CsaV3_3G023020 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G023020
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 20557749 .. 20558075 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTACAGAAAGTGTGGGCTATGGTCAGTATGGACCATTCTCATGAAGCAGCGATGAGGTGGAGGAAATCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCACTCAAAAACTGGTTGGTGAAGGAGGACGTAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCGTAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

mRNA sequence

ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTACAGAAAGTGTGGGCTATGGTCAGTATGGACCATTCTCATGAAGCAGCGATGAGGTGGAGGAAATCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCACTCAAAAACTGGTTGGTGAAGGAGGACGTAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCGTAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

Coding sequence (CDS)

ATGAGTGAATTCTTCTCCAAATGTGGTTTCATTTCTTTGGTACAGAAAGTGTGGGCTATGGTCAGTATGGACCATTCTCATGAAGCAGCGATGAGGTGGAGGAAATCAGCCAAAAGACCTAAACCCGGTGGGGGCCCAAACCAAATCACTCAAAAACTGGTTGGTGAAGGAGGACGTAATGCTAGGTCTATTATTGAGCCTCAAATGGGAAATGGTGGATTTGATCAGAAGGGGAACACCGTAGTGGGCCCTTTTCTAGAAACTTGGTTGATGGGCCAGCTACTAAACATCGATCAAATGGGGATAGTGGAATCAACTTGCATATAG

Protein sequence

MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRNARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI

Homology

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BLAST of CsaV3_3G023020 vs. NCBI nr
Match: KGN57978.1 (hypothetical protein Csa_3G417700 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 5.8e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60
           MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN
Sbjct: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60

Query: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 109
           ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI
Sbjct: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 108

[Close]

BLAST of CsaV3_3G023020 vs. TrEMBL
Match: tr|A0A0A0L872|A0A0A0L872_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417700 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60
           MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN
Sbjct: 1   MSEFFSKCGFISLVQKVWAMVSMDHSHEAAMRWRKSAKRPKPGGGPNQITQKLVGEGGRN 60

Query: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 109
           ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI
Sbjct: 61  ARSIIEPQMGNGGFDQKGNTVVGPFLETWLMGQLLNIDQMGIVESTCI 108

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57978.1	5.8e-56	100.00	hypothetical protein Csa_3G417700 [Cucumis sativus]	[more]

BLAST of CsaV3_3G023020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L872\|A0A0A0L872_CUCSA	3.8e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417700 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023020.1	CsaV3_3G023020.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G023020	CSPI03G23280	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G023020	CsGy3G022290	Cucumber (Gy14) v2	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G023020	Cucumber (Gy14) v1	cgycucB410
CsaV3_3G023020	Cucurbita maxima (Rimu)	cmacucB0022
CsaV3_3G023020	Cucurbita maxima (Rimu)	cmacucB0549
CsaV3_3G023020	Cucurbita moschata (Rifu)	cmocucB0010
CsaV3_3G023020	Cucurbita moschata (Rifu)	cmocucB0534
CsaV3_3G023020	Cucurbita pepo (Zucchini)	cpecucB0688
CsaV3_3G023020	Cucurbita pepo (Zucchini)	cpecucB0965
CsaV3_3G023020	Bottle gourd (USVL1VR-Ls)	cuclsiB211
CsaV3_3G023020	Bottle gourd (USVL1VR-Ls)	cuclsiB213
CsaV3_3G023020	Melon (DHL92) v3.5.1	cucmeB207
CsaV3_3G023020	Melon (DHL92) v3.6.1	cucmedB200
CsaV3_3G023020	Watermelon (Charleston Gray)	cucwcgB231
CsaV3_3G023020	Watermelon (Charleston Gray)	cucwcgB242
CsaV3_3G023020	Watermelon (97103) v1	cucwmB257
CsaV3_3G023020	Watermelon (97103) v2	cucwmbB213
CsaV3_3G023020	Watermelon (97103) v2	cucwmbB221
CsaV3_3G023020	Wax gourd	cucwgoB350
CsaV3_3G023020	Wax gourd	cucwgoB353
CsaV3_3G023020	Silver-seed gourd	carcucB0941
CsaV3_3G023020	Silver-seed gourd	carcucB1059