CsaV3_3G022930 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G022930
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	transcription factor ILR3-like
Location	chr3 : 20456474 .. 20458269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTACCCGATGGGAATTTCCCGGTCGCGAGCTCAAGCTTCTCTTGGCCTATTCAGCCCTTTAACGGCGCCCATGATTCCGGGTAATCTCAGATTTCTCTCAATTATTCTTTTAAGCTTTTTTCCCCTTCTTCTTATCGAATCTATTGGGGAAGACATAATACTTCCCGGATTTTCTTGTTCATACCGAATTGTTGGAGGTGGGTGACCCCTTTCTCTCATTGCTCAGATTAATTTTCGAGAGGATTTCTTTTAAGCAAGATCTCAACCTGGTTTTGAACATTTTTGGATTGAGTTAGTTATTGGTTCAGACGTCCGACTTATGAATGGAAGTTTAGGAGATTTTGGGTGGGAAATGTTTTGTACAGATGCTATACTTCTGATTGTGTTTGGTGAACTATCATGTCGTTGACCTAATTAATTTAGTATCCACGGGGATGATGGGTGTAGTTAACCAGAGTTTTGTTTTTTGGGCTAAAACTATTTGTTATTGTATTTTAGAAACTTTAAGATTGTGAGGATGATGAACAAAGAACGTCATACCATTGTGCATCTTGGTTTCGATGTTTATGTGTATTTGTCAGTTGACCGTTTGGAAAGAACTCTGATGTTATTTTTAATCCTTTTAGTATGCGAAATAATATGTTTTCTAGTTTGCTTTCAATGGACATGTTGATATAAATTTTGTGTGTACTTATTTCTTTTTCCTTTGACATGTTATTGCAGTGTGGAAATTGATGGTTCGTTGGCAGATCTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGTACGAACCTTTATTGTTACCTTTTAATCTTTTTTGTTTGGACAAAATTATCCTCTTACTTCCTTCAACCCAACATGTTGAACTCAAAGAAAGATCAGCATTTTGCCTCTAAATAATATGCCAGATTTGAATGTCTTTCCGTATGAACAGCTAACCCATGGGGCTGTGTTATTATCACAAGTAGAGCAGCATGGTGTGAATAAATTACAAGACTTCAGAATTTCTTTATGGACTTTCAGGAAGCATTTAATTAGCCATCACTTGTAATTTTGAGTTCCTTTAATTTAAAATTGCCTGAAATTTTCATTAGTATTATGTTTTGATGGGCTCAAAATTACTTATAGGTCAGTTACTATGACAATAAGTGGTTGGGGGTAAGATAGGTAGATATTGCTTTGGTTTACGTGACTAACAGAATTTGAGTATCTTTTTGCTGAGATGCAAGGCATTTGCCCCGTGCACAGCACATGGTATAGATGTTTCCTTATTTGCTATGAGTTAACTGTAGAGTGGAGAGCACTTGGTTTTGTGGCTTAGATGGGGAGTTAGCGACAGCCACGATTCTTCATAGTTTGTCCAATTGAGCTTCAACCCATTTATTTTTATTTACATTTTATGAGAATTTTTATAATTATGCTGTGGATCCATTTGTGTTTGCTTTCATGTATGTTCTCTGTGTGAAATTTGGTTATACATGTTAAAGATATTGAGGTGGTTAAAGTAAACCTAGATAGAGAATAATAACAGATTAGAAATTAGAAAGGAAAATTTCATATGCCATTGAATTAAGTACCCTTGTTTTCTGTTACAGGGTTAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGATAGGCTCAATGACAAGTACTTCCTCTGACCCAAACCAATGTGCAACCAACACATTTTCCCTTCATTTATGTTCATAA

mRNA sequence

ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTACCCGATGGGAATTTCCCGGTCGCGAGCTCAAGCTTCTCTTGGCCTATTCAGCCCTTTAACGGCGCCCATGATTCCGGTGTGGAAATTGATGGTTCGTTGGCAGATCTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTTAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGATAGGCTCAATGACAAGTACTTCCTCTGACCCAAACCAATGTGCAACCAACACATTTTCCCTTCATTTATGTTCATAA

Coding sequence (CDS)

ATGGTATCCCCCGAAAATCCCAATTGGTTGTTCGATTATGGTTTGATCGAAGACATCCCTGTACCCGATGGGAATTTCCCGGTCGCGAGCTCAAGCTTCTCTTGGCCTATTCAGCCCTTTAACGGCGCCCATGATTCCGGTGTGGAAATTGATGGTTCGTTGGCAGATCTGGATGGCCGTCTAGAATCAGGCTCAAAGAAGCGGGTTAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGATAGGCTCAATGACAAGTACTTCCTCTGACCCAAACCAATGTGCAACCAACACATTTTCCCTTCATTTATGTTCATAA

