CsaV3_3G022400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 19731787 .. 19732212 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAATACCTACAATCAAAAATTCCAAAAATGTCCGTGTGATATATTACTCTCCATTTTTGACATCTAGCACGTGTGATATATTTGGCTATTTTTGTATCGTTTAAATTTGGGTTGTCAAATCTCAACGATTTTTTCAAGATTTTTTGGAAAACGTTCGTTTATATTTTGTACGCGTTCAATTAGATTTGATCGTTAAATTTGGGCAGTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

mRNA sequence

ATGGAAAAATACCTACAATCAAAAATTCCAAAAATTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

Coding sequence (CDS)

ATGGAAAAATACCTACAATCAAAAATTCCAAAAATTCAAATTATTGGCCTGTACTACAGACCAGGCACTGAGACTAGACATCTTGTTCGATACTGGGGGAAACTTTCTAGGTCTCACAGCTACGGTCGTCTAACTGAAAGAGCTAGAAGAAAGTGGGCCCCAGGAGCGAGACCAGAAAATTCCCCGTTATTTGATTACGATAGTTGGAGCACTCTTCGAACGCTCGACAAAATAGAAAAGAGGTTTTGA

Protein sequence

MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPENSPLFDYDSWSTLRTLDKIEKRF
Homology
[Close]
BLAST of CsaV3_3G022400 vs. NCBI nr
Match: KGN57919.1 (hypothetical protein Csa_3G390880 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 5.2e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60
          MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN
Sbjct: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60

Query: 61 SPLFDYDSWSTLRTLDKIEKRF 83
          SPLFDYDSWSTLRTLDKIEKRF
Sbjct: 61 SPLFDYDSWSTLRTLDKIEKRF 82

[Close]
BLAST of CsaV3_3G022400 vs. TrEMBL
Match: tr|A0A0A0LAC7|A0A0A0LAC7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G390880 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60
          MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN
Sbjct: 1  MEKYLQSKIPKIQIIGLYYRPGTETRHLVRYWGKLSRSHSYGRLTERARRKWAPGARPEN 60

Query: 61 SPLFDYDSWSTLRTLDKIEKRF 83
          SPLFDYDSWSTLRTLDKIEKRF
Sbjct: 61 SPLFDYDSWSTLRTLDKIEKRF 82

The following BLAST results are available for this feature:
BLAST of CsaV3_3G022400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57919.15.2e-41100.00hypothetical protein Csa_3G390880 [Cucumis sativus][more]
BLAST of CsaV3_3G022400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G022400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAC7|A0A0A0LAC7_CUCSA3.5e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G390880 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022400.1CsaV3_3G022400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G022400Cucurbita moschata (Rifu)cmocucB0696
CsaV3_3G022400Cucurbita pepo (Zucchini)cpecucB0304
CsaV3_3G022400Cucurbita pepo (Zucchini)cpecucB0902
CsaV3_3G022400Wild cucumber (PI 183967)cpicucB144
CsaV3_3G022400Wild cucumber (PI 183967)cpicucB152
CsaV3_3G022400Bottle gourd (USVL1VR-Ls)cuclsiB168
CsaV3_3G022400Bottle gourd (USVL1VR-Ls)cuclsiB236
CsaV3_3G022400Bottle gourd (USVL1VR-Ls)cuclsiB243
CsaV3_3G022400Melon (DHL92) v3.5.1cucmeB209
CsaV3_3G022400Melon (DHL92) v3.5.1cucmeB245
CsaV3_3G022400Melon (DHL92) v3.6.1cucmedB203
CsaV3_3G022400Melon (DHL92) v3.6.1cucmedB245
CsaV3_3G022400Watermelon (Charleston Gray)cucwcgB265
CsaV3_3G022400Watermelon (97103) v1cucwmB228
CsaV3_3G022400Watermelon (97103) v1cucwmB251
CsaV3_3G022400Watermelon (97103) v1cucwmB292
CsaV3_3G022400Watermelon (97103) v2cucwmbB215
CsaV3_3G022400Watermelon (97103) v2cucwmbB236
CsaV3_3G022400Watermelon (97103) v2cucwmbB245
CsaV3_3G022400Wax gourdcucwgoB309
CsaV3_3G022400Cucumber (Chinese Long) v3cuccucB073
CsaV3_3G022400Cucumber (Chinese Long) v3cuccucB110
CsaV3_3G022400Silver-seed gourdcarcucB0789
CsaV3_3G022400Silver-seed gourdcarcucB0816
CsaV3_3G022400Cucumber (Gy14) v2cgybcucB122
CsaV3_3G022400Cucumber (Gy14) v2cgybcucB117
CsaV3_3G022400Cucumber (Gy14) v1cgycucB039
CsaV3_3G022400Cucumber (Gy14) v1cgycucB389
CsaV3_3G022400Cucurbita maxima (Rimu)cmacucB0621
CsaV3_3G022400Cucurbita maxima (Rimu)cmacucB0710
CsaV3_3G022400Cucurbita maxima (Rimu)cmacucB1054
CsaV3_3G022400Cucurbita moschata (Rifu)cmocucB0604