CsaV3_3G022300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G022300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 19585595 .. 19585864 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTGTATCGCCTCGTCAAGCTTCGATGGATTTTCACCAATCCTCAGCTTCTTTTAGTAGCAAAAACGAAGCTAGCTTGACTTGTCTTTCCTCATGGCAGCCCATAACCCTGAGACACTTCTCTACCAAATTCAGCTACACCTCAGCATCTACAGAGTCCATTGGACCTTCATATATTGTTGCTCCTAAAGCTTTTAGCCGTTTTATTCCTTACTTCATCTCTAAATCCCTCGATGCAGACCCTAATGTTTCAATTATCTTTTGA

mRNA sequence

ATGACATCTGTATCGCCTCGTCAAGCTTCGATGGATTTTCACCAATCCTCAGCTTCTTTTAGTAGCAAAAACGAAGCTAGCTTGACTTGTCTTTCCTCATGGCAGCCCATAACCCTGAGACACTTCTCTACCAAATTCAGCTACACCTCAGCATCTACAGAGTCCATTGGACCTTCATATATTGTTGCTCCTAAAGCTTTTAGCCGTTTTATTCCTTACTTCATCTCTAAATCCCTCGATGCAGACCCTAATGTTTCAATTATCTTTTGA

Coding sequence (CDS)

ATGACATCTGTATCGCCTCGTCAAGCTTCGATGGATTTTCACCAATCCTCAGCTTCTTTTAGTAGCAAAAACGAAGCTAGCTTGACTTGTCTTTCCTCATGGCAGCCCATAACCCTGAGACACTTCTCTACCAAATTCAGCTACACCTCAGCATCTACAGAGTCCATTGGACCTTCATATATTGTTGCTCCTAAAGCTTTTAGCCGTTTTATTCCTTACTTCATCTCTAAATCCCTCGATGCAGACCCTAATGTTTCAATTATCTTTTGA

Protein sequence

MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSYIVAPKAFSRFIPYFISKSLDADPNVSIIF

Homology

[Close]

BLAST of CsaV3_3G022300 vs. NCBI nr
Match: KGN57911.1 (hypothetical protein Csa_3G387080 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.7e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY 60
          MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY
Sbjct: 1  MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY 60

Query: 61 IVAPKAFSRFIPYFISKSLDADPNVSIIF 90
          IVAPKAFSRFIPYFISKSLDADPNVSIIF
Sbjct: 61 IVAPKAFSRFIPYFISKSLDADPNVSIIF 89

[Close]

BLAST of CsaV3_3G022300 vs. TrEMBL
Match: tr|A0A0A0LCW5|A0A0A0LCW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G387080 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY 60
          MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY
Sbjct: 1  MTSVSPRQASMDFHQSSASFSSKNEASLTCLSSWQPITLRHFSTKFSYTSASTESIGPSY 60

Query: 61 IVAPKAFSRFIPYFISKSLDADPNVSIIF 90
          IVAPKAFSRFIPYFISKSLDADPNVSIIF
Sbjct: 61 IVAPKAFSRFIPYFISKSLDADPNVSIIF 89

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57911.1	3.7e-40	100.00	hypothetical protein Csa_3G387080 [Cucumis sativus]	[more]

BLAST of CsaV3_3G022300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCW5\|A0A0A0LCW5_CUCSA	2.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G387080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022300.1	CsaV3_3G022300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G022300	Cucumber (Chinese Long) v3	cuccucB073
CsaV3_3G022300	Cucumber (Chinese Long) v3	cuccucB110
CsaV3_3G022300	Silver-seed gourd	carcucB0789
CsaV3_3G022300	Silver-seed gourd	carcucB0816
CsaV3_3G022300	Cucumber (Gy14) v2	cgybcucB122
CsaV3_3G022300	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G022300	Cucumber (Gy14) v1	cgycucB039
CsaV3_3G022300	Cucumber (Gy14) v1	cgycucB389
CsaV3_3G022300	Cucurbita maxima (Rimu)	cmacucB0621
CsaV3_3G022300	Cucurbita maxima (Rimu)	cmacucB0710
CsaV3_3G022300	Cucurbita maxima (Rimu)	cmacucB1054
CsaV3_3G022300	Cucurbita moschata (Rifu)	cmocucB0604
CsaV3_3G022300	Cucurbita moschata (Rifu)	cmocucB0696
CsaV3_3G022300	Cucurbita pepo (Zucchini)	cpecucB0304
CsaV3_3G022300	Cucurbita pepo (Zucchini)	cpecucB0902
CsaV3_3G022300	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G022300	Wild cucumber (PI 183967)	cpicucB152
CsaV3_3G022300	Bottle gourd (USVL1VR-Ls)	cuclsiB168
CsaV3_3G022300	Bottle gourd (USVL1VR-Ls)	cuclsiB236
CsaV3_3G022300	Bottle gourd (USVL1VR-Ls)	cuclsiB243
CsaV3_3G022300	Melon (DHL92) v3.5.1	cucmeB209
CsaV3_3G022300	Melon (DHL92) v3.5.1	cucmeB245
CsaV3_3G022300	Melon (DHL92) v3.6.1	cucmedB203
CsaV3_3G022300	Melon (DHL92) v3.6.1	cucmedB245
CsaV3_3G022300	Watermelon (Charleston Gray)	cucwcgB265
CsaV3_3G022300	Watermelon (97103) v1	cucwmB228
CsaV3_3G022300	Watermelon (97103) v1	cucwmB251
CsaV3_3G022300	Watermelon (97103) v1	cucwmB292
CsaV3_3G022300	Watermelon (97103) v2	cucwmbB215
CsaV3_3G022300	Watermelon (97103) v2	cucwmbB236
CsaV3_3G022300	Watermelon (97103) v2	cucwmbB245
CsaV3_3G022300	Wax gourd	cucwgoB286
CsaV3_3G022300	Wax gourd	cucwgoB309