Protein sequence

MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRIGSMTSTSSDPNQCATNTFSLHLCS

Homology

[Close]

BLAST of CsaV3_3G022930 vs. NCBI nr
Match: XP_004151959.2 (PREDICTED: transcription factor ILR3 [Cucumis sativus] >KGN57970.1 hypothetical protein Csa_3G416140 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSWPIQPFNG+HDSGVEIDGSLADLDGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. NCBI nr
Match: XP_004151962.2 (PREDICTED: transcription factor ILR3-like [Cucumis sativus] >KGN57965.1 hypothetical protein Csa_3G415100 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 7.2e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSWPIQPFNG+HDSGVEIDGSLADLDG 
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGH 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. NCBI nr
Match: XP_008454558.1 (PREDICTED: transcription factor ILR3 isoform X1 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 7.9e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSF+W IQPFNGAHD+GVEIDGSLAD+DGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTGVEIDGSLADVDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. NCBI nr
Match: XP_008454561.1 (PREDICTED: transcription factor ILR3-like [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.4e-39
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSW IQ FNGAHD+GVEIDGSLADLDGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWAIQTFNGAHDTGVEIDGSLADLDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. NCBI nr
Match: XP_023535130.1 (transcription factor ILR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDY LI+DIPVPD NFPV SSSFSW +QPFNG+ D+GVEIDGSLADLDGR
Sbjct: 1  MVSPENPNWLFDYSLIDDIPVPDANFPVMSSSFSWAVQPFNGSPDAGVEIDGSLADLDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRS+SCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSESCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. TAIR10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPI-QPFNGAHDSGVEIDGSLADLDG 60
          MVSPEN NW+ D      I    G+F +    FSWP+ QP   + +S   +DGS  + + 
Sbjct: 1  MVSPENANWICDL-----IDADYGSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEA 60

Query: 61 RLESGSKKRVRSDSCSASSSKACREKLRR 89
            E GSKKR R +S SA+  KACREK RR
Sbjct: 61 SKEPGSKKRGRCESSSATXXKACREKQRR 84

[Close]

BLAST of CsaV3_3G022930 vs. TAIR10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 45/145 (31.03%), Postives = 57/145 (39.31%), Query Frame = 0


Query: 1   MVSPENPNWLFDYGLIE------DIPVP---DGNFPVASSSFSW---------------- 60
           MVSPEN NWL DY LIE      +   P   DG+  V   S+ W                
Sbjct: 1   MVSPENTNWLSDYPLIEGAFSDQNPTFPWQIDGSATVRIGSYIWRSCYGCVITQLVFRCS 60

Query: 61  -------------------------PIQPFNGAHD-------SGVEIDGSLADLDGRLES 89
                                    P+ P               VE+DG L D D   E 
Sbjct: 61  CCDRDIGLLHKSILCFFFCLRFAYVPLFPKEVDESRSLPIAKGSVEVDGFLCDADVIKEP 120

[Close]

BLAST of CsaV3_3G022930 vs. Swiss-Prot
Match: sp|Q9C682|BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.4e-13
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPEN NWL DY LIE      G F   + +F W I   +G+    VE+DG L D D  
Sbjct: 1  MVSPENTNWLSDYPLIE------GAFSDQNPTFPWQI---DGSATVSVEVDGFLCDADVI 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
           E  S+KR++++SC+ S+SKACREK RR
Sbjct: 61 KEPSSRKRIKTESCTGSNSKACREKQRR 79

[Close]

BLAST of CsaV3_3G022930 vs. Swiss-Prot
Match: sp|Q9FH37|ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-11
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPI-QPFNGAHDSGVEIDGSLADLDG 60
          MVSPEN NW+ D      I    G+F +    FSWP+ QP   + +S   +DGS  + + 
Sbjct: 1  MVSPENANWICDL-----IDADYGSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEA 60

Query: 61 RLESGSKKRVRSDSCSASSSKACREKLRR 89
            E GSKKR R +S SA+  KACREK RR
Sbjct: 61 SKEPGSKKRGRCESSSATXXKACREKQRR 84

[Close]

BLAST of CsaV3_3G022930 vs. TrEMBL
Match: tr|A0A0A0L7P5|A0A0A0L7P5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSWPIQPFNG+HDSGVEIDGSLADLDGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. TrEMBL
Match: tr|A0A0A0L7N8|A0A0A0L7N8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.7e-41
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSWPIQPFNG+HDSGVEIDGSLADLDG 
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWPIQPFNGSHDSGVEIDGSLADLDGH 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. TrEMBL
Match: tr|A0A1S3C042|A0A1S3C042_CUCME (transcription factor ILR3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494950 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSF+W IQPFNGAHD+GVEIDGSLAD+DGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFTWAIQPFNGAHDTGVEIDGSLADVDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. TrEMBL
Match: tr|A0A1S3BYW4|A0A1S3BYW4_CUCME (transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103494952 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-40
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
          MVSPENPNWLFDYGLIEDIPVPDGNFPV SSSFSW IQ FNGAHD+GVEIDGSLADLDGR
Sbjct: 1  MVSPENPNWLFDYGLIEDIPVPDGNFPVTSSSFSWAIQTFNGAHDTGVEIDGSLADLDGR 60

