CsaV3_3G022990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022990
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 20536099 .. 20536647 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGTCGATGAAGAAAGTATGGGAATAAAAGATTATGTAAAGCAAGAGGCAAAAGAAAGTGAAAAGATATACAAGAATAAAAGACTATGTAACAAGAAGAAGAAGATAGGAATAAGGAAGAGATGAAACAGCCAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

mRNA sequence

ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

Coding sequence (CDS)

ATGAGTAACAAACACTCCTTATTTTCGACGCCTATAGCGATAAGGTTCCAAAAGCATAAAAAAGGCGAAAGGATGGAGAAGGCGAGGAAGGAGGATCTTGAGCTTCCAATCAAAAGCACCTCCTCGCCTGATGCTGATTTTACAAGGTTAGCGACAAGGACCCCCGTAAGATCTGCAAAAGGAATTCAGGTCCTTGGAAAAAGAAGCAAGGGAAAAGAGTGGGGGACAAAGGTGGTGGAGGGCGTGGCCGAGGAGTCTGAGAAAGAAGAAAAGGAAATCACCATGTCGGAGGAGAAATTGTCCATCCACAAGAAAGAAGAGATCCTAGCGTGTGCGAGGATGCTCTTGTGGACACAATTAGATAAGGGGAGAAATGGAAAGTTGGGACCTCATCACCATCCATTTGGCGATAAATAA

Protein sequence

MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHPFGDK
Homology
[Close]
BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_3G417670 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.5e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60
           MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK
Sbjct: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60

Query: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120
           GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL
Sbjct: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120

Query: 121 DKGRNGKLGPHHHPFGDK 139
           DKGRNGKLGPHHHPFGDK
Sbjct: 121 DKGRNGKLGPHHHPFGDK 138

[Close]
BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_3G399460 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 1.8e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0 

Query: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89

Query: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149

Query: 135 PHHHPFGDK 139
           P HHP+G+K
Sbjct: 150 PQHHPYGNK 154

[Close]
BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_1G173720 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 135
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]
BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_3G265260 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60

Query: 97  EEKLSIHKKEEILACARMLLWTQLDK 123
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]
BLAST of CsaV3_3G022990 vs. NCBI nr
Match: KGN44040.1 (hypothetical protein Csa_7G129390 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 73  EWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLGPHH 132
           E  TKV E   +E EKE  + TM EEK+   KKE     A+MLL  Q++K R GKLG  H
Sbjct: 2   ECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRH 61

Query: 133 HPFGDK 139
           HP+G++
Sbjct: 62  HPYGEE 67

[Close]
BLAST of CsaV3_3G022990 vs. TrEMBL
Match: tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60
           MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK
Sbjct: 1   MSNKHSLFSTPIAIRFQKHKKGERMEKARKEDLELPIKSTSSPDADFTRLATRTPVRSAK 60

Query: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120
           GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL
Sbjct: 61  GIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQL 120

Query: 121 DKGRNGKLGPHHHPFGDK 139
           DKGRNGKLGPHHHPFGDK
Sbjct: 121 DKGRNGKLGPHHHPFGDK 138

[Close]
BLAST of CsaV3_3G022990 vs. TrEMBL
Match: tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0 

Query: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89

Query: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149

Query: 135 PHHHPFGDK 139
           P HHP+G+K
Sbjct: 150 PQHHPYGNK 154

[Close]
BLAST of CsaV3_3G022990 vs. TrEMBL
Match: tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 40  TSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMSEEK 99
           TSSPDADF+ LATRT +RS K I V  +R K  +  TKV + VAEE EKE+   T+SEEK
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 100 LSIHKKEEILACARMLLWTQLDKGRNGKLGPHHHP 135
           +   KKEE    +R LL  Q+++G+  ++GPHHHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]
BLAST of CsaV3_3G022990 vs. TrEMBL
Match: tr|A0A0A0L6W8|A0A0A0L6W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 46/86 (53.49%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 37  IKSTSSPDADFTRLATRTPVRSAKGIQVLGKRSKGKEWGTKVVEGVAEESEKEEKEITMS 96
           ++STSSPDADF  LATRTP RS  GIQ                E VAEE EK+E   T+ 
Sbjct: 1   MESTSSPDADFIGLATRTPTRSTLGIQ--------------AGEDVAEEFEKQEIINTLL 60

Query: 97  EEKLSIHKKEEILACARMLLWTQLDK 123
           EEK+S HKKEEILA +RMLL  Q ++
Sbjct: 61  EEKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]
BLAST of CsaV3_3G022990 vs. TrEMBL
Match: tr|A0A0A0K323|A0A0A0K323_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 73  EWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLGPHH 132
           E  TKV E   +E EKE  + TM EEK+   KKE     A+MLL  Q++K R GKLG  H
Sbjct: 2   ECETKVEEEATKEFEKESNKNTMLEEKMPNGKKEGGQVYAKMLLRAQVEKRRKGKLGSRH 61

Query: 133 HPFGDK 139
           HP+G++
Sbjct: 62  HPYGEE 67

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57975.11.5e-69100.00hypothetical protein Csa_3G417670 [Cucumis sativus][more]
KGN57939.11.8e-2557.36hypothetical protein Csa_3G399460 [Cucumis sativus][more]
KGN65003.12.7e-1352.63hypothetical protein Csa_1G173720 [Cucumis sativus][more]
KGN57730.11.5e-0853.49hypothetical protein Csa_3G265260 [Cucumis sativus][more]
KGN44040.11.7e-0448.48hypothetical protein Csa_7G129390 [Cucumis sativus][more]
BLAST of CsaV3_3G022990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022990 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7Q4|A0A0A0L7Q4_CUCSA1.0e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1[more]
tr|A0A0A0LAF6|A0A0A0LAF6_CUCSA1.2e-2557.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1[more]
tr|A0A0A0LTC4|A0A0A0LTC4_CUCSA1.8e-1352.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1[more]
tr|A0A0A0L6W8|A0A0A0L6W8_CUCSA1.0e-0853.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1[more]
tr|A0A0A0K323|A0A0A0K323_CUCSA1.1e-0448.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G129390 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022990.1CsaV3_3G022990.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..106

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022990Silver-seed gourdcarcucB0941
CsaV3_3G022990Silver-seed gourdcarcucB1059
CsaV3_3G022990Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022990Cucumber (Gy14) v1cgycucB410
CsaV3_3G022990Cucurbita maxima (Rimu)cmacucB0022
CsaV3_3G022990Cucurbita maxima (Rimu)cmacucB0549
CsaV3_3G022990Cucurbita moschata (Rifu)cmocucB0010
CsaV3_3G022990Cucurbita moschata (Rifu)cmocucB0534
CsaV3_3G022990Cucurbita pepo (Zucchini)cpecucB0688
CsaV3_3G022990Cucurbita pepo (Zucchini)cpecucB0965
CsaV3_3G022990Wild cucumber (PI 183967)cpicucB144
CsaV3_3G022990Bottle gourd (USVL1VR-Ls)cuclsiB213
CsaV3_3G022990Melon (DHL92) v3.5.1cucmeB207
CsaV3_3G022990Melon (DHL92) v3.6.1cucmedB200
CsaV3_3G022990Watermelon (Charleston Gray)cucwcgB242
CsaV3_3G022990Watermelon (97103) v1cucwmB257
CsaV3_3G022990Watermelon (97103) v2cucwmbB221
CsaV3_3G022990Wax gourdcucwgoB350
CsaV3_3G022990Wax gourdcucwgoB353