DHL92) v3.5.1cucmeB220
CsaV3_3G023570Melon (DHL92) v3.6.1cucmedB188
CsaV3_3G023570Melon (DHL92) v3.6.1cucmedB213
CsaV3_3G023570Melon (DHL92) v3.6.1cucmedB228
CsaV3_3G023570Watermelon (Charleston Gray)cucwcgB192
CsaV3_3G023570Watermelon (Charleston Gray)cucwcgB223
CsaV3_3G023570Watermelon (Charleston Gray)cucwcgB263
CsaV3_3G023570Watermelon (97103) v1cucwmB191
CsaV3_3G023570Watermelon (97103) v1cucwmB223
CsaV3_3G023570Watermelon (97103) v1cucwmB226
CsaV3_3G023570Watermelon (97103) v2cucwmbB204
CsaV3_3G023570Watermelon (97103) v2cucwmbB243
CsaV3_3G023570Watermelon (97103) v2cucwmbB263
CsaV3_3G023570Wax gourdcucwgoB275
CsaV3_3G023570Wax gourdcucwgoB358