Query: 61 LESGSKKRVRSDSCSASSSKACREKLRR 89
          LESGSKKRVRSDSCSASSSKACREKLRR
Sbjct: 61 LESGSKKRVRSDSCSASSSKACREKLRR 88

[Close]

BLAST of CsaV3_3G022930 vs. TrEMBL
Match: tr|A0A2P5C4F5|A0A2P5C4F5_9ROSA (Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorBHLH43 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-29
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1   MVSPENPNWLFDYGLIEDIPVPDGNFPVASSSFSWPIQPFNGAHDSGVEIDGSLADLDGR 60
           MVSPEN NWLFDYGLI+DIPVPDGNFPV+SS FSWP+Q  NG+    VEIDGSL D +G 
Sbjct: 152 MVSPENTNWLFDYGLIDDIPVPDGNFPVSSSGFSWPVQTLNGSSSVSVEIDGSLGDTEGL 211

Query: 61  LESGSKKRVRSDSCSASSSKACREKLRR 89
            ESGSKKRVRS+S +ASS+KACREK RR
Sbjct: 212 KESGSKKRVRSESRNASSTKACREKQRR 239

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151959.2	1.9e-41	97.73	PREDICTED: transcription factor ILR3 [Cucumis sativus] >KGN57970.1 hypothetical ...	[more]
XP_004151962.2	7.2e-41	96.59	PREDICTED: transcription factor ILR3-like [Cucumis sativus] >KGN57965.1 hypothet...	[more]
XP_008454558.1	7.9e-40	94.32	PREDICTED: transcription factor ILR3 isoform X1 [Cucumis melo]	[more]
XP_008454561.1	1.4e-39	95.45	PREDICTED: transcription factor ILR3-like [Cucumis melo]	[more]
XP_023535130.1	1.4e-36	88.64	transcription factor ILR3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_3G022930 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54680.1	2.2e-12	44.94	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	1.1e-06	31.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CsaV3_3G022930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C682\|BH115_ARATH	7.4e-13	48.86	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
sp\|Q9FH37\|ILR3_ARATH	4.0e-11	44.94	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]

BLAST of CsaV3_3G022930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7P5\|A0A0A0L7P5_CUCSA	1.2e-41	97.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G416140 PE=4 SV=1	[more]
tr\|A0A0A0L7N8\|A0A0A0L7N8_CUCSA	4.7e-41	96.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415100 PE=4 SV=1	[more]
tr\|A0A1S3C042\|A0A1S3C042_CUCME	5.2e-40	94.32	transcription factor ILR3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494950 PE=...	[more]
tr\|A0A1S3BYW4\|A0A1S3BYW4_CUCME	9.0e-40	95.45	transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103494952 PE=4 SV=1	[more]
tr\|A0A2P5C4F5\|A0A2P5C4F5_9ROSA	7.1e-29	75.00	Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorB...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022930.1	CsaV3_3G022930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23042:SF78	SUBFAMILY NOT NAMED	coord: 24..88
None	No IPR available	PANTHER	PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	coord: 24..88

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G022930	Silver-seed gourd	carcucB0941
CsaV3_3G022930	Silver-seed gourd	carcucB1059
CsaV3_3G022930	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G022930	Cucumber (Gy14) v1	cgycucB410
CsaV3_3G022930	Cucurbita maxima (Rimu)	cmacucB0022
CsaV3_3G022930	Cucurbita maxima (Rimu)	cmacucB0549
CsaV3_3G022930	Cucurbita moschata (Rifu)	cmocucB0010
CsaV3_3G022930	Cucurbita moschata (Rifu)	cmocucB0534
CsaV3_3G022930	Cucurbita pepo (Zucchini)	cpecucB0688
CsaV3_3G022930	Cucurbita pepo (Zucchini)	cpecucB0965
CsaV3_3G022930	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G022930	Bottle gourd (USVL1VR-Ls)	cuclsiB213
CsaV3_3G022930	Melon (DHL92) v3.5.1	cucmeB207
CsaV3_3G022930	Melon (DHL92) v3.6.1	cucmedB200
CsaV3_3G022930	Watermelon (Charleston Gray)	cucwcgB242
CsaV3_3G022930	Watermelon (97103) v1	cucwmB257
CsaV3_3G022930	Watermelon (97103) v2	cucwmbB221
CsaV3_3G022930	Wax gourd	cucwgoB353