CsaV3_3G022340 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G022340
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	phosphate transporter 1;1
Location	chr3 : 19644068 .. 19644878 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAGCTCTTCTTGCTCCTCTTACTTGCTATTGGAGGATGAAAATGCCTGAAACGACAAGTTACACGACTCCTTTCGCGAGATACAACTCAAGCAGCTTCAGATATGCCAAAAGTTCTGCAAATGGATATTGGAAAGCAGAAGCGCAAAAGCTTGCTGCTGAAATGTCAAATGAAAATGCAGGTCCAAGTGCAAACGACTTGTTCTCTAGAGTTTTTGTATCAGCATGGAACTCATTTACTTGTAGTTAGAACTTGGTTTTTACTTCATATTGTATTTTACAGTCACAAGTTTTTAAAAGATATCCTTAGTTCAATTGGATGAATTCCACCAGCAGCCACTATTGAATGAAATTCAAGTTTTTAGAATAGTAAGAGATCAACACTCATTGCTCTCTGTCGAACTGTCCCTGGCTATTGGTTTGCAGTGGCTTTCATTGACAAAATGAGAAGATTTGCCATTCAAATTCTTCTTCATGACACAGCCTTCATCTTTGGTTTAACCATTCCATACCATCATTGAACTCAAGGACAATCAGATTGACTTCTGTTCTCTACTCATAGCGTTCATTTTCATTTTCAATTTCGGATCGAATGCAAGAACTTGTCGCCCCAGCAGAAATCTTTGTTGAACCGATTTTGTTGTAATTGCCACCCAATATCATCAACATTTGGGACGCTTAGAGCTATGGTGGGTGCATTTGGTTTTCTTTATTTGGCTCAAATCCAGGACAAGAACAAAACTGATGCAAGATATCCTCCTGGCATTGGCGTCAATAACTCACTTCTATTGATGGGGTGGACTTAA

mRNA sequence

ATGGTTGGAGCTCTTCTTGCTCCTCTTACTTGCTATTGGAGGATGAAAATGCCTGAAACGACAAGTTACACGACTCCTTTCGCGAGATACAACTCAAGCAGCTTCAGATATGCCAAAAGTTCTGCAAATGGATATTGGAAAGCAGAAGCGCAAAAGCTTGCTGCTGAAATGTCAAATGAAAATGCAGGTCCAAGTGCAAACGACTTGTTCTCTAGAGACAAGAACAAAACTGATGCAAGATATCCTCCTGGCATTGGCGTCAATAACTCACTTCTATTGATGGGGTGGACTTAA

Coding sequence (CDS)

ATGGTTGGAGCTCTTCTTGCTCCTCTTACTTGCTATTGGAGGATGAAAATGCCTGAAACGACAAGTTACACGACTCCTTTCGCGAGATACAACTCAAGCAGCTTCAGATATGCCAAAAGTTCTGCAAATGGATATTGGAAAGCAGAAGCGCAAAAGCTTGCTGCTGAAATGTCAAATGAAAATGCAGGTCCAAGTGCAAACGACTTGTTCTCTAGAGACAAGAACAAAACTGATGCAAGATATCCTCCTGGCATTGGCGTCAATAACTCACTTCTATTGATGGGGTGGACTTAA

Protein sequence

MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNENAGPSANDLFSRDKNKTDARYPPGIGVNNSLLLMGWT

Homology

[Close]

BLAST of CsaV3_3G022340 vs. NCBI nr
Match: KGN57914.1 (hypothetical protein Csa_3G389840 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 9.9e-39
Identity = 93/149 (62.42%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE
Sbjct: 151 MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 210

Query: 61  NAGPSANDLFS------------------------------------------------- 98
           NAGPSAND                                                    
Sbjct: 211 NAGPSANDFVHFHFQFRIECKNLSPQQKSLLNRFCCNCHPISSTFGTLRAMVGAFGFLYL 270

[Close]

BLAST of CsaV3_3G022340 vs. NCBI nr
Match: XP_008447657.1 (PREDICTED: inorganic phosphate transporter 1-4 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           MVGAL A LT YWRMKMPET  YT   A+  + +            +AEAQK AA+   E
Sbjct: 220 MVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMEIEAEAQKPAAQTPKE 279

Query: 61  NAGPSANDLFSRD 74
           NA PSA  LFS++
Sbjct: 280 NASPSAYGLFSKE 292

[Close]

