CsaV3_3G022830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 20342233 .. 20342611 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTACAGGGATCCTGCACGATTCACATCATCGCACAATCATTTCTCATCACTGGGACCTAGGATTCTCCCATCACTTGAACCTGGGACACATCTCAACCAACATCTTGCAAGTTTCCTGGGATATCCACCAGTGGCTCACAAATTATTTCTCACCACATGGGTCTGGGAGTCTCCTCTCACCTAGATTTGAAAGTCACTCTCAACCAGCGTCTTACGAGTTTTTTGGGTTATTCATCATCATTTCACAAATATTTTATTTCCTCAAGGTCATGGGACTCTCCCTTCACCTAGACTTGGAATTCATTCTCAACCAGCACCTTATGAGTTTCCTGGGATACCTATCATTATTTCACAAATCGTTCATCGCCTCGTAG

mRNA sequence

ATGCATTACAGGGATCCTGCACGATTCACATCATCGCACAATCATTTCTCATCACTGGGACCTAGGATTCTCCCATCACTTGAACCTGGGACACATCTCAACCAACATCTTGCAAGTTTCCTGGGATATCCACCAGTGGCTCACAAATTATTTCTCACCACATGGGTCATGGGACTCTCCCTTCACCTAGACTTGGAATTCATTCTCAACCAGCACCTTATGAGTTTCCTGGGATACCTATCATTATTTCACAAATCGTTCATCGCCTCGTAG

Coding sequence (CDS)

ATGCATTACAGGGATCCTGCACGATTCACATCATCGCACAATCATTTCTCATCACTGGGACCTAGGATTCTCCCATCACTTGAACCTGGGACACATCTCAACCAACATCTTGCAAGTTTCCTGGGATATCCACCAGTGGCTCACAAATTATTTCTCACCACATGGGTCATGGGACTCTCCCTTCACCTAGACTTGGAATTCATTCTCAACCAGCACCTTATGAGTTTCCTGGGATACCTATCATTATTTCACAAATCGTTCATCGCCTCGTAG

Protein sequence

MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLSLHLDLEFILNQHLMSFLGYLSLFHKSFIAS
Homology
[Close]
BLAST of CsaV3_3G022830 vs. NCBI nr
Match: KGN57959.1 (hypothetical protein Csa_3G414050 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS 60
          MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS
Sbjct: 1  MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS 60

Query: 61 LHLDLEF 68
          LHLDLEF
Sbjct: 61 LHLDLEF 67

[Close]
BLAST of CsaV3_3G022830 vs. TrEMBL
Match: tr|A0A0A0LAI4|A0A0A0LAI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414050 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-32
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS 60
          MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS
Sbjct: 1  MHYRDPARFTSSHNHFSSLGPRILPSLEPGTHLNQHLASFLGYPPVAHKLFLTTWVMGLS 60

Query: 61 LHLDLEF 68
          LHLDLEF
Sbjct: 61 LHLDLEF 67

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57959.18.3e-32100.00hypothetical protein Csa_3G414050 [Cucumis sativus][more]
BLAST of CsaV3_3G022830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAI4|A0A0A0LAI4_CUCSA5.5e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022830.1CsaV3_3G022830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022830Wax gourdcucwgoB353
CsaV3_3G022830Silver-seed gourdcarcucB0941
CsaV3_3G022830Silver-seed gourdcarcucB1059
CsaV3_3G022830Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022830Cucumber (Gy14) v1cgycucB410
CsaV3_3G022830Cucurbita maxima (Rimu)cmacucB0022
CsaV3_3G022830Cucurbita maxima (Rimu)cmacucB0549
CsaV3_3G022830Cucurbita moschata (Rifu)cmocucB0010
CsaV3_3G022830Cucurbita moschata (Rifu)cmocucB0534
CsaV3_3G022830Cucurbita pepo (Zucchini)cpecucB0688
CsaV3_3G022830Cucurbita pepo (Zucchini)cpecucB0965
CsaV3_3G022830Wild cucumber (PI 183967)cpicucB144
CsaV3_3G022830Bottle gourd (USVL1VR-Ls)cuclsiB213
CsaV3_3G022830Melon (DHL92) v3.5.1cucmeB207
CsaV3_3G022830Melon (DHL92) v3.6.1cucmedB200
CsaV3_3G022830Watermelon (Charleston Gray)cucwcgB242
CsaV3_3G022830Watermelon (97103) v1cucwmB257
CsaV3_3G022830Watermelon (97103) v2cucwmbB221