CsaV3_3G023330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G023330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPol polyprotein
Locationchr3 : 20899213 .. 20899424 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

mRNA sequence

TATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

Coding sequence (CDS)

TATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

Protein sequence

YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNITHKITTIYDP
Homology
[Close]
BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_023520803.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784278 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1    YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
            YVSKW EAI    ND  TV+KFLKRNIFT+FG PRALISNEG  F+N +M +LL +YN+ 
Sbjct: 956  YVSKWVEAIACPSNDGKTVLKFLKRNIFTRFGVPRALISNEGTHFVNRLMNSLLERYNVK 1015

Query: 61   HKITTIYDP 70
            H++ T Y P
Sbjct: 1016 HRVATPYHP 1024

[Close]
BLAST of CsaV3_3G023330 vs. NCBI nr
Match: PNY02207.1 (hypothetical protein L195_g025512 [Trifolium pratense])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YV+KW EA+    NDA TV+KFLK+N+FT+FG PR LIS+ G  FINH +ANLL KYN+ 
Sbjct: 212 YVTKWVEAMACQANDAATVVKFLKKNVFTRFGVPRVLISDGGKHFINHHLANLLKKYNVK 271

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 272 HKVATPYHP 280

[Close]
BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_022156052.1 (uncharacterized protein LOC111023021 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
          YVSKW EA+  A +DA  V KFL ++IFT+FGTPRALIS+EG  FIN ++A+LL KYNI 
Sbjct: 22 YVSKWVEAVACASSDAKVVAKFLHKHIFTRFGTPRALISDEGSHFINKVVASLLAKYNIK 81

Query: 61 HKITTIYDP 70
          HK++T Y P
Sbjct: 82 HKVSTTYHP 90

[Close]
BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_023521407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EAI    ND  TV+KFLKRNIFT+FG PRALIS+EG  F+N +M +LL +YN+ 
Sbjct: 267 YVSKWVEAIACPSNDGKTVLKFLKRNIFTRFGVPRALISDEGTHFVNRLMNSLLERYNVK 326

Query: 61  HKITTIYDP 70
           H++ T Y P
Sbjct: 327 HRVATPYHP 335

[Close]
BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_017221472.1 (PREDICTED: uncharacterized protein LOC108198219 [Daucus carota subsp. sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.4e-16
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EA  Y  NDA  V+KFL ++IFT+FGTPRA+IS+EG  F+N ++ N L KYN+ 
Sbjct: 332 YVSKWVEAAVYPTNDAKVVVKFLDKHIFTRFGTPRAIISDEGTHFVNKLLFNTLAKYNVR 391

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 392 HKVATAYHP 400

[Close]
BLAST of CsaV3_3G023330 vs. TrEMBL
Match: tr|A0A2K3NGQ1|A0A2K3NGQ1_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g025512 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YV+KW EA+    NDA TV+KFLK+N+FT+FG PR LIS+ G  FINH +ANLL KYN+ 
Sbjct: 212 YVTKWVEAMACQANDAATVVKFLKKNVFTRFGVPRVLISDGGKHFINHHLANLLKKYNVK 271

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 272 HKVATPYHP 280

[Close]
BLAST of CsaV3_3G023330 vs. TrEMBL
Match: tr|A0A1S4AST8|A0A1S4AST8_TOBAC (uncharacterized protein K02A2.6-like OS=Nicotiana tabacum OX=4097 GN=LOC107800999 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EAI    NDA+ V  F+K+NIF++FGTPRALIS+EG  F N ++ NLL KY + 
Sbjct: 332 YVSKWVEAIALPTNDAMVVAAFVKKNIFSRFGTPRALISDEGTHFCNRLLNNLLAKYGVR 391

Query: 61  HKITTIYDP 70
           HKITT Y P
Sbjct: 392 HKITTTYHP 400

[Close]
BLAST of CsaV3_3G023330 vs. TrEMBL
Match: tr|A0A1U7YCC2|A0A1U7YCC2_NICSY (uncharacterized protein LOC104243016 OS=Nicotiana sylvestris OX=4096 GN=LOC104243016 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EAI    NDA+ V  F+K+NIF++FGTPRALIS+EG  F N +++NLL KY + 
Sbjct: 758 YVSKWVEAIALPTNDAIVVAAFVKKNIFSRFGTPRALISDEGTHFCNRLLSNLLAKYGVC 817

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 818 HKVATTYHP 826

[Close]
BLAST of CsaV3_3G023330 vs. TrEMBL
Match: tr|A0A2K3JM00|A0A2K3JM00_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g048696 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-15
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
          YV+KW EAI    NDA TV+KFLK NIFT+FG PRALIS+ G  F N  + NLL KYN+ 
Sbjct: 9  YVTKWVEAIACQANDAHTVVKFLKNNIFTRFGVPRALISDGGKHFCNKYLENLLAKYNVK 68

Query: 61 HKITTIYDP 70
          HK+ T Y P
Sbjct: 69 HKVATPYHP 77

[Close]
BLAST of CsaV3_3G023330 vs. TrEMBL
Match: tr|A0A2K3NQ71|A0A2K3NQ71_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g001632 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-15
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YV+KW EA+    NDA TV+KFLK+NIFT+FG PR LIS+ G  FIN  + NLL+KYN+ 
Sbjct: 808 YVTKWVEAMACQANDASTVVKFLKKNIFTRFGVPRVLISDGGKHFINKHLENLLLKYNVK 867

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 868 HKVATPYHP 876

The following BLAST results are available for this feature:
BLAST of CsaV3_3G023330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520803.11.7e-1662.32LOW QUALITY PROTEIN: uncharacterized protein LOC111784278 [Cucurbita pepo subsp.... [more]
PNY02207.13.8e-1660.87hypothetical protein L195_g025512 [Trifolium pratense][more]
XP_022156052.14.9e-1662.32uncharacterized protein LOC111023021 [Momordica charantia][more]
XP_023521407.16.4e-1660.87LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp.... [more]
XP_017221472.18.4e-1657.97PREDICTED: uncharacterized protein LOC108198219 [Daucus carota subsp. sativus][more]
BLAST of CsaV3_3G023330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G023330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K3NGQ1|A0A2K3NGQ1_TRIPR2.5e-1660.87Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g025512 PE=4 SV=1[more]
tr|A0A1S4AST8|A0A1S4AST8_TOBAC1.2e-1560.87uncharacterized protein K02A2.6-like OS=Nicotiana tabacum OX=4097 GN=LOC10780099... [more]
tr|A0A1U7YCC2|A0A1U7YCC2_NICSY1.6e-1557.97uncharacterized protein LOC104243016 OS=Nicotiana sylvestris OX=4096 GN=LOC10424... [more]
tr|A0A2K3JM00|A0A2K3JM00_TRIPR6.1e-1560.87Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04869... [more]
tr|A0A2K3NQ71|A0A2K3NQ71_TRIPR6.1e-1559.42Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g001632 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G023330.1CsaV3_3G023330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3DG3DSA:3.30.420.10coord: 1..69
e-value: 3.3E-15
score: 57.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..69
score: 8.89
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 2..69

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G023330Cucumber (Gy14) v2cgybcucB117
CsaV3_3G023330Cucumber (Gy14) v1cgycucB375
CsaV3_3G023330Wild cucumber (PI 183967)cpicucB144
CsaV3_3G023330Melon (DHL92) v3.5.1cucmeB207
CsaV3_3G023330Melon (DHL92) v3.6.1cucmedB200
CsaV3_3G023330Watermelon (97103) v1cucwmB191