BLAST of CsaV3_3G022340 vs. TAIR10
Match: AT5G43360.1 (phosphate transporter 1;3)

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 72  RDKNKTDARYPPGIGVNNSLLLMG 96
           +DK KTDA YPPGIGV NSL+++G
Sbjct: 466 QDKTKTDAGYPPGIGVKNSLIMLG 489

HSP 2 Score: 39.3 bits (90), Expect = 1.6e-03
Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFAR 30
           M GAL A LT YWRMKMPET  YT   A+
Sbjct: 220 MFGALPAALTYYWRMKMPETARYTALVAK 248

[Close]

BLAST of CsaV3_3G022340 vs. TAIR10
Match: AT2G38940.1 (phosphate transporter 1;4)

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 73  DKNKTDARYPPGIGVNNSLLLMG 96
           DK+KTDA YPPGIGV NSL+++G
Sbjct: 468 DKDKTDAGYPPGIGVRNSLIVLG 490

[Close]

BLAST of CsaV3_3G022340 vs. TAIR10
Match: AT5G43350.1 (phosphate transporter 1;1)

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0


Query: 71  SRDKNKTDARYPPGIGVNNSLLLMG 96
           S+DK K DA YPPGIGV NSL+++G
Sbjct: 465 SQDKAKVDAGYPPGIGVKNSLIMLG 489

HSP 2 Score: 39.3 bits (90), Expect = 1.6e-03
Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFAR 30
           M GAL A LT YWRMKMPET  YT   A+
Sbjct: 220 MFGALPAALTYYWRMKMPETARYTALVAK 248

[Close]

BLAST of CsaV3_3G022340 vs. TAIR10
Match: AT2G32830.1 (phosphate transporter 1;5)

HSP 1 Score: 40.4 bits (93), Expect = 7.3e-04
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = 0


Query: 71  SRDKNKTDARYPPGIGVNNSLLLM 95
           S D  KTDA YPPGIGV NSLL++
Sbjct: 467 SSDSEKTDAGYPPGIGVRNSLLML 490

HSP 2 Score: 37.4 bits (85), Expect = 6.2e-03
Identity = 28/71 (39.44%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           M GA+ A LT YWRMKMPET       ARY +   R  K +A+   K     L AE   +
Sbjct: 220 MFGAIPALLTYYWRMKMPET-------ARYTALVARNTKQAASDMSKVLQVDLIAEEEAQ 279

Query: 61  NAGPSANDLFS 72
           +   S+N  F+
Sbjct: 280 SNSNSSNPNFT 283

[Close]

BLAST of CsaV3_3G022340 vs. TAIR10
Match: AT4G08878.1 (Major facilitator superfamily protein)

HSP 1 Score: 40.4 bits (93), Expect = 7.3e-04
Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFAR 30
           MVGAL A LT YWRMKMPET  YT   A+
Sbjct: 202 MVGALPALLTYYWRMKMPETARYTALVAK 230

[Close]

BLAST of CsaV3_3G022340 vs. TrEMBL
Match: tr|A0A0A0LAC0|A0A0A0LAC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G389840 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.5e-39
Identity = 93/149 (62.42%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE
Sbjct: 151 MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 210

Query: 61  NAGPSANDLFS------------------------------------------------- 98
           NAGPSAND                                                    
Sbjct: 211 NAGPSANDFVHFHFQFRIECKNLSPQQKSLLNRFCCNCHPISSTFGTLRAMVGAFGFLYL 270

[Close]

BLAST of CsaV3_3G022340 vs. TrEMBL
Match: tr|A0A1S3BIK2|A0A1S3BIK2_CUCME (inorganic phosphate transporter 1-4 OS=Cucumis melo OX=3656 GN=LOC103490066 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 36/73 (49.32%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           MVGAL A LT YWRMKMPET  YT   A+  + +            +AEAQK AA+   E
Sbjct: 220 MVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMEIEAEAQKPAAQTPKE 279

Query: 61  NAGPSANDLFSRD 74
           NA PSA  LFS++
Sbjct: 280 NASPSAYGLFSKE 292

[Close]

BLAST of CsaV3_3G022340 vs. TrEMBL
Match: tr|A0A2N9GNK7|A0A2N9GNK7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28706 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.8e-04
Identity = 34/94 (36.17%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1   MVGALLAPLTCYWRMKMPETTSYTTPFARYNSSSFRYAKSSANGYWKAEAQKLAAEMSNE 60
           M+GAL A LT YWRM+MPET  YT   A+              G  +   ++ AA     
Sbjct: 209 MLGALPAALTFYWRMQMPETARYTALVAKNAKQGSSRHVFVIRGRAQTRKRQAAAGKIGA 268

