CsaV3_3G022970 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G022970
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 20505281 .. 20505562 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATGTTGTCGCAAGGTTCCACAAAGAAGAAGTAGAAAGTCCACTCACCTAACCTCTACTCTCCAGTTCAACTCCTCTGAAGGAAACTACTCTCAAACTCCCGAGGACGATAAGACAACAACCTTCTATTCTCTAATTCAAATCAACCAACCAACAAACTATAAAGAACCTACTTTCACCCAAACAATCCAAAAGCCTCAAGCATTGTTCAGCACTCCCGTGATGCACCCCGATTCAGCGGTACAAGTGAGGACACATCCACCAGAGCCATCTCCATAA

mRNA sequence

ATGACATGTTGTCGCAAGGTTCCACAAAGAAGAAGTAGAAAGTCCACTCACCTAACCTCTACTCTCCAGTTCAACTCCTCTGAAGGAAACTACTCTCAAACTCCCGAGGACGATAAGACAACAACCTTCTATTCTCTAATTCAAATCAACCAACCAACAAACTATAAAGAACCTACTTTCACCCAAACAATCCAAAAGCCTCAAGCATTGTTCAGCACTCCCGTGATGCACCCCGATTCAGCGGTACAAGTGAGGACACATCCACCAGAGCCATCTCCATAA

Coding sequence (CDS)

ATGACATGTTGTCGCAAGGTTCCACAAAGAAGAAGTAGAAAGTCCACTCACCTAACCTCTACTCTCCAGTTCAACTCCTCTGAAGGAAACTACTCTCAAACTCCCGAGGACGATAAGACAACAACCTTCTATTCTCTAATTCAAATCAACCAACCAACAAACTATAAAGAACCTACTTTCACCCAAACAATCCAAAAGCCTCAAGCATTGTTCAGCACTCCCGTGATGCACCCCGATTCAGCGGTACAAGTGAGGACACATCCACCAGAGCCATCTCCATAA

Protein sequence

MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTFTQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP

Homology

[Close]

BLAST of CsaV3_3G022970 vs. NCBI nr
Match: KGN57974.1 (hypothetical protein Csa_3G416670 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF 60
          MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF
Sbjct: 1  MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF 60

Query: 61 TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP 94
          TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP
Sbjct: 61 TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP 93

[Close]

BLAST of CsaV3_3G022970 vs. TrEMBL
Match: tr|A0A0A0LAK3|A0A0A0LAK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G416670 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF 60
          MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF
Sbjct: 1  MTCCRKVPQRRSRKSTHLTSTLQFNSSEGNYSQTPEDDKTTTFYSLIQINQPTNYKEPTF 60

Query: 61 TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP 94
          TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP
Sbjct: 61 TQTIQKPQALFSTPVMHPDSAVQVRTHPPEPSP 93

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57974.1	1.2e-44	100.00	hypothetical protein Csa_3G416670 [Cucumis sativus]	[more]

BLAST of CsaV3_3G022970 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAK3\|A0A0A0LAK3_CUCSA	7.6e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G416670 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022970.1	CsaV3_3G022970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..37

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G022970	Watermelon (97103) v2	cucwmbB221
CsaV3_3G022970	Wax gourd	cucwgoB350
CsaV3_3G022970	Wax gourd	cucwgoB353
CsaV3_3G022970	Silver-seed gourd	carcucB0941
CsaV3_3G022970	Silver-seed gourd	carcucB1059
CsaV3_3G022970	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G022970	Cucumber (Gy14) v1	cgycucB410
CsaV3_3G022970	Cucurbita maxima (Rimu)	cmacucB0022
CsaV3_3G022970	Cucurbita maxima (Rimu)	cmacucB0549
CsaV3_3G022970	Cucurbita moschata (Rifu)	cmocucB0010
CsaV3_3G022970	Cucurbita moschata (Rifu)	cmocucB0534
CsaV3_3G022970	Cucurbita pepo (Zucchini)	cpecucB0688
CsaV3_3G022970	Cucurbita pepo (Zucchini)	cpecucB0965
CsaV3_3G022970	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G022970	Bottle gourd (USVL1VR-Ls)	cuclsiB213
CsaV3_3G022970	Melon (DHL92) v3.5.1	cucmeB207
CsaV3_3G022970	Melon (DHL92) v3.6.1	cucmedB200
CsaV3_3G022970	Watermelon (Charleston Gray)	cucwcgB242
CsaV3_3G022970	Watermelon (97103) v1	cucwmB257