CsaV3_3G022440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022440
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 19751890 .. 19752162 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACCAAATTCGACAAAAACGGACCACTGAAAGGCCTCCAATGTGAGGTTTTACACAACTACACGTAAATTGAGACAGAAAAAAATTTGTGAGCACGTCTACAGGTTGAAGTAGGGCTGATGTCATTACGACGTCAATATGATGTCATCGTAACGTCAACAACTAAGGAGAGGCACAACTTGGCGTCTCGGCTTCGATTGATTTACATGCGGTTGACTTCGATTGGCACATGGTCGATTCCAGTTCATGGCTCTAGTTGGCTCGGTTGA

mRNA sequence

ATGATTACCAAATTCGACAAAAACGGACCACTGAAAGGCCTCCAATGTGAGGTTGAAGTAGGGCTGATGTCATTACGACGTCAATATGATGTCATCGTAACGTCAACAACTAAGGAGAGGCACAACTTGGCGTCTCGGCTTCGATTGATTTACATGCGGTTGACTTCGATTGGCACATGGTCGATTCCAGTTCATGGCTCTAGTTGGCTCGGTTGA

Coding sequence (CDS)

ATGATTACCAAATTCGACAAAAACGGACCACTGAAAGGCCTCCAATGTGAGGTTGAAGTAGGGCTGATGTCATTACGACGTCAATATGATGTCATCGTAACGTCAACAACTAAGGAGAGGCACAACTTGGCGTCTCGGCTTCGATTGATTTACATGCGGTTGACTTCGATTGGCACATGGTCGATTCCAGTTCATGGCTCTAGTTGGCTCGGTTGA

Protein sequence

MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTWSIPVHGSSWLG
Homology
[Close]
BLAST of CsaV3_3G022440 vs. NCBI nr
Match: KGN57922.1 (hypothetical protein Csa_3G391400 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW 60
          MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW
Sbjct: 1  MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW 60

Query: 61 SIPVHGSSWLG 72
          SIPVHGSSWLG
Sbjct: 61 SIPVHGSSWLG 71

[Close]
BLAST of CsaV3_3G022440 vs. TrEMBL
Match: tr|A0A0A0LB86|A0A0A0LB86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391400 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW 60
          MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW
Sbjct: 1  MITKFDKNGPLKGLQCEVEVGLMSLRRQYDVIVTSTTKERHNLASRLRLIYMRLTSIGTW 60

Query: 61 SIPVHGSSWLG 72
          SIPVHGSSWLG
Sbjct: 61 SIPVHGSSWLG 71

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57922.15.9e-33100.00hypothetical protein Csa_3G391400 [Cucumis sativus][more]
BLAST of CsaV3_3G022440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LB86|A0A0A0LB86_CUCSA3.9e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391400 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022440.1CsaV3_3G022440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022440Cucurbita pepo (Zucchini)cpecucB0902
CsaV3_3G022440Wild cucumber (PI 183967)cpicucB144
CsaV3_3G022440Wild cucumber (PI 183967)cpicucB152
CsaV3_3G022440Bottle gourd (USVL1VR-Ls)cuclsiB168
CsaV3_3G022440Bottle gourd (USVL1VR-Ls)cuclsiB236
CsaV3_3G022440Bottle gourd (USVL1VR-Ls)cuclsiB243
CsaV3_3G022440Melon (DHL92) v3.5.1cucmeB209
CsaV3_3G022440Melon (DHL92) v3.5.1cucmeB245
CsaV3_3G022440Melon (DHL92) v3.6.1cucmedB203
CsaV3_3G022440Melon (DHL92) v3.6.1cucmedB245
CsaV3_3G022440Watermelon (Charleston Gray)cucwcgB265
CsaV3_3G022440Watermelon (97103) v1cucwmB228
CsaV3_3G022440Watermelon (97103) v1cucwmB251
CsaV3_3G022440Watermelon (97103) v1cucwmB292
CsaV3_3G022440Watermelon (97103) v2cucwmbB215
CsaV3_3G022440Watermelon (97103) v2cucwmbB236
CsaV3_3G022440Watermelon (97103) v2cucwmbB245
CsaV3_3G022440Wax gourdcucwgoB309
CsaV3_3G022440Cucumber (Chinese Long) v3cuccucB073
CsaV3_3G022440Cucumber (Chinese Long) v3cuccucB110
CsaV3_3G022440Silver-seed gourdcarcucB0789
CsaV3_3G022440Silver-seed gourdcarcucB0816
CsaV3_3G022440Cucumber (Gy14) v2cgybcucB122
CsaV3_3G022440Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022440Cucumber (Gy14) v1cgycucB039
CsaV3_3G022440Cucumber (Gy14) v1cgycucB389
CsaV3_3G022440Cucurbita maxima (Rimu)cmacucB0621
CsaV3_3G022440Cucurbita maxima (Rimu)cmacucB0710
CsaV3_3G022440Cucurbita maxima (Rimu)cmacucB1054
CsaV3_3G022440Cucurbita moschata (Rifu)cmocucB0604
CsaV3_3G022440Cucurbita moschata (Rifu)cmocucB0696
CsaV3_3G022440Cucurbita pepo (Zucchini)cpecucB0304