Query: 61  NAGPSANDLFSRDKNKTDARYPPGIGVNNSLLLM 95
            AG       +  K + D  Y PGIG+ N+LLL+
Sbjct: 269 IAGTLGFMYATESKTQPDPGYSPGIGIQNTLLLL 302

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57914.1	9.9e-39	62.42	hypothetical protein Csa_3G389840 [Cucumis sativus]	[more]
XP_008447657.1	1.9e-05	49.32	PREDICTED: inorganic phosphate transporter 1-4 [Cucumis melo]	[more]

BLAST of CsaV3_3G022340 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43360.1	1.1e-04	70.83	phosphate transporter 1;3	[more]
AT2G38940.1	1.5e-04	73.91	phosphate transporter 1;4	[more]
AT5G43350.1	2.5e-04	68.00	phosphate transporter 1;1	[more]
AT2G32830.1	7.3e-04	70.83	phosphate transporter 1;5	[more]
AT4G08878.1	7.3e-04	68.97	Major facilitator superfamily protein	[more]

BLAST of CsaV3_3G022340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAC0\|A0A0A0LAC0_CUCSA	6.5e-39	62.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G389840 PE=4 SV=1	[more]
tr\|A0A1S3BIK2\|A0A1S3BIK2_CUCME	1.2e-05	49.32	inorganic phosphate transporter 1-4 OS=Cucumis melo OX=3656 GN=LOC103490066 PE=4...	[more]
tr\|A0A2N9GNK7\|A0A2N9GNK7_FAGSY	6.8e-04	36.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28706 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0044765	single-organism transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022340.1	CsaV3_3G022340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G022340	CSPI03G22590	Wild cucumber (PI 183967)	cpicucB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G022340	Cucumber (Gy14) v2	cgybcucB122
CsaV3_3G022340	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G022340	Cucumber (Gy14) v1	cgycucB039
CsaV3_3G022340	Cucumber (Gy14) v1	cgycucB389
CsaV3_3G022340	Cucurbita maxima (Rimu)	cmacucB0621
CsaV3_3G022340	Cucurbita maxima (Rimu)	cmacucB0710
CsaV3_3G022340	Cucurbita maxima (Rimu)	cmacucB1054
CsaV3_3G022340	Cucurbita moschata (Rifu)	cmocucB0604
CsaV3_3G022340	Cucurbita moschata (Rifu)	cmocucB0696
CsaV3_3G022340	Cucurbita pepo (Zucchini)	cpecucB0304
CsaV3_3G022340	Cucurbita pepo (Zucchini)	cpecucB0902
CsaV3_3G022340	Wild cucumber (PI 183967)	cpicucB152
CsaV3_3G022340	Bottle gourd (USVL1VR-Ls)	cuclsiB168
CsaV3_3G022340	Bottle gourd (USVL1VR-Ls)	cuclsiB236
CsaV3_3G022340	Bottle gourd (USVL1VR-Ls)	cuclsiB243
CsaV3_3G022340	Melon (DHL92) v3.5.1	cucmeB209
CsaV3_3G022340	Melon (DHL92) v3.5.1	cucmeB245
CsaV3_3G022340	Melon (DHL92) v3.6.1	cucmedB203
CsaV3_3G022340	Melon (DHL92) v3.6.1	cucmedB245
CsaV3_3G022340	Watermelon (Charleston Gray)	cucwcgB265
CsaV3_3G022340	Watermelon (97103) v1	cucwmB228
CsaV3_3G022340	Watermelon (97103) v1	cucwmB251
CsaV3_3G022340	Watermelon (97103) v1	cucwmB292
CsaV3_3G022340	Watermelon (97103) v2	cucwmbB215
CsaV3_3G022340	Watermelon (97103) v2	cucwmbB236
CsaV3_3G022340	Watermelon (97103) v2	cucwmbB245
CsaV3_3G022340	Wax gourd	cucwgoB286
CsaV3_3G022340	Wax gourd	cucwgoB309
CsaV3_3G022340	Cucumber (Chinese Long) v3	cuccucB073
CsaV3_3G022340	Cucumber (Chinese Long) v3	cuccucB110
CsaV3_3G022340	Silver-seed gourd	carcucB0789
CsaV3_3G022340	Silver-seed gourd	carcucB0816