CsaV3_3G022890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022890
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 20426916 .. 20427713 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAACAATATTTATTCCTAACAGCAACAATCAAAGATTTTCAAGCAGATGAACATAAATAAAATTTAAATAAATAGTTTGATACCCAACATCAAACAATTCATTACTTAGGTTCCAACTCACCAACGAAAGAGGTTGAACCCAAATCAACCTTGGTTGGGGAAAGATTTCACAGCTCAAACCCTCCAAATAAAAATCCCAACCCAACCTCAAGCAAAAATAATACAACTCAAATCAATAATTTAAATTATTTCAAGCCAAAAATTTGTTACTTGATGGGTATACCTAAACTCAATCAAGAACTTACCAAAATAATAACCAAAAATAGGAAATTGGCTCAATTTGGCTCACTGCAAGGAAACAGCTCGAAGGTATGCATGCGGCTTGAAGTAGAGAGGAATCAGCTTGCTTGCACGAATGGAGGATGCGGCTCGCGAAGCTGAACATCTCGGGTTCACCTAAGACAAACATATGGAAATGGTCGACGAATGCGTGCGACGGTGAAAATGCGCAAAGATCGAACGGTTGGCAAAACGAAGACACGATGGCGAACGAAGCTTGTAGACAAAGAGATATGACCGAAATGTGCTCCACGACGCACGACAACCAAATGACTTGGGCAGAATGGGTTGGACGAACGACAGTAAAGACGAAGCCTTTCGAGAGAAGATGGTTGGTGAGTACTATGATGGGCGGCGGGTAGGGTATTTGGTGTGGGGAAGATTATTGGAGAAGGTGAAGTGCAAGAAGTCCTATTTAATATTATTATTATTATTATTATTTCTTTTCACCTTCTC

mRNA sequence

ATGCGGCTCGCGAAGCTGAACATCTCGGGTTCACCTAAGACAAACATATGGAAATGGTCGACGAATGCGTGCGACGGTGAAAATGCGCAAAGATCGAACGGTTGGCAAAACGAAGACACGATGGCGAACGAAGCTTGTAGACAAAGAGATATGACCGAAATGTGCTCCACGACGCACGACAACCAAATGACTTGGGCAGAATGGGTTGGACGAACGACAGTAAAGACGAAGCCTTTCGAGAGAAGATGGTTGGTGAGTACTATGATGGGCGGCGGGTAG

Coding sequence (CDS)

ATGCGGCTCGCGAAGCTGAACATCTCGGGTTCACCTAAGACAAACATATGGAAATGGTCGACGAATGCGTGCGACGGTGAAAATGCGCAAAGATCGAACGGTTGGCAAAACGAAGACACGATGGCGAACGAAGCTTGTAGACAAAGAGATATGACCGAAATGTGCTCCACGACGCACGACAACCAAATGACTTGGGCAGAATGGGTTGGACGAACGACAGTAAAGACGAAGCCTTTCGAGAGAAGATGGTTGGTGAGTACTATGATGGGCGGCGGGTAG

Protein sequence

MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHDNQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG
Homology
[Close]
BLAST of CsaV3_3G022890 vs. NCBI nr
Match: KGN57967.1 (hypothetical protein Csa_3G415120 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 4.9e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD 60
          MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD
Sbjct: 1  MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD 60

Query: 61 NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG 93
          NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG
Sbjct: 61 NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG 92

[Close]
BLAST of CsaV3_3G022890 vs. TrEMBL
Match: tr|A0A0A0LBE1|A0A0A0LBE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415120 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD 60
          MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD
Sbjct: 1  MRLAKLNISGSPKTNIWKWSTNACDGENAQRSNGWQNEDTMANEACRQRDMTEMCSTTHD 60

Query: 61 NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG 93
          NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG
Sbjct: 61 NQMTWAEWVGRTTVKTKPFERRWLVSTMMGGG 92

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57967.14.9e-48100.00hypothetical protein Csa_3G415120 [Cucumis sativus][more]
BLAST of CsaV3_3G022890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022890 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBE1|A0A0A0LBE1_CUCSA3.3e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G415120 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022890.1CsaV3_3G022890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G022890CSPI03G23180Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022890Silver-seed gourdcarcucB0941
CsaV3_3G022890Silver-seed gourdcarcucB1059
CsaV3_3G022890Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022890Cucumber (Gy14) v1cgycucB410
CsaV3_3G022890Cucurbita maxima (Rimu)cmacucB0022
CsaV3_3G022890Cucurbita maxima (Rimu)cmacucB0549
CsaV3_3G022890Cucurbita moschata (Rifu)cmocucB0010
CsaV3_3G022890Cucurbita moschata (Rifu)cmocucB0534
CsaV3_3G022890Cucurbita pepo (Zucchini)cpecucB0688
CsaV3_3G022890Cucurbita pepo (Zucchini)cpecucB0965
CsaV3_3G022890Bottle gourd (USVL1VR-Ls)cuclsiB213
CsaV3_3G022890Melon (DHL92) v3.5.1cucmeB207
CsaV3_3G022890Melon (DHL92) v3.6.1cucmedB200
CsaV3_3G022890Watermelon (Charleston Gray)cucwcgB242
CsaV3_3G022890Watermelon (97103) v1cucwmB257
CsaV3_3G022890Watermelon (97103) v2cucwmbB221
CsaV3_3G022890Wax gourdcucwgoB353